-
1
-
-
33748322018
-
Analysis of the Salmonella typhimurium proteome through environmental response toward infectious conditions
-
Adkins JN, Mottaz HM, Norbeck AD, Gustin JK, Rue J, et al. (2006) Analysis of the Salmonella typhimurium proteome through environmental response toward infectious conditions. Mol Cell Proteomics 5: 1450-1461.
-
(2006)
Mol Cell Proteomics
, vol.5
, pp. 1450-1461
-
-
Adkins, J.N.1
Mottaz, H.M.2
Norbeck, A.D.3
Gustin, J.K.4
Rue, J.5
-
2
-
-
44249086202
-
Comparative bacterial proteomics: Analysis of the core genome concept
-
Callister SJ, McCue LA, Turse JE, Monroe ME, Auberry KJ, et al. (2008) Comparative bacterial proteomics: analysis of the core genome concept. PLoS One 3: e1542.
-
(2008)
Plos One
, vol.e1542
, pp. 3
-
-
Callister, S.J.1
McCue, L.A.2
Turse, J.E.3
Monroe, M.E.4
Auberry, K.J.5
-
3
-
-
33644876912
-
The PeptideAtlas project
-
Desiere F, Deutsch EW, King NL, Nesvizhskii AI, Mallick P, et al. (2006) The PeptideAtlas project. Nucleic Acids Res 34: D655-658.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Desiere, F.1
Deutsch, E.W.2
King, N.L.3
Nesvizhskii, A.I.4
Mallick, P.5
-
4
-
-
33750622611
-
Challenges and opportunities in proteomics data analysis
-
Domon B, Aebersold R (2006) Challenges and opportunities in proteomics data analysis. Mol Cell Proteomics 5: 1921-1926.
-
(2006)
Mol Cell Proteomics
, vol.5
, pp. 1921-1926
-
-
Domon, B.1
Aebersold, R.2
-
6
-
-
62149121444
-
Decon2LS: An open-source software package for automated processing and visualization of high resolution mass spectrometry data
-
Jaitly N, Mayampurath A, Littlefield K, Adkins JN, Anderson GA, et al. (2009) Decon2LS: An open-source software package for automated processing and visualization of high resolution mass spectrometry data. BMC Bioinformatics 10: 87.
-
(2009)
Bmc Bioinformatics
, vol.10
, pp. 87
-
-
Jaitly, N.1
Mayampurath, A.2
Littlefield, K.3
Adkins, J.N.4
Anderson, G.A.5
-
7
-
-
33645461851
-
PRISM: A data management system for high-throughput proteomics
-
Kiebel GR, Auberry KJ, Jaitly N, Clark DA, Monroe ME, et al. (2006) PRISM: a data management system for high-throughput proteomics. Proteomics 6: 1783-1790.
-
(2006)
Proteomics
, vol.6
, pp. 1783-1790
-
-
Kiebel, G.R.1
Auberry, K.J.2
Jaitly, N.3
Clark, D.A.4
Monroe, M.E.5
-
8
-
-
23944526367
-
PRIDE: The proteomics identifications database
-
Martens L, Hermjakob H, Jones P, Adamski M, Taylor C, et al. (2005) PRIDE: the proteomics identifications database. Proteomics 5: 3537-3545.
-
(2005)
Proteomics
, vol.5
, pp. 3537-3545
-
-
Martens, L.1
Hermjakob, H.2
Jones, P.3
Adamski, M.4
Taylor, C.5
-
9
-
-
38949210266
-
Human Proteinpedia enables sharing of human protein data
-
Mathivanan S, Ahmed M, Ahn NG, Alexandre H, Amanchy R et al (2008) Human Proteinpedia enables sharing of human protein data. Nat Biotechnol 26: 164-167.
-
(2008)
Nat Biotechnol
, vol.26
, pp. 164-167
-
-
Mathivanan, S.1
Ahmed, M.2
Ahn, N.G.3
Alexandre, H.4
Amanchy, R.5
et al6
-
10
-
-
43249087428
-
MASIC: A software program for fast quantitation and flexible visualization of chromatographic profiles from detected LC-MS(/MS) features
-
Monroe ME, Shaw JL, Daly DS, Adkins JN, Smith RD (2008) MASIC: a software program for fast quantitation and flexible visualization of chromatographic profiles from detected LC-MS(/MS) features. Comput Biol Chem 32: 215-217.
