메뉴 건너뛰기




Volumn , Issue , 2009, Pages 534-544

Learning your identity and disease from research papers: Information leaks in genome wide association study

Author keywords

Genome wide association study; Integer programming; Markov model; Single nucleotide polymorphism; Test statistics

Indexed keywords

GENOME WIDE ASSOCIATION STUDY; GENOME-WIDE ASSOCIATION; MARKOV MODEL; SINGLE NUCLEOTIDE POLYMORPHISM; SINGLE NUCLEOTIDE POLYMORPHISMS;

EID: 74049130896     PISSN: 15437221     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1145/1653662.1653726     Document Type: Conference Paper
Times cited : (206)

References (60)
  • 2
    • 74049090630 scopus 로고    scopus 로고
    • Haplotype estimation and association
    • Haplotype estimation and association. http://slack.ser.man.ac.uk/theory/ association-hap.html, 2005.
    • (2005)
  • 3
    • 74049151325 scopus 로고    scopus 로고
    • bintprog: solve binary integer programming problems. http://www. mathworks.com/access/helpdesk/help/toolbox/optim/index.html?/access/helpdesk/ help/toolbox/optim/ug/bintprog.html, 2008.
    • bintprog: solve binary integer programming problems. http://www. mathworks.com/access/helpdesk/help/toolbox/optim/index.html?/access/helpdesk/ help/toolbox/optim/ug/bintprog.html, 2008.
  • 6
    • 74049137649 scopus 로고    scopus 로고
    • rref: Reduced row echelon form. http://www.mathworks.com/access/helpdesk/ help/techdoc/index.html?/access/helpdesk/help/techdoc/ref/rref.html, 2008.
    • rref: Reduced row echelon form. http://www.mathworks.com/access/helpdesk/ help/techdoc/index.html?/access/helpdesk/help/techdoc/ref/rref.html, 2008.
  • 7
    • 74049104281 scopus 로고    scopus 로고
    • Genome-wide association studies
    • Genome-wide association studies. http://grants.nih.gov/grants/gwas/, 2009.
    • (2009)
  • 8
    • 74049097318 scopus 로고    scopus 로고
    • International hapmap project
    • International hapmap project. http://www.hapmap.org/, 2009.
    • (2009)
  • 9
    • 74049156590 scopus 로고    scopus 로고
    • Policy for sharing of data obtained in nih supported or conducted genome-wide association studies gwas
    • Policy for sharing of data obtained in nih supported or conducted genome-wide association studies (gwas). http://grants.nih.gov/grants/guide/ notice-files/NOT-OD-07-088.html#principles, 2009.
    • (2009)
  • 10
    • 74049087648 scopus 로고    scopus 로고
    • The r project for statistical computing. http://www.r-project.org/, 2009.
    • (2009)
  • 12
    • 0041783510 scopus 로고    scopus 로고
    • Privacy-preserving data mining
    • R. Agrawal and R. Srikant. Privacy-preserving data mining. SIGMOD Rec., 29(2):439-450, 2000.
    • (2000) SIGMOD Rec , vol.29 , Issue.2 , pp. 439-450
    • Agrawal, R.1    Srikant, R.2
  • 14
    • 42649091460 scopus 로고    scopus 로고
    • Genome-wide association scan of tag snps identifies a susceptibility locus for lung cancer at 15q25.1
    • 616-622
    • C. I. Amos et al. Genome-wide association scan of tag snps identifies a susceptibility locus for lung cancer at 15q25.1. 40(5):616-622, 2008.
    • (2008) , vol.40 , Issue.5
    • Amos, C.I.1
  • 15
    • 0000937686 scopus 로고
    • Tests for linear trends in proportions and frequencies
    • P. Armitage. Tests for linear trends in proportions and frequencies. Biometrics, 11(4):375-386, 1955.
    • (1955) Biometrics , vol.11 , Issue.4 , pp. 375-386
    • Armitage, P.1
