Molecular phylogeny and spore evolution of Entolomataceae

Persoonia: Molecular Phylogeny and Evolution of Fungi

Volumn 23, Issue , 2009, Pages 147-176

  Co David, D ^a   Langeveld, D ^a   Noordeloos, M E ^a  

^a UNIVERSITEIT LEIDEN BRANCH   (Netherlands)

Author keywords

Clitopilus; Entoloma; Entolomataceae; Rhodocybe; Rhodogaster; Richoniella spore evolution

Indexed keywords

BACTERIA (MICROORGANISMS); CLITOPILUS; ENTOLOMA; ENTOLOMATACEAE; RHODOCYBE;

EID: 75149178123     PISSN: 00315850     EISSN: None     Source Type: Journal    
DOI: 10.3767/003158509X480944     Document Type: Article

References (52)

1. Agerer R. 1997. Entoloma sinuatum (Bull.: Fr.) Kummer + Salix spec. Descriptions of Ectomyccorrhizae 2: 13-18.
2. Agerer R, Waller K. 1993. Mycorrhizae of Entoloma saepium: parasitism or symbiosis? Mycorrhiza 3, 4: 145-154.
3. Antibus RK, Croxdale JG, Miller OK, Linkins AE. 1981. Ectomycorrhizal fungi on Salix rotundifolia III. Resynthesized mycorrhizal complexes and their surface phosphatase activities. Canadian Journal of Botany 59, 12: 2458-2465.
4. Baroni TJ. 1981. A revision of the genus Rhodocybe Maire (Agaricales). Beihefte zur Nova Hedwigia 67. Cramer, Germany.
5. Baroni TJ, Largent DL. 1989. The genus Rhodocybe: new combinations and a revised key to the section Rhodophana in North America. Mycotaxon 34, 1: 47-53.
6. Baroni TJ, Largent DL. 1993. The enigma of Entoloma nitidum Quél. Observations on its occurrence in North America and proposal for realignment in the Entolomataceae (Agaricales) [abstract]. Inoculum 44, 2: 26.
7. Baroni TJ, Petersen RH. 1987. Rhodocybella, a new genus in the Entolomataceae. Mycologia 79: 358-361.
8. Bidartondo M, Bruns TD, Blackwell M, et al. 2008. Preserving accuracy in Genbank. Science 319: 1616.
9. Castellano MA, Smith JE, O'Dell T, Cázares E, Nugent S. 1999. Handbook to Strategy 1. Fungal Species in the Northwest Forest Plan. United States Department of Agriculture Forest Service, General Technical Report PNW-GTR-476, USA.
10. Clémençon H. 1997. Anatomie der Hymenomyceten. Kommissionsverlag F. Flück-Wirth, Switzerland.
11. Clémençon H, Emmett V, Emmett E. 2004. Cytology and plectology of the Hymenomycetes. Bibliotheca Mycologica 199. Cramer, Germany.
12. Darlu P, Lecointre G. 2002. When does the incongruence length difference test fail? Molecular Biology and Evolution 19, 4: 432-437.
13. Dolphin K, Belshaw R, Orme CDL, Donald LJ, Quicke DLJ. 2000. Noise and incongruence: interpreting results of the incongruence length difference test. Molecular Phylogenetics and Evolution 17, 3: 401-406.
14. Doyle JJ, Doyle JL. 1990. Isolation of plant DNA from fresh tissue. Focus 12: 13-15.
15. Farris JS, Källersjö M, Kluge AG, Bult C. 1994. Testing significance of congruence. Cladistics 10: 315-319.
16. Gates GM, Noordeloos ME. 2007. Preliminary studies in the genus Entoloma in Tasmania I. Persoonia 19: 157-226.
17. Guindon S, Gascuel O. 2003. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Systematic Biology 52: 696-704.
18. Hofstetter V, Clémençon H, Vilgalys R, Moncalvo JM. 2002. Phylogenetic analyses of the Lyophylleae (Agaricales, Basidiomycetes) based on nuclear and mitochondrial rDNA sequences. Mycological Research 106, 9: 1043-1059.
19. Horak E. 1973. Fungi Agaricini Novazelandiae. Entoloma (Fr.) and related genera. Beihefte Nova Hedwigia 43. Cramer, Germany.
20. Horak E. 1980. Entoloma (Agaricales) in Indomalaya and Australasia. Beihefte Nova Hedwigia 65. Cramer, Germany.
21. Horak E. 2008. Agaricales of New Zealand 1: Pluteaceae Entolomataceae. The fungi of New Zealand vol. 5. Fungal Diversity Press, Hong Kong.
22. Huelsenbeck JP, Ronquist F. 2001. MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17: 754-755.
23. Kendrick B. 1994. Evolution in action: from mushrooms to truffles I. McIlvainea 11, 2: 34-38.
