Transient competitive complexation in biological kinetic isotope fractionation explains nonsteady isotopic effects: Theory and application to denitrification in soils

Journal of Geophysical Research: Biogeosciences

Volumn 114, Issue 4, 2009, Pages

  Maggi, Federico ^a,b   Riley, William J ^b  

^a UNIVERSITY OF SYDNEY   (Australia)

^b LAWRENCE BERKELEY NATIONAL LABORATORY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BIOGEOCHEMISTRY; BIOMASS; COMPLEXATION; DENITRIFICATION; ENZYME; ISOTOPIC FRACTIONATION; NITROGEN DIOXIDE; NITROGEN ISOTOPE; NITROUS OXIDE; NUMERICAL MODEL; REACTION KINETICS; SOIL NITROGEN; THEORETICAL STUDY;

EID: 75849118701     PISSN: 01480227     EISSN: None     Source Type: Journal    
DOI: 10.1029/2008JG000878     Document Type: Article

References (21)

1. Atkins, P. W. (1998), Physical Chemistry, 6th ed., 999 pp., Oxford Univ. Press, Oxford, U. K.
2. Bigeleisen, J., and M. Wolfsberg (1958), Theoretical and experimental aspects of isotope effects in chemical kinetics, Adv. Chem. Phys., 1, 15-76.
3. Eyring, H. (1935a), The activated complex and the absolute rate of chemical reactions, Chem. Rev., 17(1), 65-77.
4. Eyring, H. (1935b), The activated complex in chemical reactions, J. Chem. Phys., 3(2), 107-115.
5. Groffman, P. M., M. A. Altabet, J. K. Bohlke, K. Butterbach-Bahl, M. B. David, M. K. Firestone, A. E. Giblin, T. M. Kana, L. P. Nielsen, and M. A. Voytek (2006), Methods for measuring denitrification: Diverse approches to a difficult problem, Ecol. Appl., 16(6), 2091-2122.
6. Haldane, J. B. S. (1930), Enzymes, 235 pp., Longmans, Green, London.
7. Hunkeler, D., and R. Aravena (2000), Evidence of substantial carbon isotope fractionation among substrate, inorganic carbon, and biomass during aerobic mineralization of 1,2-Dichloroethane by Xanthobacter autotrophicus, Appl. Environ. Microbiol., 66(11), 4870-4876.
8. Knowles, R. (1982), Denitrification, Microbiol. Rev., 46(1), 43-70.
9. Laidler, K. J. (1955), Theory of the transient phase in kinetics, with special reference to enzyme systems, Can. J. Chem., 33, 1614-1624.
10. Li, C., S. Frolking, and T. Frolking (1992), A model of nitrous oxide evolution from soil driven by rainfall events: 1. Model structure and sensitivity, J. Geophys. Res., 97, 59-76.
11. Mariotti, A., J. C. Germon, P. Hubert, P. Kaiser, R. Letolle, A. Tardieux, and P. Tardieux (1981), Experimental determination of nitrogen kinetic isotope fractionation: Some principles. Illustration for the denitrification and nitrification processes, Plant Soil, 62(3), 413-430.
12. Menyailo, O. V., and B. A. Hungate (2006), Stable isotope discrimination during soil denitrification: Production and consumption of nitrous oxide, Global Biogeochem. Cycles, 20, GB3025, doi:10.1029/2005GB002527.
13. Monod, J. (1949), The growth of bacterial cultures, Annu. Rev. Microbial, 3, 371-394.
14. Mosier, A. G. (1998), Soil processes and global change, Biol. Fertil. Soils, 27, 221-229.
15. Perez, T., D. Garcia-Montiel, S. Trumbore, S. Tyler, P. De Camargo, M. Moreira, M. Piccolo, and C. Cerri (2006), Nitrous oxide nitrification and denitrification 15N enrichment factors from amazon forest soils, Ecol. Appl., 16(6), 2153-2167. (Pubitemid 44917576)
16. Rosenzwieg, A. (2000), Nitrous oxide reductase from CuA to CuZ, Nat. Struct. Biol., 7, 169-171.
17. 18O exchange in relation to the mechanism of denitrification of nitrite by Pseudomonas stutzeri, J. Biol. Chem., 263(26), 13,231-13,245.
18. Sprent, J. (1987), The Ecology of the Nitrogen Cycle, 150 pp., Cambridge Univ. Press, New York.
19. Toyoda, S., H. Mutobe, H. Yamagishi, N. Yoshida, and Y. Tanji (2005), Fractionation of N2O isotopomers during production by denitrifier, Soil Biol. Biogeochem., 37, 1535-1545. (Pubitemid 40793118)
20. Vitousek, P. M., J. D. Aber, R. W. Howarth, G. E. Linkens, P. A. Matson, D. W. Schindler, W. H. Schlesinger, and D. G. Tilman (1997), Human alteration of the global nitrogen cycle: sources and consequences, Ecol. Appl., 7(3), 737-750. (Pubitemid 27482019)
21. Wrage, N., G. L. Velthof, M. L. van Beusichem, and O. Oenema (2001), Role of nitrifier denitrification in the production of nitrous oxide, Soil Biol. Biochem., 33, 1723-1732. (Pubitemid 32961521)