  • 18
    • 0019056889 scopus 로고
    • A security machanism for statistical database
    • L. L. Beck. A security machanism for statistical database. ACM Trans. Database Syst., 5(3):316-3338, 1980.
    • (1980) ACM Trans. Database Syst , vol.5 , Issue.3 , pp. 316-3338
    • Beck, L.L.1
  • 22
    • 77958496068 scopus 로고    scopus 로고
    • Privacy-preserving matching of dna profiles
    • Technical Report Report 2008/203, ACR Cryptology ePrint Archive, 2008
    • F. Bruekers, S. Katzenbeisser, K. Kursawe, and P. Tuyls. Privacy-preserving matching of dna profiles. Technical Report Report 2008/203, ACR Cryptology ePrint Archive, 2008.
    • Bruekers, F.1    Katzenbeisser, S.2    Kursawe, K.3    Tuyls, P.4
  • 24
    • 0020205885 scopus 로고
    • Auditing and inference control in statistical databases
    • F. Y. Chin and G. Ozsoyoglu. Auditing and inference control in statistical databases. IEEE Trans. Softw. Eng., 8(6):574-582, 1982.
    • (1982) IEEE Trans. Softw. Eng , vol.8 , Issue.6 , pp. 574-582
    • Chin, F.Y.1    Ozsoyoglu, G.2
  • 25
    • 61349137526 scopus 로고    scopus 로고
    • T. DA et al. Genome-wide haplotype association study identifies the slc22a3-lpal2-lpa gene cluster as a risk locus for coronary artery disease. Nature Genetics, 41(3):283-285, February 2009.
    • T. DA et al. Genome-wide haplotype association study identifies the slc22a3-lpal2-lpa gene cluster as a risk locus for coronary artery disease. Nature Genetics, 41(3):283-285, February 2009.
  • 26
    • 0035694218 scopus 로고    scopus 로고
    • Bounds for cell entries in contingency tables induced by fixed marginal totals
    • A. Dobra and S. E. Fienberg. Bounds for cell entries in contingency tables induced by fixed marginal totals. Statistical Journal of the United Nations ECE, 18:363-371, 2001.
    • (2001) Statistical Journal of the United Nations ECE , vol.18 , pp. 363-371
    • Dobra, A.1    Fienberg, S.E.2
  • 29
    • 33845340501 scopus 로고    scopus 로고
    • A genome-wide association study identifies il23r as an inflammatory bowel disease gene
    • October
    • R. H. H. Duerr et al. A genome-wide association study identifies il23r as an inflammatory bowel disease gene. Science, October 2006.
    • (2006) Science
    • Duerr, R.H.H.1
  • 30
    • 33746335051 scopus 로고    scopus 로고
    • Differential privacy
    • Springer
    • C. Dwork. Differential privacy. In in ICALP, pages 1-12. Springer, 2006.
    • (2006) In in ICALP , pp. 1-12
    • Dwork, C.1
  • 33
    • 0002386913 scopus 로고
    • On the interpretation of chi-square from contingency tables, and the calculation of p
    • R. Fisher. On the interpretation of chi-square from contingency tables, and the calculation of p. Journal of the Royal Statistical Society, 85(1):87-94, 1922.
    • (1922) Journal of the Royal Statistical Society , vol.85 , Issue.1 , pp. 87-94
    • Fisher, R.1
  • 34
    • 33749633457 scopus 로고    scopus 로고
    • Models and methods for privacy-preserving data analysis and publishing
    • Washington, DC, USA, IEEE Computer Society
    • J. Gehrke. Models and methods for privacy-preserving data analysis and publishing. In ICDE '06: Proceedings of the 22nd International Conference on Data Engineering, page 105, Washington, DC, USA, 2006. IEEE Computer Society.
    • (2006) ICDE '06: Proceedings of the 22nd International Conference on Data Engineering , pp. 105
    • Gehrke, J.1
