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Volumn 283, Issue 1, 2010, Pages 63-72

Sequence and structure of the linear mitochondrial genome of Pneumocystis carinii

Author keywords

AIDS; Genome; Linear; Mitochondria; Pneumocystis

Indexed keywords

CYTOCHROME C OXIDASE; PROTON TRANSPORTING ADENOSINE TRIPHOSPHATE SYNTHASE; REDUCED NICOTINAMIDE ADENINE DINUCLEOTIDE DEHYDROGENASE; RIBOSOME RNA; TRANSFER RNA;

EID: 75649130055     PISSN: 16174615     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00438-009-0498-7     Document Type: Article
Times cited : (17)

References (40)
  • 1
    • 0025183708 scopus 로고
    • Basic local alignment search tool
    • 1:CAS:528:DyaK3MXitVGmsA%3D%3D 2231712
    • SF Altschul W Gish W Miller EW Myers DJ Lipman 1990 Basic local alignment search tool J Mol Biol 215 403 410 1:CAS:528:DyaK3MXitVGmsA%3D%3D 2231712
    • (1990) J Mol Biol , vol.215 , pp. 403-410
    • Altschul, S.F.1    Gish, W.2    Miller, W.3    Myers, E.W.4    Lipman, D.J.5
  • 2
    • 0026529575 scopus 로고
    • Small repeated sequences and the structure of plant mitochondrial genomes
    • 1:STN:280:DyaK38zjs1ektg%3D%3D 1631955
    • C Andre A Levy V Walbot 1992 Small repeated sequences and the structure of plant mitochondrial genomes Trends Genet 8 128 132 1:STN:280: DyaK38zjs1ektg%3D%3D 1631955
    • (1992) Trends Genet , vol.8 , pp. 128-132
    • Andre, C.1    Levy, A.2    Walbot, V.3
  • 4
    • 0027490348 scopus 로고
    • Reaching for the ring: The study of mitochondrial genome structure
    • DOI 10.1007/BF00336777
    • AJ Bendich 1993 Reaching for the ring: the study of mitochondrial genome structure Curr Genet 24 279 290 10.1007/BF00336777 1:CAS:528:DyaK3sXms1emtro%3D 8252636 (Pubitemid 23317030)
    • (1993) Current Genetics , vol.24 , Issue.4 , pp. 279-290
    • Bendlich, A.J.1
  • 5
    • 0029870907 scopus 로고    scopus 로고
    • Structural analysis of mitochondrial DNA molecules from fungi and plants using moving pictures and pulsed-field gel electrophoresis
    • DOI 10.1006/jmbi.1996.0048
    • AJ Bendich 1996 Structural analysis of mitochondrial DNA molecules from fungi and plants using moving pictures and pulsed-field gel electrophoresis J Mol Biol 255 564 588 10.1006/jmbi.1996.0048 1:CAS:528:DyaK28XovVemsA%3D%3D 8568898 (Pubitemid 26107187)
    • (1996) Journal of Molecular Biology , vol.255 , Issue.4 , pp. 564-588
    • Bendich, A.J.1
  • 7
    • 0029592773 scopus 로고
    • A new DNA sequence assembly program
    • 10.1093/nar/23.24.4992 1:CAS:528:DyaK28XlsVCksg%3D%3D 8559656
    • JK Bonfield K Smith R Staden 1995 A new DNA sequence assembly program Nucleic Acids Res 23 4992 4999 10.1093/nar/23.24.4992 1:CAS:528: DyaK28XlsVCksg%3D%3D 8559656
    • (1995) Nucleic Acids Res , vol.23 , pp. 4992-4999
    • Bonfield, J.K.1    Smith, K.2    Staden, R.3
  • 8
    • 0344861878 scopus 로고    scopus 로고
    • Mitochondrial genomes: Anything goes
    • DOI 10.1016/j.tig.2003.10.012
    • G Burger MW Gray BF Lang 2003 Mitochondrial genomes: anything goes Trends Genet 19 709 716 10.1016/j.tig.2003.10.012 1:CAS:528:DC%2BD3sXpt1emsbY%3D 14642752 (Pubitemid 37464849)
