-
1
-
-
0034634395
-
The evolutionary fate and consequences of duplicate genes
-
Lynch M, Conery JS (2000) The evolutionary fate and consequences of duplicate genes. Science 290: 1151-1155.
-
(2000)
Science
, vol.290
, pp. 1151-1155
-
-
Lynch, M.1
Conery, J.S.2
-
2
-
-
0033972072
-
The probability of duplicate gene preservation by subfunctionalization
-
Lynch M, Force A (2000) The probability of duplicate gene preservation by subfunctionalization. Genetics 154: 459-473.
-
(2000)
Genetics
, vol.154
, pp. 459-473
-
-
Lynch, M.1
Force, A.2
-
3
-
-
15544389841
-
Rapid subfunctionalization accompanied by prolonged and substantial neofunctionalization in duplicate gene evolution
-
He X, Zhang J (2005) Rapid subfunctionalization accompanied by prolonged and substantial neofunctionalization in duplicate gene evolution. Genetics 169: 1157-1164.
-
(2005)
Genetics
, vol.169
, pp. 1157-1164
-
-
He, X.1
Zhang, J.2
-
4
-
-
0028342845
-
The evolution of functionally novel proteins after gene duplication
-
Hughes AL (1994) The evolution of functionally novel proteins after gene duplication. Proc Biol Sci 256: 119-124.
-
(1994)
Proc Biol Sci
, vol.256
, pp. 119-124
-
-
Hughes, A.L.1
-
5
-
-
0032893932
-
Preservation of duplicate genes by complementary, degenerative mutations
-
Force A, Lynch M, Pickett FB, Amores A, Yan YL, et al. (1999) Preservation of duplicate genes by complementary, degenerative mutations. Genetics 151: 1531-1545.
-
(1999)
Genetics
, vol.151
, pp. 1531-1545
-
-
Force, A.1
Lynch, M.2
Pickett, F.B.3
Amores, A.4
Yan, Y.L.5
-
6
-
-
0346734130
-
Organismal complexity, protein complexity, and gene duplicability
-
Yang J, Lusk R, Li WH (2003) Organismal complexity, protein complexity, and gene duplicability. Proc Natl Acad Sci U S A 100: 15661-15665.
-
(2003)
Proc Natl Acad Sci U S A
, vol.100
, pp. 15661-15665
-
-
Yang, J.1
Lusk, R.2
Li, W.H.3
-
8
-
-
0038306149
-
Evolution by gene duplication revisited: Differentiation of regulatory elements versus proteins
-
Ohta T (2003) Evolution by gene duplication revisited: differentiation of regulatory elements versus proteins. Genetica 118: 209-216.
-
(2003)
Genetica
, vol.118
, pp. 209-216
-
-
Ohta, T.1
-
9
-
-
46149104377
-
Evo-devo and an expanding evolutionary synthesis: A genetic theory of morphological evolution
-
Carroll SB (2008) Evo-devo and an expanding evolutionary synthesis: a genetic theory of morphological evolution. Cell 134: 25-36.
-
(2008)
Cell
, vol.134
, pp. 25-36
-
-
Carroll, S.B.1
-
10
-
-
51249106485
-
The loci of evolution: How predictable is genetic evolution?
-
Stern DL, Orgogozo V (2008) The loci of evolution: how predictable is genetic evolution? Evolution 62: 2155-2177.
-
(2008)
Evolution
, vol.62
, pp. 2155-2177
-
-
Stern, D.L.1
Orgogozo, V.2
-
11
-
-
34247855863
-
The locus of evolution: Evo devo and the genetics of adaptation
-
Hoekstra HE, Coyne JA (2007) The locus of evolution: evo devo and the genetics of adaptation. Evolution 61: 995-1016.
