메뉴 건너뛰기




Volumn 23, Issue 12, 2009, Pages 3169-3178

Parallel implementation of finite volume based method for isoelectric focusing

Author keywords

A message passing interface (MPI); Finite volume method (FVM); IEF; Proteins

Indexed keywords

COMPUTATIONAL EFFICIENCY; FINITE VOLUME METHOD; FOCUSING; MESSAGE PASSING; PROGRAM PROCESSORS; PROTEINS; MATHEMATICAL MODELS;

EID: 74749106612     PISSN: 1738494X     EISSN: None     Source Type: Journal    
DOI: 10.1007/s12206-009-1001-4     Document Type: Article
Times cited : (8)

References (19)
  • 1
    • 0032895474 scopus 로고    scopus 로고
    • KinMutBase, A database of human disease-causing protein kinase mutations
    • K. A. E. Stenberg, P. T. Riikonen and M. Vihinen, KinMutBase, A database of human disease-causing protein kinase mutations, Nucleic Acids Research 27(1) (1999) 362-364.
    • (1999) Nucleic Acids Research , vol.27 , Issue.1 , pp. 362-364
    • Stenberg, K.A.E.1    Riikonen, P.T.2    Vihinen, M.3
  • 3
    • 14744275720 scopus 로고    scopus 로고
    • Isoelectric focusing in a poly(dimethylsiloxane) microfluidic chip
    • H. Cui, K. Horiuchi, P. Dutta and C. F. Ivory, Isoelectric focusing in a poly(dimethylsiloxane) microfluidic chip., Anal. Chem. 77 (2005) 1303-1309.
    • (2005) Anal. Chem. , vol.77 , pp. 1303-1309
    • Cui, H.1    Horiuchi, K.2    Dutta, P.3    Ivory, C.F.4
  • 5
    • 33947120195 scopus 로고    scopus 로고
    • Modeling and simulation of IEF in 2-D microgeometries
    • J. Shim, P. Dutta and C. F. Ivory, Modeling and simulation of IEF in 2-D microgeometries, Electrophoresis 28(4) (2007) 572-586.
    • (2007) Electrophoresis , vol.28 , Issue.4 , pp. 572-586
    • Shim, J.1    Dutta, P.2    Ivory, C.F.3
  • 8
    • 27844574339 scopus 로고    scopus 로고
    • Performance prediction through simulation of a hybrid MPI/OpenMP application
    • R. Aversa, B. D. Martino, M. Rak, S. Venticinque and U. Villano, Performance prediction through simulation of a hybrid MPI/OpenMP application, Parallel Computing 31(10-12) (2005) 1013-1033.
    • (2005) Parallel Computing , vol.31 , Issue.10-12 , pp. 1013-1033
    • Aversa, R.1    Martino, B.D.2    Rak, M.3    Venticinque, S.4    Villano, U.5
  • 9
    • 33751385210 scopus 로고
    • Algorithms for the Computation of. Molecular distance matrix and distance polynomial of chemical graphs on parallel computers
    • P. Thangavel and P. Venuvanalingam, Algorithms for the Computation of. Molecular distance matrix and distance polynomial of chemical graphs on parallel computers, J. Chem. Inf. Comput. Sci. 33 (1993) 412-414.
    • (1993) J. Chem. Inf. Comput. Sci. , vol.33 , pp. 412-414
    • Thangavel, P.1    Venuvanalingam, P.2
  • 10
    • 0000483898 scopus 로고    scopus 로고
    • Parallel implementation of a Monte Carlo molecular stimulation program
    • A. P. Carvalho, J. A. N. F. Gomes and M. N. D. S. Cordeiro, Parallel implementation of a Monte Carlo molecular stimulation program, J. Chem. Inf. Comput. Sci., 40(3) (2000) 588-592.
    • (2000) J. Chem. Inf. Comput. Sci. , vol.40 , Issue.3 , pp. 588-592
    • Carvalho, A.P.1    Gomes, J.A.N.F.2    Cordeiro, M.N.D.S.3
  • 11
    • 29044447721 scopus 로고    scopus 로고
    • Symplectic molecular dynamics simulations on specially designed parallel computers
    • U. Borstnik and D. Janezic, Symplectic molecular dynamics simulations on specially designed parallel computers, J. Chem. Inf. Model. 45(8) (2005) 1600-1604.
    • (2005) J. Chem. Inf. Model. , vol.45 , Issue.8 , pp. 1600-1604
    • Borstnik, U.1    Janezic, D.2
  • 12
    • 26844556940 scopus 로고    scopus 로고
    • Parallel tandem: A program for parallel processing of tandem mass spectra using PVM or MPI and X! Tandem
    • D. T. Duncan, R. Craig and A. J. Link parallel tandem: a program for parallel processing of tandem mass spectra using PVM or MPI and X! Tandem, Journal of Proteome Research 4 (2005) 1842-1847.
    • (2005) Journal of Proteome Research , vol.4 , pp. 1842-1847
    • Duncan, D.T.1    Craig, R.2    Link, A.J.3
  • 13
    • 36048952997 scopus 로고    scopus 로고
    • Kernel energy method: The interaction energy of the collagen triple helix
    • L. Huang, L. Massa and J. Karle, Kernel energy method: The interaction energy of the collagen triple helix, J. Chem. Theory Comput. 3 (2007) 1337-1341.
    • (2007) J. Chem. Theory Comput. , vol.3 , pp. 1337-1341
    • Huang, L.1    Massa, L.2    Karle, J.3
  • 15
    • 33750139353 scopus 로고    scopus 로고
    • Discretization and parallel performance of an unstructured finite volume Navier-Stokes solver
    • S. A. M. Karimian and A. G. Straatman, Discretization and parallel performance of an unstructured finite volume Navier-Stokes solver, International Journal for Numerical Methods in Fluids, 52(6) (2006) 591-615.
    • (2006) International Journal for Numerical Methods in Fluids , vol.52 , Issue.6 , pp. 591-615
    • Karimian, S.A.M.1    Straatman, A.G.2
  • 16
    • 0028957376 scopus 로고
    • Computation of the electrophoretic mobility of proteins
    • K. S. Chae, A. M. Lenhoff, Computation of the electrophoretic mobility of proteins, Biophysical Journal 68 (1995) 1120-1127.
    • (1995) Biophysical Journal , vol.68 , pp. 1120-1127
    • Chae, K.S.1    Lenhoff, A.M.2
  • 18
    • 0022663552 scopus 로고
    • Theory of electrophoretic separations Part I: Formulation of a mathematical model
    • D. A. Saville and O. A. Palusinski, Theory of electrophoretic separations Part I: Formulation of a mathematical model, AIChE J. 32 (1986) 207-214.
    • (1986) AIChE J. , vol.32 , pp. 207-214
    • Saville, D.A.1    Palusinski, O.A.2
  • 19
    • 0022660347 scopus 로고
    • Theory of electrophoretic separations. II - Construction of a numerical simulation scheme and its applications
    • O. A. Palusinski, A. Graham, R. A. Mosher, M. Bier, D. A. Saville, Theory of electrophoretic separations. II - Construction of a numerical simulation scheme and its applications, AIChE J. 32 (1986) 215-223.
    • (1986) AIChE J. , vol.32 , pp. 215-223
    • Palusinski, O.A.1    Graham, A.2    Mosher, R.A.3    Bier, M.4    Saville, D.A.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.