-
1
-
-
75649148431
-
Review article Mass spectrometry-based proteomics
-
Aebersold R, Mann M (2003) Review article Mass spectrometry-based proteomics, Nature 422: 189-207.
-
(2003)
Nature
, vol.422
, pp. 189-207
-
-
Aebersold, R.1
Mann, M.2
-
2
-
-
0033948589
-
Automatic poisson peak harvesting for high throughput protein identification
-
Breen EJ, Hopwood FG, Williams KL, Wilkins MR (2000) Automatic poisson peak harvesting for high throughput protein identification. Electrophoresis 21: 2243-2251.
-
(2000)
Electrophoresis
, vol.21
, pp. 2243-2251
-
-
Breen, E.J.1
Hopwood, F.G.2
Williams, K.L.3
Wilkins, M.R.4
-
3
-
-
0037544110
-
Automatic poisson peak harvesting for high throughput protein identification
-
Breen EJ, Holstein WL, Hopwood FG, Smith PE, Thomas ML, et al. (2003) Automatic poisson peak harvesting for high throughput protein identification. Spectroscopy 17: 579-595.
-
(2003)
Spectroscopy
, vol.17
, pp. 579-595
-
-
Breen, E.J.1
Holstein, W.L.2
Hopwood, F.G.3
Smith, P.E.4
Thomas, M.L.5
-
4
-
-
0000341249
-
On the Mixtures of Probability Distributions
-
Chandra S (1997) On the Mixtures of Probability Distributions. Scandinavian Journal of Statistics 4: 105-112.
-
(1997)
Scandinavian Journal of Statistics
, vol.4
, pp. 105-112
-
-
Chandra, S.1
-
5
-
-
18744411077
-
Improved peak detection and quantification of mass spectrometry data acquired from surfaceenhanced laser desorption and ionization by denoising spectra with the undecimated discrete wavelet transform
-
Coombes KR, Tsavachidis S, Morris JS, Baggerly KA, Hung MC, et al. (2005) Improved peak detection and quantification of mass spectrometry data acquired from surfaceenhanced laser desorption and ionization by denoising spectra with the undecimated discrete wavelet transform. Proteomics 5: 4107-4117.
-
(2005)
Proteomics
, vol.5
, pp. 4107-4117
-
-
Coombes, K.R.1
Tsavachidis, S.2
Morris, J.S.3
Baggerly, K.A.4
Hung, M.C.5
-
6
-
-
43649095432
-
Fetal alcohol syndrome in mice detected through proteomics screening of the amniotic fluid
-
Datta S, Turner D, Singh R, Ruset B, Pierce WM, et al. (2008) Fetal alcohol syndrome in mice detected through proteomics screening of the amniotic fluid. Birth Defects Research Part A: Clinical and Molecular Teratology 82: 177-186.
-
(2008)
Birth Defects Research Part A: Clinical and Molecular Teratology
, vol.82
, pp. 177-186
-
-
Datta, S.1
Turner, D.2
Singh, R.3
Ruset, B.4
Pierce, W.M.5
-
8
-
-
0042367739
-
Point: Proteomic patterns in biological fluids: Do they represent the future of cancer diagnostics
-
Diamandis EP (2003) Point: Proteomic patterns in biological fluids: do they represent the future of cancer diagnostics. Clinical Chemistry 49: 1272-1275.
-
(2003)
Clinical Chemistry
, vol.49
, pp. 1272-1275
-
-
Diamandis, E.P.1
-
9
-
-
2542640080
-
Mass spectrometry as a diagnostic and a cancer biomarker discovery tool: Opportunities and potential limitations
-
Diamandis EP (2004a) Mass spectrometry as a diagnostic and a cancer biomarker discovery tool: opportunities and potential limitations. Mol Cell Proteomics 3: 367-378.
-
(2004)
Mol Cell Proteomics
, vol.3
, pp. 367-378
-
-
Diamandis, E.P.1
-
10
-
-
1542378202
-
Analysis of serum proteomic patterns for early cancer diagnosis: Drawing attention to potential problems
-
Diamandis EP (2004b) Analysis of serum proteomic patterns for early cancer diagnosis: drawing attention to potential problems. Journal of Natl Cancer Inst 96: 353-356.
-
(2004)
Journal of Natl Cancer Inst
, vol.96
, pp. 353-356
-
-
Diamandis, E.P.1
-
11
-
-
4544237625
-
Proteomic patterns to identify ovarian cancer: 3 years on
-
Diamandis EP (2004c) Proteomic patterns to identify ovarian cancer: 3 years on. Expert Rev Mol Diagn 4: 575-577.
-
(2004)
Expert Rev Mol Diagn
, vol.4
, pp. 575-577
-
-
Diamandis, E.P.1
-
13
-
-
24644448186
-
-
(In) John M. Walker (ed), The Proteomics Protocols Handbook Humana Press
-
Gasteiger E, Hoogland C, Gattiker A, Duvaud S, Wilkins MR, et al. (2005) Protein Identification and Analysis Tools on the ExPASy Server; (In) John M. Walker (ed): The Proteomics Protocols Handbook Humana Press.