-
(2007)
Evolution
, vol.61
, pp. 995-1016
-
-
Hoekstra, H.E.1
Coyne, J.A.2
-
12
-
-
0034819040
-
The ghost of selection past: Rates of evolution and functional divergence of anciently duplicated genes
-
Van de Peer Y, Taylor JS, Braasch I, Meyer A (2001) The ghost of selection past: rates of evolution and functional divergence of anciently duplicated genes. J Mol Evol 53: 436-446.
-
(2001)
J Mol Evol
, vol.53
, pp. 436-446
-
-
Van de Peer, Y.1
Taylor, J.S.2
Braasch, I.3
Meyer, A.4
-
14
-
-
1942452749
-
Proof and evolutionary analysis of ancient genome duplication in the yeast Saccharomyces cerevisiae
-
Kellis M, Birren BW, Lander ES (2004) Proof and evolutionary analysis of ancient genome duplication in the yeast Saccharomyces cerevisiae. Nature 428: 617-624.
-
(2004)
Nature
, vol.428
, pp. 617-624
-
-
Kellis, M.1
Birren, B.W.2
Lander, E.S.3
-
15
-
-
13444251367
-
Evolutionary significance of gene expression divergence
-
Jordan IK, Marino-Ramirez L, Koonin EV (2005) Evolutionary significance of gene expression divergence. Gene 345: 119-126.
-
(2005)
Gene
, vol.345
, pp. 119-126
-
-
Jordan, I.K.1
Marino-Ramirez, L.2
Koonin, E.V.3
-
16
-
-
8744268628
-
Duplicated genes evolve slower than singletons despite the initial rate increase
-
Jordan IK, Wolf YI, Koonin EV (2004) Duplicated genes evolve slower than singletons despite the initial rate increase. BMC Evol Biol 4: 22.
-
(2004)
BMC Evol Biol
, vol.4
, pp. 22
-
-
Jordan, I.K.1
Wolf, Y.I.2
Koonin, E.V.3
-
17
-
-
35348820582
-
Divergence in expression between duplicated genes in Arabidopsis
-
Ganko EW, Meyers BC, Vision TJ (2007) Divergence in expression between duplicated genes in Arabidopsis. Mol Biol Evol 24: 2298-2309.
-
(2007)
Mol Biol Evol
, vol.24
, pp. 2298-2309
-
-
Ganko, E.W.1
Meyers, B.C.2
Vision, T.J.3
-
18
-
-
30744464824
-
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis
-
Duarte JM, Cui L, Wall PK, Zhang Q, Zhang X, et al. (2006) Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol Biol Evol 23: 469-478.
-
(2006)
Mol Biol Evol
, vol.23
, pp. 469-478
-
-
Duarte, J.M.1
Cui, L.2
Wall, P.K.3
Zhang, Q.4
Zhang, X.5
-
19
-
-
0036890022
-
Rapid divergence in expression between duplicate genes inferred from microarray data
-
Gu Z, Nicolae D, Lu HH, Li WH (2002) Rapid divergence in expression between duplicate genes inferred from microarray data. Trends Genet 18: 609-613.
-
(2002)
Trends Genet
, vol.18
, pp. 609-613
-
-
Gu, Z.1
Nicolae, D.2
Lu, H.H.3
Li, W.H.4
-
20
-
-
26444488575
-
Expression divergence between duplicate genes
-
Li WH, Yang J, Gu X (2005) Expression divergence between duplicate genes. Trends Genet 21: 602-607.
-
(2005)
Trends Genet
, vol.21
, pp. 602-607
-
-
Li, W.H.1
Yang, J.2
Gu, X.3
-
21
-
-
38049038829
-
A burst of protein sequence evolution and a prolonged period of asymmetric evolution follow gene duplication in yeast
-
Scannell DR, Wolfe KH (2008) A burst of protein sequence evolution and a prolonged period of asymmetric evolution follow gene duplication in yeast. Genome Res 18: 137-147.