    • (2003) Trends in Genetics , vol.19 , Issue.12 , pp. 709-716
    • Burger, G.1    Gray, M.W.2    Lang, B.F.3
  • 9
    • 0031278912 scopus 로고    scopus 로고
    • Proposal for a Pneumocystis genome project
    • 10.1111/j.1550-7408.1997.tb05737.x 1:STN:280:DyaK1c7ntVKluw%3D%3D 9508451
    • MT Cushion J Arnold 1997 Proposal for a Pneumocystis genome project J Eukaryot Microbiol 44 7S 10.1111/j.1550-7408.1997.tb05737.x 1:STN:280: DyaK1c7ntVKluw%3D%3D 9508451
    • (1997) J Eukaryot Microbiol , vol.44
    • Cushion, M.T.1    Arnold, J.2
  • 11
    • 0028090066 scopus 로고
    • The extrachromosomal DNAs of apicomplexan parasites
    • 10.1146/annurev.mi.48.100194.000501 1:CAS:528:DyaK2cXmslKhtrY%3D 7826027
    • JE Feagin 1994 The extrachromosomal DNAs of apicomplexan parasites Annu Rev Microbiol 48 81 104 10.1146/annurev.mi.48.100194.000501 1:CAS:528: DyaK2cXmslKhtrY%3D 7826027
    • (1994) Annu Rev Microbiol , vol.48 , pp. 81-104
    • Feagin, J.E.1
  • 12
    • 0034071121 scopus 로고    scopus 로고
    • Mitochondrial genome diversity in parasites
    • DOI 10.1016/S0020-7519(99)00190-3, PII S0020751999001903
    • JE Feagin 2000 Mitochondrial genome diversity in parasites Int J Parasitol 30 371 390 10.1016/S0020-7519(99)00190-3 1:CAS:528: DC%2BD3cXjt1Ckt70%3D 10731561 (Pubitemid 30145467)
    • (2000) International Journal for Parasitology , vol.30 , Issue.4 , pp. 371-390
    • Feagin, J.E.1
  • 13
    • 0026359706 scopus 로고
    • The putative mitochondrial genome of Plasmodium falciparum
    • 1:STN:280:DyaK3MzltVWhuw%3D%3D 1880762
    • JE Feagin MJ Gardner DH Williamson RJ Wilson 1991 The putative mitochondrial genome of Plasmodium falciparum J Protozool 38 243 245 1:STN:280:DyaK3MzltVWhuw%3D%3D 1880762
    • (1991) J Protozool , vol.38 , pp. 243-245
    • Feagin, J.E.1    Gardner, M.J.2    Williamson, D.H.3    Wilson, R.J.4
  • 15
    • 0027461835 scopus 로고
    • Linear mitochondrial DNAs of yeasts: Frequency of occurence and general features
    • 1:CAS:528:DyaK3sXkt1WqsLs%3D 8455612
    • H Fukuhara F Sor R Drissi N Dinouel S Miyakawa S Rousset M Viola 1993 Linear mitochondrial DNAs of yeasts: frequency of occurence and general features Mol Cell Biol 13 2309 2314 1:CAS:528:DyaK3sXkt1WqsLs%3D 8455612
    • (1993) Mol Cell Biol , vol.13 , pp. 2309-2314
    • Fukuhara, H.1    Sor, F.2    Drissi, R.3    Dinouel, N.4    Miyakawa, S.5    Rousset, S.6    Viola, M.7
  • 16
    • 0033525788 scopus 로고    scopus 로고
    • Mitochondrial evolution
    • DOI 10.1126/science.283.5407.1476
    • MW Gray G Burger BF Lang 1999 Mitochondrial evolution Science 283 1476 1481 10.1126/science.283.5407.1476 1:CAS:528:DyaK1MXhs1ygt70%3D 10066161 (Pubitemid 29133349)
    • (1999) Science , vol.283 , Issue.5407 , pp. 1476-1481
    • Gray, M.W.1    Burger, G.2    Lang, B.F.3
  • 17
    • 40649123235 scopus 로고    scopus 로고
    • The mitochondrial genome of Hydra oligactis (Cnidaria, Hydrozoa) sheds new light on animal mtDNA evolution and cnidarian phylogeny
    • 10.1016/j.gene.2007.12.002 1:CAS:528:DC%2BD1cXitlWksr4%3D 18222615
