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Volumn 75, Issue 2, 2010, Pages 342-352

X-ray diffraction, solution structure, and computational studies on derivatives of (3-sec-butyl-2,3-dihydro-1H-isoquinolin-4-ylidene)acetic acid: Compounds with activity as calpain inhibitors

Author keywords

[No Author keywords available]

Indexed keywords

CALPAINS; CHEMICAL EQUATIONS; COMPUTATIONAL STUDIES; CRYSTAL PACKINGS; CYSTEINE PROTEASE; DFT CALCULATION; DOUBLE BONDS; INTERMOLECULAR INTERACTIONS; NMR SPECTROSCOPY; PATHOLOGICAL CONDITIONS; PHYSIOLOGICAL PROCESS; POTENT INHIBITOR; SOLID-STATE STRUCTURES; SOLUTION STRUCTURES; STRUCTURE ACTIVITY RELATIONSHIPS; THERAPEUTIC AGENTS; X-RAY DIFFRACTION DATA;

EID: 75349090735     PISSN: 00223263     EISSN: None     Source Type: Journal    
DOI: 10.1021/jo902091u     Document Type: Article
Times cited : (4)

References (78)
  • 1
    • 0004169648 scopus 로고    scopus 로고
    • 2nd ed.;Wermuth, C. G, Ed, Elsevier/Academic Press: San Diego, CA
    • (a) The Practice of Medicinal Chemistry, 2nd ed.;Wermuth, C. G., Ed.; Elsevier/Academic Press: San Diego, CA, 2003.
    • (2003) The Practice of Medicinal Chemistry
  • 7
    • 38549096018 scopus 로고    scopus 로고
    • MEROPS: the peptidase database. Rawlings, N. D.; Morton, F. R.; Kok, C. Y.; Kong, J.; Barrett, A. J. Nucleic Acids Res. 2008, 36, D320-325. http://merops.sanger.ac.uk/ (last accessed Sept 24th, 2009). (3) (a) Friedrich, P. Biochem. Biophys. Res. Commun. 2004, 323, 1131-1133.
    • (d) MEROPS: the peptidase database. Rawlings, N. D.; Morton, F. R.; Kok, C. Y.; Kong, J.; Barrett, A. J. Nucleic Acids Res. 2008, 36, D320-325. http://merops.sanger.ac.uk/ (last accessed Sept 24th, 2009). (3) (a) Friedrich, P. Biochem. Biophys. Res. Commun. 2004, 323, 1131-1133.
  • 14
    • 75349098682 scopus 로고    scopus 로고
    • Croall, D.; Ersfeld, K. Genome Biol. 2007, 8, 218. (5) (a) Gafni, J.; Ellerby, L. M. J. Neurosci. 2002, 22, 4842-4849.
    • (e) Croall, D.; Ersfeld, K. Genome Biol. 2007, 8, 218. (5) (a) Gafni, J.; Ellerby, L. M. J. Neurosci. 2002, 22, 4842-4849.
  • 18
    • 27844462036 scopus 로고    scopus 로고
    • For overviews of calpain inhibitors, see: a
    • For overviews of calpain inhibitors, see: (a) Neffe, A.; Abell, A. Curr. Opin. Drug Discovery Dev. 2005, 8, 684-700.
    • (2005) Curr. Opin. Drug Discovery Dev , vol.8 , pp. 684-700
    • Neffe, A.1    Abell, A.2
  • 22
    • 33746617495 scopus 로고    scopus 로고
    • Chicharro, R.; Alonso, M.; Mazo, M. T.; Arán, V. J.; Herradon, B. ChemMedChem 2006, 1, 710-714. (9) Herradon, B.; Chicharro, R.; Arán, V. J.; Alonso, M. PCT Appl. ES2005/070171.
    • Chicharro, R.; Alonso, M.; Mazo, M. T.; Arán, V. J.; Herradon, B. ChemMedChem 2006, 1, 710-714. (9) Herradon, B.; Chicharro, R.; Arán, V. J.; Alonso, M. PCT Appl. ES2005/070171.
  • 23
    • 40049090534 scopus 로고    scopus 로고
    • Chicharro, R.; Alonso, M.; Arán, V. J.; Herradon, B. Tetrahedron Lett. 2008, 49, 2275-2279. (11) Despite attempting additional refinement, a better quality of X-ray diffraction data for compound 4 was not achieved. Nevertheless, the crystallographic data of this compound were good enough to be used as the starting point for DFT calculations.
