메뉴 건너뛰기




Volumn 49, Issue 3, 2010, Pages 560-569

The structure of the proline utilization a proline dehydrogenase domain inactivated by N-propargylglycine provides insight into conformational changes induced by substrate binding and flavin reduction

Author keywords

[No Author keywords available]

Indexed keywords

ACTIVE SITE; BINDING DOMAIN; CONFORMATIONAL CHANGE; CONSERVED RESIDUES; MEMBRANE AFFINITY; PROLINE DEHYDROGENASE; PROLINE UTILIZATION; RESOLUTION STRUCTURE; SUBSEQUENT REDUCTION; SUBSTRATE BINDING; TRANSCRIPTIONAL REPRESSORS;

EID: 74949118627     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi901717s     Document Type: Article
Times cited : (35)

References (31)
  • 1
    • 53849098986 scopus 로고    scopus 로고
    • Direct linking of metabolism and gene expression in the proline utilization A protein from Escherichia coli
    • Zhou, Y., Zhu, W., Bellur, P. S., Rewinkel, D., and Becker, D. F. (2008) Direct linking of metabolism and gene expression in the proline utilization A protein from Escherichia coli. Amino Acids 35, 711-718.
    • (2008) Amino Acids , vol.35 , pp. 711-718
    • Zhou, Y.1    Zhu, W.2    Bellur, P.S.3    Rewinkel, D.4    Becker, D.F.5
  • 2
    • 53849128901 scopus 로고    scopus 로고
    • Structural biology of proline catabolism
    • Tanner, J. J. (2008) Structural biology of proline catabolism. Amino Acids 35, 719-730.
    • (2008) Amino Acids , vol.35 , pp. 719-730
    • Tanner, J.J.1
  • 4
    • 0021104415 scopus 로고
    • Proline dehydrogenase from Escherichia coli K12. Properties of the membrane-associated enzyme
    • Abrahamson, J. L., Baker, L. G., Stephenson, J. T., and Wood, J. M. (1983) Proline dehydrogenase from Escherichia coli K12. Properties of the membrane-associated enzyme. Eur. J. Biochem. 134, 77-82.
    • (1983) Eur. J. Biochem , vol.134 , pp. 77-82
    • Abrahamson, J.L.1    Baker, L.G.2    Stephenson, J.T.3    Wood, J.M.4
  • 5
    • 0026690379 scopus 로고
    • Redesigned purification yields a fully functional PutA protein dimer from Escherichia coli
    • Brown, E. D., and Wood, J. M. (1992) Redesigned purification yields a fully functional PutA protein dimer from Escherichia coli. J. Biol. Chem. 267, 13086-13092.
    • (1992) J. Biol. Chem , vol.267 , pp. 13086-13092
    • Brown, E.D.1    Wood, J.M.2
  • 6
    • 0019805440 scopus 로고
    • Enzymatic properties of the purified putA protein from Salmonella typhimurium
    • Menzel, R., and Roth, J. (1981) Enzymatic properties of the purified putA protein from Salmonella typhimurium. J. Biol. Chem. 256, 9762-9766.
    • (1981) J. Biol. Chem , vol.256 , pp. 9762-9766
    • Menzel, R.1    Roth, J.2
  • 7
    • 33846185960 scopus 로고    scopus 로고
    • Redox-induced changes in flavin structure and roles of flavin N(5) and the ribityl 20-OH group in regulating PutA-membrane binding
    • Zhang, W., Zhang, M., Zhu, W., Zhou, Y., Wanduragala, S., Rewinkel, D., Tanner, J. J., and Becker, D. F. (2007) Redox-induced changes in flavin structure and roles of flavin N(5) and the ribityl 20-OH group in regulating PutA-membrane binding. Biochemistry 46, 483-491.
    • (2007) Biochemistry , vol.46 , pp. 483-491
    • Zhang, W.1    Zhang, M.2    Zhu, W.3    Zhou, Y.4    Wanduragala, S.5    Rewinkel, D.6    Tanner, J.J.7    Becker, D.F.8
  • 8
    • 5444257841 scopus 로고    scopus 로고
    • Regulation of PutA-membrane associations by flavin adenine dinucleotide reduction
    • Zhang, W., Zhou, Y., and Becker, D. F. (2004) Regulation of PutA-membrane associations by flavin adenine dinucleotide reduction. Biochemistry 43, 13165-13174.
    • (2004) Biochemistry , vol.43 , pp. 13165-13174
    • Zhang, W.1    Zhou, Y.2    Becker, D.F.3
  • 9
    • 0005034336 scopus 로고
    • Membrane association of proline dehydrogenase in Escherichia coli is redox dependent
    • Wood, J. M. (1987) Membrane association of proline dehydrogenase in Escherichia coli is redox dependent. Proc. Natl. Acad. Sci. U.S.A. 84, 373-377.