  • 35
    • 38449089111 scopus 로고    scopus 로고
    • The uneasy ethical and legal underpinnings of large-scale genomic biobanks
    • H. T. Greely. The uneasy ethical and legal underpinnings of large-scale genomic biobanks. Annu Rev Genomics Hum Genet, 8:343-364, 2007.
    • (2007) Annu Rev Genomics Hum Genet , vol.8 , pp. 343-364
    • Greely, H.T.1
  • 36
    • 33646191869 scopus 로고    scopus 로고
    • Modeling haplotype block variation using markov chains
    • Apr
    • G. Greenspan and D. Geiger. Modeling haplotype block variation using markov chains. Genetics, 172(4):2583-2599, Apr 2006.
    • (2006) Genetics , vol.172 , Issue.4 , pp. 2583-2599
    • Greenspan, G.1    Geiger, D.2
  • 39
    • 50849101381 scopus 로고    scopus 로고
    • N. Homer, S. Szelinger, M. Redman, D. Duggan, W. Tembe, J. Muehling, J. V. Pearson, D. A. Stephan, S. F. Nelson, and D. W. Craig. Resolving individuals contributing trace amounts of dna to highly complex mixtures using high-density snp genotyping microarrays. PLoS Genet, 4(8):e1000167+, 2008.
    • N. Homer, S. Szelinger, M. Redman, D. Duggan, W. Tembe, J. Muehling, J. V. Pearson, D. A. Stephan, S. F. Nelson, and D. W. Craig. Resolving individuals contributing trace amounts of dna to highly complex mixtures using high-density snp genotyping microarrays. PLoS Genet, 4(8):e1000167+, 2008.
  • 40
    • 34250001297 scopus 로고    scopus 로고
    • A genome-wide association study identifies alleles in fgfr2 associated with risk of sporadic postmenopausal breast cancer
    • May
    • D. J. Hunter et al. A genome-wide association study identifies alleles in fgfr2 associated with risk of sporadic postmenopausal breast cancer. Nature Genetics, 39(7):870-874, May 2007.
    • (2007) Nature Genetics , vol.39 , Issue.7 , pp. 870-874
    • Hunter, D.J.1
  • 41
    • 35348983887 scopus 로고    scopus 로고
    • A second generation human haplotype map of over 3.1 million snps
    • International HapMap Consortium, Oct
    • International HapMap Consortium, K. A. Frazer, et al. A second generation human haplotype map of over 3.1 million snps. Nature, 449(7164):851-861, Oct 2007.
    • (2007) Nature , vol.449 , Issue.7164 , pp. 851-861
    • Frazer, K.A.1
  • 43
    • 43249118858 scopus 로고    scopus 로고
    • Measuring and partitioning the high-order linkage disequilibrium by multiple order markov chains
    • May
    • Y. Kim, S. Feng, and Z. B. Zeng. Measuring and partitioning the high-order linkage disequilibrium by multiple order markov chains. Genet Epidemiol, 32(4):301-312, May 2008.
    • (2008) Genet Epidemiol , vol.32 , Issue.4 , pp. 301-312
    • Kim, Y.1    Feng, S.2    Zeng, Z.B.3
  • 45
    • 34748885498 scopus 로고    scopus 로고
    • Re-identification of familial database records
    • B. Malin. Re-identification of familial database records. In AMIA Annu Symp Proc. 2006, 2006.
    • (2006) AMIA Annu Symp Proc. 2006
    • Malin, B.1
  • 46
    • 0346274979 scopus 로고    scopus 로고
    • New methods for finding disease-susceptibility genes: Impact and potential
    • M. McCarthy, D. Smedley, and W. Hide. New methods for finding disease-susceptibility genes: impact and potential. Genome Biology, 4(10):119, 2003.
    • (2003) Genome Biology , vol.4 , Issue.10 , pp. 119
    • McCarthy, M.1    Smedley, D.2    Hide, W.3
  • 47
    • 2342642816 scopus 로고    scopus 로고