    • Chicharro, R.; Alonso, M.; Arán, V. J.; Herradon, B. Tetrahedron Lett. 2008, 49, 2275-2279. (11) Despite attempting additional refinement, a better quality of X-ray diffraction data for compound 4 was not achieved. Nevertheless, the crystallographic data of this compound were good enough to be used as the starting point for DFT calculations.
  • 24
    • 84944438568 scopus 로고    scopus 로고
    • Flack, H. Acta Crystallogr., Sect. A: Found. Crystallogr. 1983, 39, 876-881. (13) (a) Johnson, F. Chem. Rev. 1968, 68, 375-413.
    • Flack, H. Acta Crystallogr., Sect. A: Found. Crystallogr. 1983, 39, 876-881. (13) (a) Johnson, F. Chem. Rev. 1968, 68, 375-413.
  • 25
  • 26
    • 0024292833 scopus 로고    scopus 로고
    • ACambridge Structural Database (CSD) search has been performed with the program ConQuest 1.10 to identify the conformational preferences of C=C-C=O torsion angle in α,β-unsaturated carboxylic acids and esters. Dihedral angle statistics were analyzed with the program Vista (see Figures S1 and S2, Supporting Information). Examination of 260 X-ray structures containing α,β-unsaturated ester moiety led to 271 s-cis and 22 s-trans conformations (ratio s-cis/s-trans: 12.3/1), whereas the acid search yielded 133 compounds, finding 107 s-cis and 64 s-trans conformers (ratio s-cis/s-trans: 1.67/1). (15) (a) Levitt, M.; Perutz, M. F. J. Mol. Biol. 1988, 201, 751-754.
    • ACambridge Structural Database (CSD) search has been performed with the program ConQuest 1.10 to identify the conformational preferences of C=C-C=O torsion angle in α,β-unsaturated carboxylic acids and esters. Dihedral angle statistics were analyzed with the program Vista (see Figures S1 and S2, Supporting Information). Examination of 260 X-ray structures containing α,β-unsaturated ester moiety led to 271 s-cis and 22 s-trans conformations (ratio s-cis/s-trans: 12.3/1), whereas the acid search yielded 133 compounds, finding 107 s-cis and 64 s-trans conformers (ratio s-cis/s-trans: 1.67/1). (15) (a) Levitt, M.; Perutz, M. F. J. Mol. Biol. 1988, 201, 751-754.
  • 37
    • 75349104077 scopus 로고    scopus 로고
    • TheH3 3 3Xdistance is less than the sum of the corresponding van der Waals radii and the C-H· · ·X angle is greater than 100°. (a) Desiraju, G. R.; Steiner, T. The Weak Hydrogen Bond in Structural Chemistry and Biology; Oxford University Press/International Union of Crystallography: Oxford, UK, 1999.
    • TheH3 3 3Xdistance is less than the sum of the corresponding van der Waals radii and the C-H· · ·X angle is greater than 100°. (a) Desiraju, G. R.; Steiner, T. The Weak Hydrogen Bond in Structural Chemistry and Biology; Oxford University Press/International Union of Crystallography: Oxford, UK, 1999.
  • 46
    • 0037189056 scopus 로고    scopus 로고
    • Karolak-Wojciechowska, J.; Czylkowski, R.; Karczmarzyk, Z.; Paluchowska, M. H.; Rys, B.; Szneler, E.; Mokrosz, M. J. J. Mol. Struct. 2002, 612, 39-47. (23) The experimental assignment was based on HMBC correlations: Bax, A.; Summers, M. F. J. Am. Chem. Soc. 2002, 108, 2093-2094.