    • E Kayal DV Lavrov 2008 The mitochondrial genome of Hydra oligactis (Cnidaria, Hydrozoa) sheds new light on animal mtDNA evolution and cnidarian phylogeny Gene 410 177 186 10.1016/j.gene.2007.12.002 1:CAS:528: DC%2BD1cXitlWksr4%3D 18222615
    • (2008) Gene , vol.410 , pp. 177-186
    • Kayal, E.1    Lavrov, D.V.2
  • 18
    • 33646710847 scopus 로고    scopus 로고
    • Complete DNA sequences of the mitochondrial genomes of the pathogenic yeasts Candida orthopsilosis and Candida metapsilosis: Insight into the evolution of linear DNA genomes from mitochondrial telomere mutants
    • DOI 10.1093/nar/gkl327
    • P Kosa M Valach L Tomaska KH Wolfe J Nosek 2006 Complete DNA sequences of the mitochondrial genomes of the pathogenic yeasts Candida orthopsilosis and Candida metapsilosis: insight into the evolution of linear DNA genomes from mitochondrial telomere mutants Nucleic Acids Res 34 2472 2481 10.1093/nar/gkl327 1:CAS:528:DC%2BD28Xks1Sls78%3D 16684995 (Pubitemid 43985685)
    • (2006) Nucleic Acids Research , vol.34 , Issue.8 , pp. 2472-2481
    • Kosa, P.1    Valach, M.2    Tomaska, L.3    Wolfe, K.H.4    Nosek, J.5
  • 19
  • 20
    • 57749183675 scopus 로고    scopus 로고
    • Phylogenomic analyses support the monophyly of Taphrinomycotina, including Schizosaccharomyces fission yeasts
    • 10.1093/molbev/msn221 18922765
    • Y Liu JW Leigh H Brinkmann MT Cushion N Rodriguez-Ezpeleta H Philippe BF Lang 2009 Phylogenomic analyses support the monophyly of Taphrinomycotina, including Schizosaccharomyces fission yeasts Mol Biol Evol 26 27 34 10.1093/molbev/msn221 18922765
    • (2009) Mol Biol Evol , vol.26 , pp. 27-34
    • Liu, Y.1    Leigh, J.W.2    Brinkmann, H.3    Cushion, M.T.4    Rodriguez-Ezpeleta, N.5    Philippe, H.6    Lang, B.F.7
  • 22
    • 0032211421 scopus 로고    scopus 로고
    • Mitochondrial DNA variable number tandem repeats (VNTRs): Utility and problems in molecular ecology
    • DOI 10.1046/j.1365-294x.1998.00495.x
    • DH Lunt LE Whipple BC Hyman 1998 Mitochondrial DNA variable number tandem repeats (VNTRs): utility and problems in molecular ecology Mol Ecol 7 1441 1455 10.1046/j.1365-294x.1998.00495.x 1:CAS:528:DyaK1cXnsFSgt7g%3D 9819900 (Pubitemid 28504062)
    • (1998) Molecular Ecology , vol.7 , Issue.11 , pp. 1441-1455
    • Lunt, D.H.1    Whipple, L.E.2    Hyman, B.C.3
  • 23
    • 37549035345 scopus 로고    scopus 로고
    • Structure and evolution of the atypical mitochondrial genome of Armadillidium vulgare (Isopoda, Crustacea)
    • 10.1007/s00239-007-9037-5 1:CAS:528:DC%2BD2sXhsVKrsL7L 17906827
    • I Marcade R Cordaux V Doublet C Debenest D Bouchon R Raimond 2007 Structure and evolution of the atypical mitochondrial genome of Armadillidium vulgare (Isopoda, Crustacea) J Mol Evol 65 651 659 10.1007/s00239-007-9037-5 1:CAS:528:DC%2BD2sXhsVKrsL7L 17906827
    • (2007) J Mol Evol , vol.65 , pp. 651-659
    • Marcade, I.1    Cordaux, R.2    Doublet, V.3    Debenest, C.4    Bouchon, D.5    Raimond, R.6
  • 24
    • 2642689666 scopus 로고    scopus 로고