24. Kirk MP, Cannon PF, Minter DW, Stalpers JA. 2008. Dictionary of the Fungi. 10th edn. CABI Publishing, UK.
25. Kobayashi H, Hatano K. 2001. A morphological study of the mycorrhiza of Entoloma clypeatum f. hybridum on Rosa multiflora. Mycoscience 42: 83-90.
26. Kühner R. 1980. Les grandes lignes de la classification des Pluteales et leur bases. Bulletin Mensuel de la Sociéte Linnéenne de Lyon 49: 357-430.
27. Largent DL. 1977. The genus Leptonia on the Pacific Coast of the United States including a study of North American types. Bibliotheca Mycologica 55. Cramer, Germany.
28. Largent DL. 1994. Entolomatoid fungi of the Pacific Northwest and Alaska. Mad River Press, USA.
29. Largent DL, Benedict RG. 1971. Studies in Rhodophylloid Fungi 1: generic concepts. Madrono 21: 32-39.
30. Manimohan P, Noordeloos ME, Dhanya AM. 2006. Studies on the genus Entoloma (Basidiomycetes, Agaricales) in Kerala State, India. Persoonia 19: 45-94.
31. Matheny PB. 2005. Improving phylogenetic inference of mushrooms with RPB1 and RPB2 nucleotide sequences (Inocybe; Agaricales). Molecular Phylogenetics and Evolution 35, 1: 1-20.
32. Matheny PB, Curtis JM, Hofstetter V, et al. 2006. Major clades of Agaricales: a multilocus phylogenetic overview. Mycologia 98: 984-997.
33. Moncalvo J-M, Vilgalys R, Redhead SA, et al. 2002. One hundred and seventeen clades of euagarics. Molecular Phylogenetics and Evolution 23: 357-400.
34. Montecchio L, Roca S, Courty P-E, Garbaye J. 2006. Entoloma nitidum Quél. + Carpinus betulus L. Descriptions of Ectomycorrhizae 9/10: 33-38.
35. Müller K. 2004. PRAP-computation of Bremer support for large data sets. Molecular Phylogenetics and Evolution 31: 780-782.
36. Noordeloos ME. 1981. Introduction to the taxonomy of the genus Entoloma sensu lato (Agaricales). Persoonia 11: 121-151.
37. Noordeloos ME. 1992. Entoloma s.l. Funghi Europaei, vol. 5. Giovanna Biella, Italy.
38. Noordeloos ME. 2004. Entoloma s.l. Funghi Europaei, vol. 5a. Edizione Candusso, Italy.
39. Nylander JAA. 2004. MrModeltest v2. Evolutionary Biology Center, Uppsala University, Sweden.
40. Orton PD. 1960. New checklist of British Agarics and Boleti. III. Notes on genera and species in the list. Transactions of the British Mycological Society 43: 159-439.
41. Orton PD. 1991. A revised list of the British species of Entoloma sensu lato. Mycologist 5, 3: 123-138.
42. Pegler DN, Young TWK. 1978. Entolomataceae Kotl. & Pouz. World Pollen and Spore Flora 7: 1-24. Almqvist & Wiksell, Sweden.
43. Pegler DN, Young TWK. 1979. Spore form and phylogeny of Entolomataceae. Beihefte zur Sydowia 8: 290-303. Berger, Austria
44. Peintner U, Bougher NL, Castellano MA, et al. 2001. Multiple origins of sequestrate fungi related to Cortinarius (Cortinariaceae). American Journal of Botany 88: 2168-2179.
45. Reynolds ES. 1963. The use of lead citrate at high pH as an electron-opaque stain in electron microscopy. Journal of Cell Biology 17: 208-212.
46. Romagnesi H. 1974. Essai d'une classification des Rhodophylles. Bulletin Mensuel de la Société Linnéenne de Lyon 43: 325-332.
47. Romagnesi H. 1978. Les fondéments de la taxinomie des Rhodophylles et leur classification. Beihefte Nova Hedwigia 59: 1-80. Cramer, Germany.
48. Ronquist F, Huelsenbeck JP. 2003. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19:1572-1574.
49. Singer R. 1986. The Agaricales in modern taxonomy. 4th ed. Koelz Scientific Books, Germany.
50. Swofford DL. 2002. PAUP* beta version. Phylogenetic analysis using parsimony (*and other methods). Sinauer Associated, USA.
51. Van der Ham RWJM. 1990. Nephelieae pollen (Sapindaceae): Form, function, and evolution. Leiden Botanical Series Vol. 13.
52. White TJ, Bruns T, Lee S, Taylor J. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenies. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ (eds), PCR protocols: a guide to methods and applications: 315-322. Academic Press, USA.