    • Karolak-Wojciechowska, J.; Czylkowski, R.; Karczmarzyk, Z.; Paluchowska, M. H.; Rys, B.; Szneler, E.; Mokrosz, M. J. J. Mol. Struct. 2002, 612, 39-47. (23) The experimental assignment was based on HMBC correlations: Bax, A.; Summers, M. F. J. Am. Chem. Soc. 2002, 108, 2093-2094.
  • 55
    • 2342566581 scopus 로고    scopus 로고
    • This mechanistic feature of activation is unique between protease, and it has been advantageously used to design nonelectrophilic calpain inhibitors, see: Montero, A, Mann, E, Chana, A, Herradon, B. Chem. Biodiversity 2004, 1, 442-457
    • (d) This mechanistic feature of activation is unique between protease, and it has been advantageously used to design nonelectrophilic calpain inhibitors, see: Montero, A.; Mann, E.; Chana, A.; Herradon, B. Chem. Biodiversity 2004, 1, 442-457.
  • 57
    • 75349107501 scopus 로고    scopus 로고
    • Although the electrophilicity of the conjugate double bonds in the carboxylates is expected to be lower than that in the corresponding esters, we evaluated both kinds of compounds as calpain inhibitors since they can act through the nonelectrophilic mechanism indicated above
    • (f) Although the electrophilicity of the conjugate double bonds in the carboxylates is expected to be lower than that in the corresponding esters, we evaluated both kinds of compounds as calpain inhibitors since they can act through the nonelectrophilic mechanism indicated above.
  • 61
    • 75349103435 scopus 로고    scopus 로고
    • Baranovski, V. I.; Denisova, A. S.; Kuklo, L. I. THEOCHEM 2006, 759, 111-115. (29) For additional information about the theoretical background of the reactivity indices see: Alonso, M.; Casado, S; Miranda, C.; Tarazona, J. V.; Navas, J. M.; Herradon, B. Chem. Res. Toxicol. 2008, 21, 643-658. (30) Hosseini, M. W. Acc. Chem. Res. 2005, 38, 313-323.
    • Baranovski, V. I.; Denisova, A. S.; Kuklo, L. I. THEOCHEM 2006, 759, 111-115. (29) For additional information about the theoretical background of the reactivity indices see: Alonso, M.; Casado, S; Miranda, C.; Tarazona, J. V.; Navas, J. M.; Herradon, B. Chem. Res. Toxicol. 2008, 21, 643-658. (30) Hosseini, M. W. Acc. Chem. Res. 2005, 38, 313-323.
  • 65
    • 36148966165 scopus 로고    scopus 로고
    • Desiraju, G. R. Angew. Chem., Int. Ed. 2007, 46, 8342-8356. (32) Sheldrick, G. M. SADABS, Program for Absorption Corrections Using Bruker CCC Detectors, University of Göttingen, Göttingen, Germany, 1986.
    • (d) Desiraju, G. R. Angew. Chem., Int. Ed. 2007, 46, 8342-8356. (32) Sheldrick, G. M. SADABS, Program for Absorption Corrections Using Bruker CCC Detectors, University of Göttingen, Göttingen, Germany, 1986.
  • 66
    • 0004150157 scopus 로고    scopus 로고
    • Program for Crystal Structure Solution, University of Göttingen, Göttingen, Germany
    • Sheldrick, G. M. SHELXTL-PC, Program for Crystal Structure Solution, University of Göttingen, Göttingen, Germany, 1997.
    • (1997) SHELXTL-PC
    • Sheldrick, G.M.1
  • 67
    • 75349094285 scopus 로고    scopus 로고