    • Little loss of information due to unknown phase for fine-scale linkage-disequilibrium mapping with single-nucleotide-polymorphism genotype data
    • May
    • A. P. Morris, J. C. Whittaker, and D. J. Balding. Little loss of information due to unknown phase for fine-scale linkage-disequilibrium mapping with single-nucleotide-polymorphism genotype data. Am J Hum Genet, 74(5):945-953, May 2004.
    • (2004) Am J Hum Genet , vol.74 , Issue.5 , pp. 945-953
    • Morris, A.P.1    Whittaker, J.C.2    Balding, D.J.3
  • 49
    • 34249888775 scopus 로고    scopus 로고
    • D. G. I. of Broad Institute of Harvard, L. U. MIT, N. I. of BioMedical Research, et al. Genome-Wide Association Analysis Identifies Loci for Type 2 Diabetes and Triglyceride Levels. Science, 316(5829):1331-1336, 2007.
    • D. G. I. of Broad Institute of Harvard, L. U. MIT, N. I. of BioMedical Research, et al. Genome-Wide Association Analysis Identifies Loci for Type 2 Diabetes and Triglyceride Levels. Science, 316(5829):1331-1336, 2007.
  • 51
    • 0001395261 scopus 로고
    • Some applications of mathematics to breeding problems iii
    • R. Robbins. Some applications of mathematics to breeding problems iii. Genetics, 3(4):375-389, 1918.
    • (1918) Genetics , vol.3 , Issue.4 , pp. 375-389
    • Robbins, R.1
  • 53
    • 34249885875 scopus 로고    scopus 로고
    • A genome-wide association study of type 2 diabetes in finns detects multiple susceptibility variants
    • April
    • L. Scott et al. A genome-wide association study of type 2 diabetes in finns detects multiple susceptibility variants. Science, April 2007.
    • (2007) Science
    • Scott, L.1
  • 54
    • 33847176604 scopus 로고    scopus 로고
    • A genome-wide association study identifies novel risk loci for type 2 diabetes
    • February
    • R. Sladek et al. A genome-wide association study identifies novel risk loci for type 2 diabetes. Nature, February 2007.
    • (2007) Nature
    • Sladek, R.1
  • 57
    • 34247548755 scopus 로고    scopus 로고
    • Genome-wide association study of prostate cancer identifies a second risk locus at 8q24
    • April
    • M. Yeager et al. Genome-wide association study of prostate cancer identifies a second risk locus at 8q24. Nature Genetics, 39(5):645-649, April 2007.
    • (2007) Nature Genetics , vol.39 , Issue.5 , pp. 645-649
    • Yeager, M.1
  • 58
    • 33744792325 scopus 로고    scopus 로고
    • Sequential importance sampling for multiway tables
    • I. H. D. Yuguo Chen and S. Sullivant. Sequential importance sampling for multiway tables. The Annals of Statistics, 34(1):523-545, 2006.
    • (2006) The Annals of Statistics , vol.34 , Issue.1 , pp. 523-545
    • Yuguo Chen, I.H.D.1    Sullivant, S.2
  • 59
    • 34249895023 scopus 로고    scopus 로고
    • Replication of Genome-Wide Association Signals in UK Samples Reveals Risk Loci for Type 2 Diabetes
    • E. Zeggini et al. Replication of Genome-Wide Association Signals in UK Samples Reveals Risk Loci for Type 2 Diabetes. Science, 316(5829):1336-1341, 2007.
    • (2007) Science , vol.316 , Issue.5829 , pp. 1336-1341
    • Zeggini, E.1
  • 60
    • 53349117782 scopus 로고    scopus 로고
    • Protecting aggregate genomic data
    • October
    • E. A. Zerhouni and E. G. Nabel. Protecting aggregate genomic data. Science, 322(5898):44a+, October 2008.
    • (2008) Science , vol.322 , Issue.5898
    • Zerhouni, E.A.1    Nabel, E.G.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.