메뉴 건너뛰기




Volumn 25, Issue 24, 2009, Pages 3296-3302

Estimating population haplotype frequencies from pooled SNP data using incomplete database information

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; ARTICLE; BIOLOGY; GENE FREQUENCY; GENETIC DATABASE; GENOTYPE; HAPLOTYPE; METHODOLOGY; SINGLE NUCLEOTIDE POLYMORPHISM;

EID: 75849142896     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btp584     Document Type: Article
Times cited : (14)

References (24)
  • 2
    • 10044254265 scopus 로고    scopus 로고
    • The role of haplotypes in candidate gene studies
    • Clark, A.G. (2004) The role of haplotypes in candidate gene studies. Genet. Epidemiol., 27, 321-333.
    • (2004) Genet. Epidemiol. , vol.27 , pp. 321-333
    • Clark, A.G.1
  • 3
    • 27644439141 scopus 로고    scopus 로고
    • Efficiency and power in genetic association studies
    • de Bakker, P.I.W. et al. (2005) Efficiency and power in genetic association studies. Nat. Genet., 37, 1217-1223.
    • (2005) Nat. Genet. , vol.37 , pp. 1217-1223
    • de Bakker, P.I.W.1
  • 5
    • 78449288754 scopus 로고    scopus 로고
    • Estimating haplotype frequencies by combining data from large DNA pools with database information. IEEE/ACM Trans
    • Available at (last accessed date October 14, 2009)
    • Gasbarra, D. et al. (2009) Estimating haplotype frequencies by combining data from large DNA pools with database information. IEEE/ACM Trans. Comput. Biol. Bioinform., Available at http://doi.ieeecomputersociety.org/10.1109/TCBB.2009.71 (last accessed date October 14, 2009).
    • (2009) Comput. Biol. Bioinform.
    • Gasbarra, D.1
  • 6
    • 77956889087 scopus 로고
    • Reversible jump Markov chain Monte Carlo computation and Bayesian model determination
    • Green, P.J. (1995) Reversible jump Markov chain Monte Carlo computation and Bayesian model determination. Biometrika, 82, 711-732.
    • (1995) Biometrika , vol.82 , pp. 711-732
    • Green, P.J.1
  • 7
    • 77956890234 scopus 로고
    • Monte Carlo sampling methods using Markov chains and their applications
    • Hastings, W.K. (1970) Monte Carlo sampling methods using Markov chains and their applications. Biometrika, 57, 97-109.
    • (1970) Biometrika , vol.57 , pp. 97-109
    • Hastings, W.K.1
  • 8
    • 35348983887 scopus 로고    scopus 로고
    • A second generation human haplotype map of over 3.1 million SNPs
    • International HapMap Consortium
    • International HapMap Consortium (2007) A second generation human haplotype map of over 3.1 million SNPs. Nature, 449, 851-861.
    • (2007) Nature , vol.449 , pp. 851-861
  • 9
    • 0037320552 scopus 로고    scopus 로고
    • Estimation of haplotype frequencies, linkage-disequilibrium measures, and combination of haplotype copies in each pool by use of pooled DNA data
    • Ito, T. et al. (2003) Estimation of haplotype frequencies, linkage-disequilibrium measures, and combination of haplotype copies in each pool by use of pooled DNA data. Am. J. Hum. Genet., 72, 384-398.
    • (2003) Am. J. Hum. Genet. , vol.72 , pp. 384-398
    • Ito, T.1
  • 10
    • 58149301372 scopus 로고    scopus 로고
    • Impact and quantification of the sources of error in DNA pooling designs
    • Jawaid, A. and Sham, P. (2009) Impact and quantification of the sources of error in DNA pooling designs. Ann. Hum. Genet., 73, 118-124.
    • (2009) Ann. Hum. Genet. , vol.73 , pp. 118-124
    • Jawaid, A.1    Sham, P.2
  • 11
    • 36448956040 scopus 로고    scopus 로고
    • Haplopool: improving haplotype frequency estimation through DNA pools and phylogenetic modeling
    • Kirkpatrick, B. et al. (2007) Haplopool: improving haplotype frequency estimation through DNA pools and phylogenetic modeling. Bioinformatics, 23, 3048-3055.
    • (2007) Bioinformatics , vol.23 , pp. 3048-3055
    • Kirkpatrick, B.1
  • 12
    • 59549106210 scopus 로고    scopus 로고
    • Computationally feasible estimation of haplotype frequencies from grouped DNAwith and without Hardy-Weinberg equilibrium
    • Kuk, A.Y.C. et al. (2009) Computationally feasible estimation of haplotype frequencies from grouped DNAwith and without Hardy-Weinberg equilibrium. Bioinformatics, 25, 379-386.