    • The hydrogen hypothesis for the first eukaryote
    • DOI 10.1038/32096
    • W Martin M Muller 1998 The hydrogen hypothesis for the first eukaryote Nature 392 37 41 10.1038/32096 1:CAS:528:DyaK1cXhvVOht74%3D 9510246 (Pubitemid 28150580)
    • (1998) Nature , vol.392 , Issue.6671 , pp. 37-41
    • Martin, W.1    Muller, M.2
  • 25
    • 38849149873 scopus 로고    scopus 로고
    • Is there anything new in Pneumocystis jirovecii pneumonia? Changes in P. jirovecii pneumonia over the course of the AIDS epidemic
    • DOI 10.1086/526779
    • A Morris 2008 Is there anything new in Pneumocystis jirovecii pneumonia? Changes in P. jirovecii pneumonia over the course of the AIDS epidemic Clin Infect Dis 46 634 636 10.1086/526779 18190280 (Pubitemid 351263507)
    • (2008) Clinical Infectious Diseases , vol.46 , Issue.4 , pp. 634-636
    • Morris, A.1
  • 26
    • 0344876053 scopus 로고    scopus 로고
    • Mitochondrial genome diversity: Evolution of the molecular architecture and replication strategy
    • DOI 10.1007/s00294-003-0426-z
    • J Nosek L Tomaska 2003 Mitochondrial genome diversity: evolution of the molecular architecture and replication strategy Curr Genet 44 73 84 10.1007/s00294-003-0426-z 1:CAS:528:DC%2BD3sXos1Oktrc%3D 12898180 (Pubitemid 37441602)
    • (2003) Current Genetics , vol.44 , Issue.2 , pp. 73-84
    • Nosek, J.1    Tomaska, L.2
  • 27
    • 0032076536 scopus 로고    scopus 로고
    • Linear mitochondrial genomes: 30 years down the line
    • DOI 10.1016/S0168-9525(98)01443-7
    • J Nosek L Tomaska H Fukuhara Y Suyama L Kovac 1998 Linear mitochondrial genomes: 30 years down the line Trends Genet 14 184 188 10.1016/S0168-9525(98) 01443-7 1:CAS:528:DyaK1cXjt1agt7s%3D 9613202 (Pubitemid 28244242)
    • (1998) Trends in Genetics , vol.14 , Issue.5 , pp. 184-188
    • Nosek, J.1    Tomaska, L.2    Fukuhara, H.3    Suyama, Y.4    Kovac, L.5
  • 28
    • 5644249499 scopus 로고    scopus 로고
    • Complete DNA sequence of the linear mitochondrial genome of the pathogenic yeast Candida parapsilosis
    • DOI 10.1007/s00438-004-1046-0
    • J Nosek M Novotna Z Hlavatovicova DW Ussery J Fajkus L Tomaska 2004 Complete DNA sequence of the linear mitochondrial genome of the pathogenic yeast Candida parapsilosis Mol Genet Genomics 272 173 180 10.1007/s00438-004-1046-0 1:CAS:528:DC%2BD2cXns1eqsL8%3D 15449175 (Pubitemid 39371519)
    • (2004) Molecular Genetics and Genomics , vol.272 , Issue.2 , pp. 173-180
    • Nosek, J.1    Novotna, M.2    Hlavatovicova, Z.3    Ussery, D.W.4    Fajkus, J.5    Tomaska, L.6
  • 29
    • 0036456491 scopus 로고    scopus 로고
    • The complete sequence of the rice (Oryza sativa L.) mitochondrial genome: Frequent DNA sequence acquisition and loss during the evolution of flowering plants
    • DOI 10.1007/s00438-002-0767-1
    • Y Notsu S Masood T Nishikawa N Kubo G Akiduki M Nakazono A Hirai K Kadowaki 2002 The complete sequence of the rice (Oryza sativa L.) mitochondrial genome: frequent DNA sequence acquisition and loss during the evolution of flowering plants Mol Genet Genomics 268 434 445 10.1007/s00438-002-0767-1 1:CAS:528:DC%2BD38XptlWltb0%3D 12471441 (Pubitemid 35435847)