-
(2005)
Protein Identification and Analysis Tools On the Expasy Server
-
-
Gasteiger, E.1
Hoogland, C.2
Gattiker, A.3
Duvaud, S.4
Wilkins, M.R.5
-
14
-
-
33745442821
-
The MALDI-TOF mass spectrometric view of the plasma proteome and peptidome
-
Hortin GL (2006) The MALDI-TOF mass spectrometric view of the plasma proteome and peptidome. Clin Chem 52: 1223-1237.
-
(2006)
Clin Chem
, vol.52
, pp. 1223-1237
-
-
Hortin, G.L.1
-
15
-
-
0032576467
-
Minimum Hellinger distance estimation for finite Poisson mixtures
-
Karlis D, Xekalaki E (1998) Minimum Hellinger distance estimation for finite Poisson mixtures. Computational Statistical Data Analysis 29: 81-103.
-
(1998)
Computational Statistical Data Analysis
, vol.29
, pp. 81-103
-
-
Karlis, D.1
Xekalaki, E.2
-
16
-
-
0037469124
-
Choosing initial values for the EM algorithm for finite Poisson mixtures
-
Karlis D, Xekalaki E (2003) Choosing initial values for the EM algorithm for finite Poisson mixtures. Computational Statistical Data Analysis 41: 577-590.
-
(2003)
Computational Statistical Data Analysis
, vol.41
, pp. 577-590
-
-
Karlis, D.1
Xekalaki, E.2
-
20
-
-
19944362482
-
Enhancement of sensitivity and resolution of surface-enhanced laser desorption/ionization timeof-flight mass spectrometric records for serum peptides using time-series analysis techniques
-
Malyarenko DI, Cooke WE, Adam BL, Malik G, Chen H, et al. (2005) Enhancement of sensitivity and resolution of surface-enhanced laser desorption/ionization timeof-flight mass spectrometric records for serum peptides using time-series analysis techniques. Clin Chem 51: 65-74.
-
(2005)
Clin Chem
, vol.51
, pp. 65-74
-
-
Malyarenko, D.I.1
Cooke, W.E.2
Adam, B.L.3
Malik, G.4
Chen, H.5
-
21
-
-
34147114217
-
LIMPIC: A computational method for the separation of protein MALDI-TOF-MS signals from noise
-
Mantini D, Petrucci F, Pieragostino D, Del Boccio P, Di Nicola M, et al. (2007) LIMPIC: a computational method for the separation of protein MALDI-TOF-MS signals from noise. BMC Bioinformatics 8: 1471-2105.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 1471-2105
-
-
Mantini, D.1
Petrucci, F.2
Pieragostino, D.3
del Boccio, P.4
di Nicola, M.5
-
22
-
-
42549103676
-
Precision Enhancement of MALDI-TOF-MS Using High Resolution Peak Detection and Label-Free Alignment
-
Tracy MB, et al. (2008) Precision Enhancement of MALDI-TOF-MS Using High Resolution Peak Detection and Label-Free Alignment. Proteomics 8: 1530-1538.
-
(2008)
Proteomics
, vol.8
, pp. 1530-1538
-
-
Tracy, M.B.1
-
23
-
-
0011951562
-
Calculation of isotopic abundance distributions
-
McCloskey J (1990) Calculation of isotopic abundance distributions. Methods in Enzymology 193: 882-886.
-
(1990)
Methods In Enzymology
, vol.193
, pp. 882-886
-
-
McCloskey, J.1
-
25
-
-
18744384734
-
Feature extraction and quantification for mass spectrometry in biomedical applications using the mean spectrum
-
Morris JS, Coombes KR, Koomen J, Baggerly KA, Kobayashi R (2005) Feature extraction and quantification for mass spectrometry in biomedical applications using the mean spectrum. Bioinformatics 21: 1764-1775.
-
(2005)
Bioinformatics
, vol.21
, pp. 1764-1775
-
-
Morris, J.S.1
Coombes, K.R.2
Koomen, J.3
Baggerly, K.A.4
Kobayashi, R.5
-
26
-
-
35748977591
-
Improved model-based, platform-independent feature extraction for mass spectrometry
-
Noy K, Fasulo D (2007) Improved model-based, platform-independent feature extraction for mass spectrometry. Bioinformatics 23: 2528-2535.
-
(2007)
Bioinformatics
, vol.23
, pp. 2528-2535
-
-
Noy, K.1
Fasulo, D.2
-
27
-
-
23944492134
-
Overview of the HUPO Plasma Proteome Project: Results from the pilot phase with 35 collaborating laboratories and multiple analytical groups, generating a core dataset of 3020 proteins and a publicly-available database
-
Omenn GS, States DJ, Adamski M, Blackwell TW, Menon R, et al. (2005) Overview of the HUPO Plasma Proteome Project: results from the pilot phase with 35 collaborating laboratories and multiple analytical groups, generating a core dataset of 3020 proteins and a publicly-available database. Proteomics 5: 3226-3245.