    • (2009) Bioinformatics , vol.25 , pp. 379-386
    • Kuk, A.Y.C.1
  • 13
    • 0347361674 scopus 로고    scopus 로고
    • Modelling linkage disequilibrium, and identifying recombination hotspots using SNP data
    • Li, N. and Stephens, M. (2003) Modelling linkage disequilibrium, and identifying recombination hotspots using SNP data. Genetics, 165, 2213-2233.
    • (2003) Genetics , vol.165 , pp. 2213-2233
    • Li, N.1    Stephens, M.2
  • 14
    • 41849096053 scopus 로고    scopus 로고
    • Highly cost-efficient genome-wide association studies using DNA pools and dense SNP arrays
    • Macgregor, S. et al. (2008) Highly cost-efficient genome-wide association studies using DNA pools and dense SNP arrays. Nucleic Acid Res., 36, e35.
    • (2008) Nucleic Acid Res. , vol.36
    • Macgregor, S.1
  • 15
    • 33344458848 scopus 로고    scopus 로고
    • A comparison of phasing algorithms for trios and unrelated individuals
    • Marchini, J. et al. (2006) A comparison of phasing algorithms for trios and unrelated individuals. Am. J. Hum. Genet., 78, 437-450.
    • (2006) Am. J. Hum. Genet. , vol.78 , pp. 437-450
    • Marchini, J.1
  • 16
    • 5744249209 scopus 로고
    • Equations of state calculations by fast computing machine
    • 1097-1091
    • Metropolis, N. et al. (1953) Equations of state calculations by fast computing machine. J. Chem. Phys., 21, 1097-1091.
    • (1953) J. Chem. Phys. , vol.21
    • Metropolis, N.1
  • 17
    • 10044232695 scopus 로고    scopus 로고
    • Algorithms for inferring haplotypes
    • Niu, T. (2004) Algorithms for inferring haplotypes. Genet. Epidemiol., 27, 334-347.
    • (2004) Genet. Epidemiol. , vol.27 , pp. 334-347
    • Niu, T.1
  • 18
    • 63449137622 scopus 로고    scopus 로고
    • Estimating population haplotype frequencies from pooled DNA samples using PHASE algorithm
    • Pirinen, M. et al. (2008) Estimating population haplotype frequencies from pooled DNA samples using PHASE algorithm. Genet. Res., 90, 509-524.
    • (2008) Genet. Res. , vol.90 , pp. 509-524
    • Pirinen, M.1
  • 19
    • 70350220595 scopus 로고    scopus 로고
    • Genotyping technologies for genetic research
    • Ragoussis, J. (2009) Genotyping technologies for genetic research. Annu. Rev. Genomics Hum. Genet., 10, 117-133.
    • (2009) Annu. Rev. Genomics Hum. Genet. , vol.10 , pp. 117-133
    • Ragoussis, J.1
  • 20
    • 0036844881 scopus 로고    scopus 로고
    • DNA pooling: a tool for large-scale association studies
    • Sham, P. et al. (2002) DNA pooling: a tool for large-scale association studies. Nat. Rev. Genet., 3, 862-871.
    • (2002) Nat. Rev. Genet. , vol.3 , pp. 862-871
    • Sham, P.1
  • 21
    • 13844270527 scopus 로고    scopus 로고
    • Accounting for decay of linkage disequilibrium in haplotype inference and missing-data imputation
    • Stephens, M. and Scheet, P. (2005). Accounting for decay of linkage disequilibrium in haplotype inference and missing-data imputation. Am. J. Hum. Genet., 76, 449-462.
    • (2005) Am. J. Hum. Genet. , vol.76 , pp. 449-462
    • Stephens, M.1    Scheet, P.2
  • 22
    • 0037226556 scopus 로고    scopus 로고
    • On the use of DNA pooling to estimate haplotype frequencies
    • Wang, S. et al. (2003) On the use of DNA pooling to estimate haplotype frequencies. Genet. Epidemiol., 24, 74-82.
    • (2003) Genet. Epidemiol. , vol.24 , pp. 74-82
    • Wang, S.1
  • 23
    • 0038472056 scopus 로고    scopus 로고
    • Efficiency of single-nucleotide polymorphism haplotype estimation from pooled DNA
    • Yang, Y. et al. (2003) Efficiency of single-nucleotide polymorphism haplotype estimation from pooled DNA. Proc. Natl Acad. Sci. USA, 100, 7225-7230.
    • (2003) Proc. Natl Acad. Sci. USA , vol.100 , pp. 7225-7230
    • Yang, Y.1
  • 24
    • 50549099783 scopus 로고    scopus 로고
    • Poool: an efficient method for estimating haplotype frequencies from large DNA pools
    • Zhang, H. et al. (2008) Poool: an efficient method for estimating haplotype frequencies from large DNA pools. Bioinformatics, 24, 1942-1948.
    • (2008) Bioinformatics , vol.24 , pp. 1942-1948
    • Zhang, H.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.