-
(2008)
Comput Biol Chem
, vol.32
, pp. 215-217
-
-
Monroe, M.E.1
Shaw, J.L.2
Daly, D.S.3
Adkins, J.N.4
Smith, R.D.5
-
11
-
-
34548136221
-
VIPER: An advanced software package to support high-throughput LC-MS peptide identification
-
Monroe ME, Tolic N, Jaitly N, Shaw JL, Adkins JN, et al. (2007) VIPER: an advanced software package to support high-throughput LC-MS peptide identification. Bioinformatics 23: 2021-2023.
-
(2007)
Bioinformatics
, vol.23
, pp. 2021-2023
-
-
Monroe, M.E.1
Tolic, N.2
Jaitly, N.3
Shaw, J.L.4
Adkins, J.N.5
-
12
-
-
41349120246
-
DeconMSn: A software tool for accurate parent ion monoisotopic mass determination for tandem mass spectra
-
Mayampurath AM, Jaitly N, Purvine SO, Monroe ME, Auberry KJ, et al. (2008) DeconMSn: a software tool for accurate parent ion monoisotopic mass determination for tandem mass spectra. Bioinformatics 24: 1021-1023.
-
(2008)
Bioinformatics
, vol.24
, pp. 1021-1023
-
-
Mayampurath, A.M.1
Jaitly, N.2
Purvine, S.O.3
Monroe, M.E.4
Auberry, K.J.5
-
13
-
-
46249116675
-
DAnTE: A statistical tool for quantitative analysis of -omics data
-
Polpitiya AD, Qian WJ, Jaitly N, Petyuk VA, Adkins JN, et al.(2008) DAnTE: a statistical tool for quantitative analysis of -omics data. Bioinformatics 24: 1556-1558.
-
(2008)
Bioinformatics
, vol.24
, pp. 1556-1558
-
-
Polpitiya, A.D.1
Qian, W.J.2
Jaitly, N.3
Petyuk, V.A.4
Adkins, J.N.5
et al6
-
14
-
-
33749424678
-
Proteomic analysis of Salmonella enterica serovar typhimurium isolated from RAW 264.7 macrophages: Identification of a novel protein that contributes to the replication of serovar typhimurium inside macrophages
-
Shi L, Adkins JN, Coleman JR, Schepmoes AA, Dohnkova A, et al. (2006) Proteomic analysis of Salmonella enterica serovar typhimurium isolated from RAW 264.7 macrophages: identification of a novel protein that contributes to the replication of serovar typhimurium inside macrophages. J Biol Chem 281: 29131-29140.
-
(2006)
J Biol Chem
, vol.281
, pp. 29131-29140
-
-
Shi, L.1
Adkins, J.N.2
Coleman, J.R.3
Schepmoes, A.A.4
Dohnkova, A.5
-
15
-
-
67650479361
-
NCBI Peptidome: A new public repository for mass spectrometry peptide identifications
-
Slotta DJ, Barrett T, Edgar R (2009) NCBI Peptidome: a new public repository for mass spectrometry peptide identifications. Nat Biotechnol 27: 600-601.
-
(2009)
Nat Biotechnol
, vol.27
, pp. 600-601
-
-
Slotta, D.J.1
Barrett, T.2
Edgar, R.3
-
16
-
-
0036253914
-
An accurate mass tag strategy for quantitative and high-throughput proteome measurements
-
Smith RD, Anderson GA, Lipton MS, Pasa-Tolic L, Shen Y, et al. (2002) An accurate mass tag strategy for quantitative and high-throughput proteome measurements. Proteomics 2:513-523.
-
(2002)
Proteomics
, vol.2
, pp. 513-523
-
-
Smith, R.D.1
Anderson, G.A.2
Lipton, M.S.3
Pasa-Tolic, L.4
Shen, Y.5
-
17
-
-
0035106351
-
Large-scale analysis of the yeast proteome by multidimensional protein identification technology
-
Washburn MP, Wolters D, Yates JR 3rd (2001) Large-scale analysis of the yeast proteome by multidimensional protein identification technology. Nat Biotechnol 19:242-247.
-
(2001)
Nat Biotechnol
, vol.19
, pp. 242-247
-
-
Washburn, M.P.1
Wolters, D.2
Yates III., J.R.3
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