Review of papers describing neuroinformatics software

Neuroinformatics

Volumn 7, Issue 4, 2009, Pages 211-212

  De Schutter, Erik ^a   Ascoli, Giorgio A ^b   Kennedy, David N ^c  

^a UNIVERSITY OF ANTWERP   (Belgium)

^b GEORGE MASON UNIVERSITY   (United States)

^c UNIVERSITY OF MASSACHUSETTS MEDICAL SCHOOL   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BIOLOGY; COMPUTER PROGRAM; INFORMATION SCIENCE; NEUROSCIENCE; PEER REVIEW; PUBLICATION; PUBLISHING; REVIEW;

COMPUTATIONAL BIOLOGY; EDITORIAL POLICIES; INFORMATICS; NEUROSCIENCES; PEER REVIEW, RESEARCH; PERIODICALS AS TOPIC; SOFTWARE;

EID: 75149113948     PISSN: 15392791     EISSN: None     Source Type: Journal    
DOI: 10.1007/s12021-009-9058-x     Document Type: Review

References (19)

1. E Bagarinao K Matsuo T Nakai Y Tanaka 2008 BAX: a toolbox for the dynamic analysis of functional MRI datasets Neuroinformatics 6 109 115 10.1007/s12021-008-9017-y 18465269
2. G Bezgin AT Reid D Schubert R Kötter 2009 Matching spatial with ontological brain regions using Java tools for visualization, database access, and integrated data analysis Neuroinformatics 7 7 22 10.1007/s12021-008-9039-5 19145492
3. KM Brown DE Donohue G D'Alessandro GA Ascoli 2005 A cross-platform freeware tool for digital reconstruction of neuronal arborizations from image stacks Neuroinformatics 3 343 60 10.1385/NI:3:4:343 16284416 (Pubitemid 41640745)
4. RC Cannon ME Hasselmo RA Koene 2003 From biophysics to behavior: Catacomb2 and the design of biologically-plausible models for spatial navigation Neuroinformatics 1 3 42 10.1385/NI:1:1:003 15055391
5. BG Condron 2008 A freeware java tool for spatial point analysis of neuronal structures Neuroinformatics 6 57 61 10.1007/s12021-008-9008-z 18350260
6. EP Duff R Cunnington GF Egan 2007 REX: response exploration for neuroimaging datasets Neuroinformatics 5 223 234 10.1007/s12021-007-9001-y 17985253
7. D Gardner, et al. 2008 The neuroscience information framework: a data and knowledge environment for neuroscience Neuroinformatics 6 149 160 10.1007/s12021-008-9024-z 18946742
8. J Glascher 2009 Visualization of group inference data in functional neuroimaging Neuroinformatics 7 73 82 10.1007/s12021-008-9042-x 19140033
9. DH Goldberg JD Victor EP Gardner D Gardner 2009 Spike train analysis toolkit: enabling wider application of information-theoretic techniques to neurophysiology Neuroinformatics 7 165 178 10.1007/s12021-009-9049-y 19475519
10. C Gunay JR Edgerton S Li T Sangrey AA Prinz D Jaeger 2009 Database analysis of simulated and recorded electrophysiological datasets with PANDORA's toolbox Neuroinformatics 7 93 111 10.1007/s12021-009-9048-z 19475520
11. 2+ dynamics in a spine Neuroinformatics 3 49 64 10.1385/NI:3:1:049 15897616
12. DN Kennedy 2004 Barriers to the socialization of information Neuroinformatics 2 367 368 10.1385/NI:2:4:367 15800368
13. RA Koene B Tijms P van Hees F Postma A de Ridder GJ Ramakers J van Pelt A van Ooyen 2009 NETMORPH: a framework for the stochastic generation of large scale neuronal networks with realistic neuron morphologies Neuroinformatics 7 195 210 10.1007/s12021-009-9052-3 19672726
14. T Liu G Li J Nie A Tarokh X Zhou L Guo J Malicki W Xia ST Wong 2008 An automated method for cell detection in zebrafish Neuroinformatics 6 5 21 10.1007/s12021-007-9005-7 18288618
15. XZ Luo DN Kennedy Z Cohen 2009 Neuroimaging informatics tools and resources clearinghouse (NITRC) resource announcement Neuroinformatics 7 55 56 10.1007/s12021-008-9036-8 19184562
16. WL Nowinski I Volkau Y Marchenko A Thirunavuukarasuu TT Ng VM Runge 2009 A 3D model of human cerebrovasculature derived from 3T magnetic resonance angiography Neuroinformatics 7 23 36 10.1007/s12021-008-9028-8 19016001
17. R Srinivasan X Zhou E Miller J Lu J Lichtman ST Wong 2007 Automated axon tracking of 3D confocal laser scanning microscopy images using guided probabilistic region merging Neuroinformatics 5 189 203 10.1007/s12021-007-0013- 4 17917130 (Pubitemid 350135988)
18. M Versace H Ames J Leveille B Fortenberry A Gorchetchnikov 2008 KInNeSS: a modular framework for computational neuroscience Neuroinformatics 6 291 309 10.1007/s12021-008-9021-2 18695948
19. J Zhang L Liang JR Anderson L Gatewood DA Rottenberg SC Strother 2008 A Java-based fMRI processing pipeline evaluation system for assessment of univariate general linear model and multivariate canonical variate analysis-based pipelines Neuroinformatics 6 123 134 10.1007/s12021-008-9014-1 18506642