    • (2002) Molecular Genetics and Genomics , vol.268 , Issue.4 , pp. 434-445
    • Notsu, Y.1    Masood, S.2    Nishikawa, T.3    Kubo, N.4    Akiduki, G.5    Nakazono, M.6    Hirai, A.7    Kadowaki, K.8
  • 30
    • 0029928715 scopus 로고    scopus 로고
    • The mitochondrial DNA of Allomyces macrogynus: The complete genomic sequence from an ancestral fungus
    • DOI 10.1006/jmbi.1996.0056
    • B Paquin BF Lang 1996 The mitochondrial DNA of Allomyces macrogynus: the complete genomic sequence from an ancestral fungus J Mol Biol 255 688 701 10.1006/jmbi.1996.0056 1:CAS:528:DyaK28XptFKjsg%3D%3D 8636971 (Pubitemid 26105578)
    • (1996) Journal of Molecular Biology , vol.255 , Issue.5 , pp. 688-701
    • Paquin, B.1    Lang, B.F.2
  • 31
    • 0033736176 scopus 로고    scopus 로고
    • Double-hairpin elements in the mitochondrial DNA of allomyces: Evidence for mobility
    • 1:CAS:528:DC%2BD3cXnvFyqt7s%3D 11070063
    • B Paquin MJ Laforest BF Lang 2000 Double-hairpin elements in the mitochondrial DNA of allomyces: evidence for mobility Mol Biol Evol 17 1760 1768 1:CAS:528:DC%2BD3cXnvFyqt7s%3D 11070063
    • (2000) Mol Biol Evol , vol.17 , pp. 1760-1768
    • Paquin, B.1    Laforest, M.J.2    Lang, B.F.3
  • 32
    • 34648828885 scopus 로고    scopus 로고
    • Children with human immunodeficiency virus infection admitted to a paediatric intensive care unit in South Africa
    • 17526510
    • H Rabie A de Boer S van den Bos MF Cotton S Kling P Goussard 2007 Children with human immunodeficiency virus infection admitted to a paediatric intensive care unit in South Africa J Trop Pediatr 53 4 270 273 17526510
    • (2007) J Trop Pediatr , vol.53 , Issue.4 , pp. 270-273
    • Rabie, H.1    De Boer, A.2    Van Den Bos, S.3    Cotton, M.F.4    Kling, S.5    Goussard, P.6
  • 33
    • 2542429917 scopus 로고    scopus 로고
    • Linear versus circular mitochondrial genomes: Intraspecies variability of mitochondrial genome architecture in Candida parapsilosis
    • 10.1099/mic.0.26988-0 1:CAS:528:DC%2BD2cXktlOltr0%3D 15133118
    • A Rycovska M Valach L Tomaska M Bolotin-Fukuhara J Nosek 2004 Linear versus circular mitochondrial genomes: intraspecies variability of mitochondrial genome architecture in Candida parapsilosis Microbiology 150 1571 1580 10.1099/mic.0.26988-0 1:CAS:528:DC%2BD2cXktlOltr0%3D 15133118
    • (2004) Microbiology , vol.150 , pp. 1571-1580
    • Rycovska, A.1    Valach, M.2    Tomaska, L.3    Bolotin-Fukuhara, M.4    Nosek, J.5
  • 34
    • 33751368193 scopus 로고    scopus 로고
    • Sequence of the mitochondrial genome of Pneumocystis carinii: Implications for biological function and identification of potential drug targets
    • DOI 10.1111/j.1550-7408.2006.00212.x
    • TM Sesterhenn MT Cushion BE Slaven AG Smulian 2006 Sequence of the mitochondrial genome of Pneumocystis carinii: implications for biological function and identification of potential drug targets J Eukaryot Microbiol 53 Suppl 1 S154 S155 10.1111/j.1550-7408.2006.00212.x 1:CAS:528: DC%2BD2sXisF2gtg%3D%3D 17169041 (Pubitemid 44813368)