-
(2005)
Proteomics
, vol.5
, pp. 3226-3245
-
-
Omenn, G.S.1
States, D.J.2
Adamski, M.3
Blackwell, T.W.4
Menon, R.5
-
28
-
-
0037116832
-
Use of proteomic patterns in serum to identify ovarian cancer
-
Petricoin EF, Ardekani AM, Hitt BA, Levine PJ, Fusaro VA, (2002a) Use of proteomic patterns in serum to identify ovarian cancer. Lancet 359: 572-577.
-
(2002)
Lancet
, vol.359
, pp. 572-577
-
-
Petricoin, E.F.1
Ardekani, A.M.2
Hitt, B.A.3
Levine, P.J.4
Fusaro, V.A.5
-
29
-
-
0036718796
-
Clinical proteomics: Translating benchside promise into bedside reality
-
Petricoin EF, Zoon KC, Kohn EC, Barrett JC, Liotta LA (2002b) Clinical proteomics: translating benchside promise into bedside reality. Nat Rev Drug Discov 1: 683-695.
-
(2002)
Nat Rev Drug Discov
, vol.1
, pp. 683-695
-
-
Petricoin, E.F.1
Zoon, K.C.2
Kohn, E.C.3
Barrett, J.C.4
Liotta, L.A.5
-
30
-
-
0037120949
-
Serum proteomic patterns for detection of prostate cancer
-
Petricoin EF 3rd, Ornstein DK, Paweletz CP, Ardekani A, Hackett PS, et al. (2002c) Serum proteomic patterns for detection of prostate cancer. Journal of National Cancer Institue 94: 1576-1578.
-
(2002)
Journal of National Cancer Institue
, vol.94
, pp. 1576-1578
-
-
Petricoin 3rd, E.F.1
Ornstein, D.K.2
Paweletz, C.P.3
Ardekani, A.4
Hackett, P.S.5
-
31
-
-
0037945662
-
Proteomic analysis at the bedside: Early detection of cancer
-
Petricoin EF, Liotta LA (2002d) Proteomic analysis at the bedside: early detection of cancer. Trends Biotechnol 20: S30-34.
-
(2002)
Trends Biotechnol
, vol.20
-
-
Petricoin, E.F.1
Liotta, L.A.2
-
32
-
-
10244239405
-
Standardization and denoising algorithms for mass spectra to classify whole-organism bacterial specimens
-
Satten GA, Datta S, Moura H, Woolfitt AR, Carvalho MG, et al. (2004) Standardization and denoising algorithms for mass spectra to classify whole-organism bacterial specimens. Bioinformatics 20: 3128-3136.
-
(2004)
Bioinformatics
, vol.20
, pp. 3128-3136
-
-
Satten, G.A.1
Datta, S.2
Moura, H.3
Woolfitt, A.R.4
Carvalho, M.G.5
-
33
-
-
11144265071
-
Normalization, baseline correction and alignment of highthroughput mass spectrometry data
-
Sauve AC, Speed TP (2004) Normalization, baseline correction and alignment of highthroughput mass spectrometry data. Proceedings Gensips.
-
(2004)
Proceedings Gensips
-
-
Sauve, A.C.1
Speed, T.P.2
-
34
-
-
0031002520
-
Detailed peptide characterisation using PEPTIDEMASS - A World-Wide Web accessible tool
-
Wilkins MR, Lindskog I, Gasteiger E, Bairoch A, Sanchez JC, et al. (1997) Detailed peptide characterisation using PEPTIDEMASS - a World-Wide Web accessible tool; Electrophoresis 18: 403-408.
-
(1997)
Electrophoresis
, vol.18
, pp. 403-408
-
-
Wilkins, M.R.1
Lindskog, I.2
Gasteiger, E.3
Bairoch, A.4
Sanchez, J.C.5
-
35
-
-
0141738784
-
Comparison of statistical methods for classification of ovarian cancer using mass spectrometry data
-
Wu B, Abbott T, Fishman D, McMurray W, Mor G, et al. (2003) Comparison of statistical methods for classification of ovarian cancer using mass spectrometry data. Bioinformatics 19: 1636-1643.
-
(2003)
Bioinformatics
, vol.19
, pp. 1636-1643
-
-
Wu, B.1
Abbott, T.2
Fishman, D.3
McMurray, W.4
Mor, G.5
-
37
-
-
0345166891
-
Detection of cancerspecific markers amid massive mass spectral data
-
Zhu W, Wang X, Ma Y, Rao M, Glimm J, et al. (2003) Detection of cancerspecific markers amid massive mass spectral data. Proc Natl Acad Sci USA 100: 14666-14671.
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 14666-14671
-
-
Zhu, W.1
Wang, X.2
Ma, Y.3
Rao, M.4
Glimm, J.5
|