-
(2008)
Genome Res
, vol.18
, pp. 137-147
-
-
Scannell, D.R.1
Wolfe, K.H.2
-
22
-
-
6344239412
-
Divergence of spatial gene expression profiles following species-specific gene duplications in human and mouse
-
Huminiecki L, Wolfe KH (2004) Divergence of spatial gene expression profiles following species-specific gene duplications in human and mouse. Genome Res 14: 1870-1879.
-
(2004)
Genome Res
, vol.14
, pp. 1870-1879
-
-
Huminiecki, L.1
Wolfe, K.H.2
-
23
-
-
34548527460
-
Comparative analysis indicates regulatory neofunctionalization of yeast duplicates
-
Tirosh I, Barkai N (2007) Comparative analysis indicates regulatory neofunctionalization of yeast duplicates. Genome Biol 8: R50.
-
(2007)
Genome Biol
, vol.8
-
-
Tirosh, I.1
Barkai, N.2
-
24
-
-
3142732892
-
Functional divergence of duplicated genes formed by polyploidy during Arabidopsis evolution
-
Blanc G, Wolfe KH (2004) Functional divergence of duplicated genes formed by polyploidy during Arabidopsis evolution. Plant Cell 16: 1679-1691.
-
(2004)
Plant Cell
, vol.16
, pp. 1679-1691
-
-
Blanc, G.1
Wolfe, K.H.2
-
25
-
-
33746567801
-
A trial of phenome analysis using 4000 Ds-insertional mutants in gene-coding regions of Arabidopsis
-
Kuromori T, Wada T, Kamiya A, Yuguchi M, Yokouchi T, et al. (2006) A trial of phenome analysis using 4000 Ds-insertional mutants in gene-coding regions of Arabidopsis. Plant J 47: 640-651.
-
(2006)
Plant J
, vol.47
, pp. 640-651
-
-
Kuromori, T.1
Wada, T.2
Kamiya, A.3
Yuguchi, M.4
Yokouchi, T.5
-
26
-
-
74249119417
-
Evolutionary persistence of functional compensation by duplicate genes in Arabidopsis
-
Hanada K, Kuromori T, Myouga F, Toyoda T, Li WH, Shinozaki K (2009) Evolutionary persistence of functional compensation by duplicate genes in Arabidopsis. Genome Biol Evol 2009: 409-414.
-
(2009)
Genome Biol E
, vol.2009
, pp. 409-414
-
-
Hanada, K.1
Kuromori, T.2
Myouga, F.3
Toyoda, T.4
Li, W.H.5
Shinozaki, K.6
-
27
-
-
0037321897
-
A sequence-based map of Arabidopsis genes with mutant phenotypes
-
Meinke DW, Meinke LK, Showalter TC, Schissel AM, Mueller LA, et al. (2003) A sequence-based map of Arabidopsis genes with mutant phenotypes. Plant Physiol 131: 409-418.
-
(2003)
Plant Physiol
, vol.131
, pp. 409-418
-
-
Meinke, D.W.1
Meinke, L.K.2
Showalter, T.C.3
Schissel, A.M.4
Mueller, L.A.5
-
28
-
-
0032584099
-
Positive Darwinian selection after gene duplication in primate ribonuclease genes
-
Zhang J, Rosenberg HF, Nei M (1998) Positive Darwinian selection after gene duplication in primate ribonuclease genes. Proc Natl Acad Sci U S A 95: 3708-3713.
-
(1998)
Proc Natl Acad Sci U S A
, vol.95
, pp. 3708-3713
-
-
Zhang, J.1
Rosenberg, H.F.2
Nei, M.3
-
29
-
-
66649122827
-
Unraveling transcriptional control in Arabidopsis using cis-regulatory elements and coexpression networks
-
Vandepoele K, Quimbaya M, Casneuf T, De Veylder L, Van de Peer Y (2009) Unraveling transcriptional control in Arabidopsis using cis-regulatory elements and coexpression networks. Plant Physiol 150: 535-546.