    • (2006) Journal of Eukaryotic Microbiology , vol.53 , Issue.SUPPL. 1
    • Sesterhenn, T.M.1    Cushion, M.T.2    Slaven, B.E.3    Smulian, A.G.4
  • 36
    • 39749186643 scopus 로고    scopus 로고
    • Mitochondrial genome of the colorless green alga Polytomella capuana: A linear molecule with an unprecedented GC content
    • DOI 10.1093/molbev/msm245
    • DR Smith RW Lee 2008 Mitochondrial genome of the colorless green alga Polytomella capuana: a linear molecule with an unprecedented GC content Mol Biol Evol 25 487 496 10.1093/molbev/msm245 1:CAS:528:DC%2BD1cXjt1CltLo%3D 18222946 (Pubitemid 351301904)
    • (2008) Molecular Biology and Evolution , vol.25 , Issue.3 , pp. 487-496
    • Smith, D.R.1    Lee, R.W.2
  • 37
    • 0032160411 scopus 로고    scopus 로고
    • The genome of Pneumocystis carinii
    • 10.1111/j.1574-695X.1998.tb01183.x 1:CAS:528:DyaK1cXmtFWgsrs%3D 9792057
    • JR Stringer MT Cushion 1998 The genome of Pneumocystis carinii FEMS Immunol Med Microbiol 22 15 26 10.1111/j.1574-695X.1998.tb01183.x 1:CAS:528:DyaK1cXmtFWgsrs%3D 9792057
    • (1998) FEMS Immunol Med Microbiol , vol.22 , pp. 15-26
    • Stringer, J.R.1    Cushion, M.T.2
  • 38
    • 0033197514 scopus 로고    scopus 로고
    • The complete mitochondrial DNA sequences of Nephroselmis olivacea and Pedinomonas minor. Two radically different evolutionary patterns within green algae
    • 10.1105/tpc.11.9.1717 1:CAS:528:DyaK1MXms1ahsr4%3D 10488238
    • M Turmel C Lemieux G Burger BF Lang C Otis I Plante MW Gray 1999 The complete mitochondrial DNA sequences of Nephroselmis olivacea and Pedinomonas minor. Two radically different evolutionary patterns within green algae Plant Cell 11 1717 1730 10.1105/tpc.11.9.1717 1:CAS:528:DyaK1MXms1ahsr4%3D 10488238
    • (1999) Plant Cell , vol.11 , pp. 1717-1730
    • Turmel, M.1    Lemieux, C.2    Burger, G.3    Lang, B.F.4    Otis, C.5    Plante, I.6    Gray, M.W.7
  • 39
    • 48749105850 scopus 로고    scopus 로고
    • Preparation of yeast mitochondrial DNA for direct sequence analysis
    • 10.1007/s00294-008-0200-3 1:CAS:528:DC%2BD1cXptFOrsrY%3D 18568348
    • M Valach L Tomaska J Nosek 2008 Preparation of yeast mitochondrial DNA for direct sequence analysis Curr Genet 54 105 109 10.1007/s00294-008-0200-3 1:CAS:528:DC%2BD1cXptFOrsrY%3D 18568348
    • (2008) Curr Genet , vol.54 , pp. 105-109
    • Valach, M.1    Tomaska, L.2    Nosek, J.3
  • 40
    • 38849180490 scopus 로고    scopus 로고
    • Early predictors of mortality from Pneumocystis jirovecii pneumonia in HIV-infected patients: 1985-2006
    • DOI 10.1086/526778
    • PD Walzer HE Evans AJ Copas SG Edwards AD Grant RF Miller 2008 Early predictors of mortality from Pneumocystis jirovecii pneumonia in HIV-infected patients: 1985-2006 Clin Infect Dis 46 625 633 10.1086/526778 18190281 (Pubitemid 351263506)
    • (2008) Clinical Infectious Diseases , vol.46 , Issue.4 , pp. 625-633
    • Walzer, P.D.1    Evans, H.E.R.2    Copas, A.J.3    Edwards, S.G.4    Grant, A.D.5    Miller, R.F.6


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