    • CSD 2.0, New Features for the Visualization and Investigation of Crystal Structures;
    • MERCURY, CSD 2.0, New Features for the Visualization and Investigation of Crystal Structures;
    • MERCURY
  • 69
    • 33646767009 scopus 로고    scopus 로고
    • ORTEP-3, for Windows; Farrugia, L. J. J. Appl. Crystallogr. 1997, 30, 565-566. Web address: http://www.chem.gla.ac.uk/~louis/ software/ortep3/.
    • ORTEP-3, for Windows; Farrugia, L. J. J. Appl. Crystallogr. 1997, 30, 565-566. Web address: http://www.chem.gla.ac.uk/~louis/ software/ortep3/.
  • 70
    • 75349089613 scopus 로고    scopus 로고
    • Frisch, M. J, Trucks, G. W, Schlegel, H. B, Scuseria, G. E, Robb, M. A, Cheeseman, J. R, Montgomery, J. A, Jr, Vreven, T, Kudin, K. N, Burant, J. C, Millam, J. M, Iyengar, S. S, Tomasi, J, Barone, V, Mennucci, B, Cossi, M, Scalmani, G, Rega, N, Petersson, G. A, Nakatsuji, H, Hada, M, Ehara, M, Toyota, K, Fukuda, R, Hasegawa, J, Ishida, M, Nakajima, T, Honda, Y, Kitao, O, Nakai, H, Klene, M, Li, X, Knox, J. E, Hratchian, H. P, Cross, J. B, Adamo, C, Jaramillo, J, Gomperts, R, Stratmann, R. E, Yazyev, O, Austin, A. J, Cammi, R, Pomelli, C, Ochterski, J. W, Ayala, P. Y, Morokuma, K, Voth, G. A, Salvador, P, Dannenberg, J. J, Zakrzewski, V. G, Dapprich, S, Daniels, A. D, Strain, M. C, Farkas, O, Malick, D. K, Rabuck, A. D, Raghavachari, K, Foresman, J. B, Ortiz, J. V, Cui, Q, Baboul, A. G, Clifford, S, Cioslowski, J, Stefanov, B. B, Liu, G, Liashenko, A, Piskorz, P, Komaromi, I, Martin, R. L, Fox, D. J, Keith, T, Al-La
    • Frisch, M. J.; Trucks, G. W.; Schlegel, H. B.; Scuseria, G. E.; Robb, M. A.; Cheeseman, J. R.; Montgomery, J. A., Jr.; Vreven, T.; Kudin, K. N.; Burant, J. C.; Millam, J. M.; Iyengar, S. S.; Tomasi, J.; Barone, V.; Mennucci, B.; Cossi, M.; Scalmani, G.; Rega, N.; Petersson, G. A.; Nakatsuji, H.; Hada, M.; Ehara, M.; Toyota, K.; Fukuda, R.; Hasegawa, J.; Ishida, M.; Nakajima, T.; Honda, Y.; Kitao, O.; Nakai, H.; Klene, M.; Li, X.; Knox, J. E.; Hratchian, H. P.; Cross, J. B.; Adamo, C.; Jaramillo, J.; Gomperts, R.; Stratmann, R. E.; Yazyev, O.; Austin, A. J.; Cammi, R.; Pomelli, C.; Ochterski, J. W.; Ayala, P. Y.; Morokuma, K.; Voth, G. A.; Salvador, P.; Dannenberg, J. J.; Zakrzewski, V. G.; Dapprich, S.; Daniels, A. D.; Strain, M. C.; Farkas, O.; Malick, D. K.; Rabuck, A. D.; Raghavachari, K.; Foresman, J. B.; Ortiz, J. V.; Cui, Q.; Baboul, A. G.; Clifford, S.; Cioslowski, J.; Stefanov, B. B.; Liu, G.; Liashenko, A.; Piskorz, P.; Komaromi, I.; Martin, R. L.; Fox, D. J.; Keith, T.; Al-Laham, M. A.; Peng, C. Y.; Nanayakkara, A.; Challacombe, M.; Gill, P. M. W.; Johnson, B.; Chen, W.; Wong, M. W.; Gonzalez, C.; Pople, J. A. Gaussian 03, revision B.04; Gaussian, Inc., Pittsburgh, PA, 2003.
  • 73
    • 0345491105 scopus 로고    scopus 로고
    • Lee, C. T.; Yang, W. T.; Parr, R. G. Phys. Rev. B 1988, 37, 785-789. (40) (a) Halgren, T. A. J. Comput. Chem. 1996, 17, 490-641.
    • Lee, C. T.; Yang, W. T.; Parr, R. G. Phys. Rev. B 1988, 37, 785-789. (40) (a) Halgren, T. A. J. Comput. Chem. 1996, 17, 490-641.


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