    • (1987) Proc. Natl. Acad. Sci. U.S.A , vol.84 , pp. 373-377
    • Wood, J.M.1
  • 10
    • 43949139276 scopus 로고    scopus 로고
    • Structural basis for the inactivation of Thermus thermophilus proline dehydrogenase by N-propargylglycine
    • White, T. A., Johnson, W. H., Jr., Whitman, C. P., and Tanner, J. J. (2008) Structural basis for the inactivation of Thermus thermophilus proline dehydrogenase by N-propargylglycine. Biochemistry 47, 5573-5580.
    • (2008) Biochemistry , vol.47 , pp. 5573-5580
    • White, T.A.1    Johnson Jr., W.H.2    Whitman, C.P.3    Tanner, J.J.4
  • 11
    • 24944562717 scopus 로고    scopus 로고
    • Exploring the proline-dependent conformational change in the multifunctional PutA flavoprotein by tryptophan fluorescence spectroscopy
    • Zhu, W., and Becker, D. F. (2005) Exploring the proline-dependent conformational change in the multifunctional PutA flavoprotein by tryptophan fluorescence spectroscopy. Biochemistry 44, 12297-12306.
    • (2005) Biochemistry , vol.44 , pp. 12297-12306
    • Zhu, W.1    Becker, D.F.2
  • 12
    • 61449176891 scopus 로고    scopus 로고
    • A conserved active site tyrosine residue of proline dehydrogenase helps enforce the preference for proline over hydroxyproline as the substrate
    • Ostrander, E. L., Larson, J. D., Schuermann, J. P., and Tanner, J. J. (2009) A conserved active site tyrosine residue of proline dehydrogenase helps enforce the preference for proline over hydroxyproline as the substrate. Biochemistry 48, 951-959.
    • (2009) Biochemistry , vol.48 , pp. 951-959
    • Ostrander, E.L.1    Larson, J.D.2    Schuermann, J.P.3    Tanner, J.J.4
  • 13
    • 33644874235 scopus 로고    scopus 로고
    • The integration of macromolecular diffraction data
    • Leslie, A. G. (2006) The integration of macromolecular diffraction data. Acta Crystallogr. D62, 48-57.
    • (2006) Acta Crystallogr , vol.D62 , pp. 48-57
    • Leslie, A.G.1
  • 14
    • 33644875355 scopus 로고    scopus 로고
    • Scaling and assessment of data quality
    • Evans, P. (2006) Scaling and assessment of data quality. Acta Crystallogr. D62, 72-82.
    • (2006) Acta Crystallogr , vol.D62 , pp. 72-82
    • Evans, P.1
  • 15
  • 16
    • 0014432781 scopus 로고
    • Solvent content of protein crystals
    • Matthews, B. W. (1968) Solvent content of protein crystals. J. Mol. Biol. 33, 491-497.
    • (1968) J. Mol. Biol , vol.33 , pp. 491-497
    • Matthews, B.W.1
  • 17
    • 0035211884 scopus 로고    scopus 로고
    • Crystallization and preliminary crystallographic analysis of the proline dehydrogenase domain of the multifunctional PutA flavo-protein from Escherichia coli
    • Nadaraia, S., Lee, Y. H., Becker, D. F., and Tanner, J. J. (2001) Crystallization and preliminary crystallographic analysis of the proline dehydrogenase domain of the multifunctional PutA flavo-protein from Escherichia coli. Acta Crystallogr. D57, 1925-1927.
    • (2001) Acta Crystallogr , vol.D57 , pp. 1925-1927
    • Nadaraia, S.1    Lee, Y.H.2    Becker, D.F.3    Tanner, J.J.4
  • 18
    • 0037312937 scopus 로고    scopus 로고
    • Structure of the proline dehydrogenase domain of the multifunctional PutA flavoprotein
    • Lee, Y. H., Nadaraia, S., Gu, D., Becker, D. F., and Tanner, J. J. (2003) Structure of the proline dehydrogenase domain of the multifunctional PutA flavoprotein. Nat. Struct. Biol. 10, 109-114.
    • (2003) Nat. Struct. Biol , vol.10 , pp. 109-114
    • Lee, Y.H.1    Nadaraia, S.2    Gu, D.3    Becker, D.F.4    Tanner, J.J.5
  • 19
    • 4744340116 scopus 로고    scopus 로고
    • Structures of the Escherichia coli PutA proline dehydrogenase domain in complex with competitive inhibitors
    • Zhang, M., White, T. A., Schuermann, J. P., Baban, B. A., Becker, D. F., and Tanner, J. J. (2004) Structures of the Escherichia coli PutA proline dehydrogenase domain in complex with competitive inhibitors. Biochemistry 43, 12539-12548.
    • (2004) Biochemistry , vol.43 , pp. 12539-12548