-
(2009)
Plant Physiol
, vol.150
, pp. 535-546
-
-
Vandepoele, K.1
Quimbaya, M.2
Casneuf, T.3
De Veylder, L.4
Van de Peer, Y.5
-
30
-
-
42749087226
-
Highly integrated single-base resolution maps of the epigenome in Arabidopsis
-
Lister R, O'Malley RC, Tonti-Filippini J, Gregory BD, Berry CC, et al. (2008) Highly integrated single-base resolution maps of the epigenome in Arabidopsis. Cell 133: 523-536.
-
(2008)
Cell
, vol.133
, pp. 523-536
-
-
Lister, R.1
O'Malley, R.C.2
Tonti-Filippini, J.3
Gregory, B.D.4
Berry, C.C.5
-
31
-
-
35348919491
-
The nonsynonymous/synonymous substitution rate ratio versus the radical/conservative replacement rate ratio in the evolution of mammalian genes
-
Hanada K, Shiu SH, Li WH (2007) The nonsynonymous/synonymous substitution rate ratio versus the radical/conservative replacement rate ratio in the evolution of mammalian genes. Mol Biol Evol 24: 2235-2241.
-
(2007)
Mol Biol Evol
, vol.24
, pp. 2235-2241
-
-
Hanada, K.1
Shiu, S.H.2
Li, W.H.3
-
32
-
-
36849095602
-
High variability and non-neutral evolution of the mammalian avpr1a gene
-
Fink S, Excoffier L, Heckel G (2007) High variability and non-neutral evolution of the mammalian avpr1a gene. BMC Evol Biol 7: 176.
-
(2007)
BMC Evol Biol
, vol.7
, pp. 176
-
-
Fink, S.1
Excoffier, L.2
Heckel, G.3
-
33
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, et al. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25: 3389-3402.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
-
34
-
-
8844244033
-
Very low gene duplication rate in the yeast genome
-
Gao LZ, Innan H (2004) Very low gene duplication rate in the yeast genome. Science 306: 1367-1370.
-
(2004)
Science
, vol.306
, pp. 1367-1370
-
-
Gao, L.Z.1
Innan, H.2
-
35
-
-
0036613754
-
Clustering of housekeeping genes provides a unified model of gene order in the human genome
-
Lercher MJ, Urrutia AO, Hurst LD (2002) Clustering of housekeeping genes provides a unified model of gene order in the human genome. Nat Genet 31: 180-183.
-
(2002)
Nat Genet
, vol.31
, pp. 180-183
-
-
Lercher, M.J.1
Urrutia, A.O.2
Hurst, L.D.3
-
36
-
-
1842427830
-
The evolutionary dynamics of eukaryotic gene order
-
Hurst LD, Pal C, Lercher MJ (2004) The evolutionary dynamics of eukaryotic gene order. Nat Rev Genet 5: 299-310.
-
(2004)
Nat Rev Genet
, vol.5
, pp. 299-310
-
-
Hurst, L.D.1
Pal, C.2
Lercher, M.J.3
-
37
-
-
57749085421
-
Importance of lineage-specific expansion of plant tandem duplicates in the adaptive response to environmental stimuli
-
Hanada K, Zou C, Lehti-Shiu MD, Shinozaki K, Shiu SH (2008) Importance of lineage-specific expansion of plant tandem duplicates in the adaptive response to environmental stimuli. Plant Physiol 148: 993-1003.
-
(2008)
Plant Physiol
, vol.148
, pp. 993-1003
-
-
Hanada, K.1
Zou, C.2
Lehti-Shiu, M.D.3
Shinozaki, K.4
Shiu, S.H.5
-
38
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22: 4673-4680.
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
39
-
-
0033921902
-
Rates of conservative and radical nonsynonymous nucleotide substitutions in mammalian nuclear genes
-
Zhang J (2000) Rates of conservative and radical nonsynonymous nucleotide substitutions in mammalian nuclear genes. J Mol Evol 50: 56-68.
-
(2000)
J Mol Evol
, vol.50
, pp. 56-68
-
-
Zhang, J.1
|