    • Zhang, M.1    White, T.A.2    Schuermann, J.P.3    Baban, B.A.4    Becker, D.F.5    Tanner, J.J.6
  • 20
    • 0034517589 scopus 로고    scopus 로고
    • An approach to multi-copy search in molecular replacement
    • Vagin, A., and Teplyakov, A. (2000) An approach to multi-copy search in molecular replacement. Acta Crystallogr. D56 (Part 12), 1622-1624.
    • (2000) Acta Crystallogr , vol.D56 , Issue.PART 12 , pp. 1622-1624
    • Vagin, A.1    Teplyakov, A.2
  • 22
    • 13244281317 scopus 로고    scopus 로고
    • Coot: Model-building tools for molecular graphics
    • Emsley, P., and Cowtan, K. (2004) Coot: Model-building tools for molecular graphics. Acta Crystallogr. D60, 2126-2132.
    • (2004) Acta Crystallogr , vol.D60 , pp. 2126-2132
    • Emsley, P.1    Cowtan, K.2
  • 23
    • 0032619605 scopus 로고    scopus 로고
    • UV-Visible Spectroscopy as a Tool to Study Flavoproteins
    • Chapman, S. K, and Reid, G. A, Eds, pp, Humana Press, Totowa, NJ
    • Macheroux, P. (1999) UV-Visible Spectroscopy as a Tool to Study Flavoproteins. In Flavoprotein Protocols (Chapman, S. K., and Reid, G. A., Eds.) pp 1-7, Humana Press, Totowa, NJ.
    • (1999) Flavoprotein Protocols , pp. 1-7
    • Macheroux, P.1
  • 24
    • 73649151319 scopus 로고
    • Esters of methanesulfonic acid as irreversible inhibitors of acetylcholinesterase
    • Kitz, R., and Wilson, I. B. (1962) Esters of methanesulfonic acid as irreversible inhibitors of acetylcholinesterase. J. Biol. Chem. 237, 3245-3249.
    • (1962) J. Biol. Chem , vol.237 , pp. 3245-3249
    • Kitz, R.1    Wilson, I.B.2
  • 25
    • 0028930481 scopus 로고
    • Mechanism-based enzyme inactivators
    • Silverman, R. B. (1995) Mechanism-based enzyme inactivators. Methods Enzymol. 249, 240-283.
    • (1995) Methods Enzymol , vol.249 , pp. 240-283
    • Silverman, R.B.1
  • 26
    • 0037881834 scopus 로고    scopus 로고
    • Flavin redox state triggers conformational changes in the PutA protein from Escherichia coli
    • Zhu, W., and Becker, D. F. (2003) Flavin redox state triggers conformational changes in the PutA protein from Escherichia coli. Biochemistry 42, 5469-5477.
    • (2003) Biochemistry , vol.42 , pp. 5469-5477
    • Zhu, W.1    Becker, D.F.2
  • 27
    • 0027419533 scopus 로고
    • Conformational change and membrane association of the PutA protein are coincident with reduction of its FAD cofactor by proline
    • Brown, E. D., and Wood, J. M. (1993) Conformational change and membrane association of the PutA protein are coincident with reduction of its FAD cofactor by proline. J. Biol. Chem. 268, 8972-8979.
    • (1993) J. Biol. Chem , vol.268 , pp. 8972-8979
    • Brown, E.D.1    Wood, J.M.2
  • 28
    • 34347237272 scopus 로고    scopus 로고
    • Structure and kinetics of monofunctional proline dehydrogenase from Thermus thermophilus
    • White, T. A., Krishnan, N., Becker, D. F., and Tanner, J. J. (2007) Structure and kinetics of monofunctional proline dehydrogenase from Thermus thermophilus. J. Biol. Chem. 282, 14316-14327.
    • (2007) J. Biol. Chem , vol.282 , pp. 14316-14327
    • White, T.A.1    Krishnan, N.2    Becker, D.F.3    Tanner, J.J.4
  • 29
    • 0027281989 scopus 로고
    • Mechanism-based inhibition of proline dehydrogenase by proline analogues
    • Tritsch, D., Mawlawi, H., and Biellmann, J. F. (1993) Mechanism-based inhibition of proline dehydrogenase by proline analogues. Biochim. Biophys. Acta 1202, 77-81.
    • (1993) Biochim. Biophys. Acta , vol.1202 , pp. 77-81
    • Tritsch, D.1    Mawlawi, H.2    Biellmann, J.F.3
  • 30
    • 79952608525 scopus 로고
    • Accurate bond and angle parameters for X-ray protein structure refinement
    • Engh, R. A., and Huber, R. (1991) Accurate bond and angle parameters for X-ray protein structure refinement. Acta Crystallogr. A47, 392-400.
    • (1991) Acta Crystallogr , vol.A47 , pp. 392-400
    • Engh, R.A.1    Huber, R.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.