Stretching DNA fibers out of a chromosome in solution using electro-osmotic flow

Journal of the Chinese Society of Mechanical Engineers, Transactions of the Chinese Institute of Engineers, Series C/Chung-Kuo Chi Hsueh Kung Ch'eng Hsuebo Pao

Volumn 30, Issue 4, 2010, Pages 289-295

  Hung, Min Sheng ^a   Osamu, Kurosawa ^b   Kabata, Hiroyuki ^c   Washizu, Masao ^d  

^a NATIONAL CHIAYI UNIVERSITY   (Taiwan)

^b ASTEM RI   (Japan)

^c SYSMEX CORPORATION   (Japan)

^d UNIVERSITY OF TOKYO   (Japan)

Author keywords

Chromosome; DNA; Electro osmosis; Laser induced heating

Indexed keywords

BIONANOTECHNOLOGY; DNA FIBER; ELECTROOSMOTIC FLOW; ENZYMATIC REACTION; GLASS SURFACES; LASER INDUCED; LASER-INDUCED HEATING; LOCAL HEATING;

DNA; ELECTROLYSIS; ELECTROOSMOSIS; FIBERS; HEATING; NANOFLUIDICS;

GENES;

EID: 74049128972     PISSN: 02579731     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (16)

1. Alberts, B., Johnson, A., Lewis, J., Raff, M., Roberts, K., and Walter, P., Molecular Biology of the Cell, 4th ed, Garland Science, New York, pp. 500, 208-231 (2002).
2. Bennink, M. L., Leuba, S. H, Leno, G H, Zlatanova, J., Grooth, B. G De, and Greve, J., "Unfolding individual nucleosomes by stretching single chromatin fibers with optical tweezers," Nature Structural Biology, Vol. 8, pp. 606-610 (2001).
3. Bustamante, C, Smith, S. B., Liphardt, J., and Smith, D, "Single-molecule studies of DNA mechanics," Current Opinion in Structural Biology, Vol. 10, pp. 279-285, (2000).
4. Chou, X.-R, Wang, J.-X., and Chen, J.-S., "Laser direct writing of diamond micro-nozzle using Q-switched Nd:YAG laser," Journal of the Chinese Society of Mechanical Engineers, Vol. 29, pp. 289-297, (2008).
5. Harwood, V J., Denson, J. D., Robinson-Bidle K. A., and Schreier, H. J., "Overexpression and characterization of a prolyl endopeptidase from the hyperthermophilic archaeon pyrococcus furiosus," Journal of Bacteriology, Vol. 179, pp. 3613-3618 (1997).
6. Heng, H. H.Q., Squire, J., and Tsui, L.-C., "High-resolution mapping of mammalian genes by in situ hybridization to free chromatin," Proceeding of the National Academy of Sciences, Vol. 89, pp. 9509-9513 (1992).
7. Hirano, K., Baba, Y., Matsuzawa, Y., and Mizuno, A., "Manipulation of single coiled DNA molecules by laser clustering of microparticles," Applied Physics Letters, Vol. 80, pp. 515-517 (2002).
8. Hung, M.-S., Kurosawa, O., Kabata, H., and Washizu, M., "An integrated laser-induced heating/electroosmosis system for the molecular surgery of chromosomes", Proc. of CSME the 21th National Conference on Mechanical Engineering, Kaohsiung, Taiwan, (2004).
9. Hunter, R. J., Zeta Potential in Colloid Science: Principles and Applications, Academic Press, New York (1981).
10. Maier, B., Bensimon, D., and Croquette, V., "Replication by a single DNA polymerase of a stretched single-stranded DNA," Proceeding of the National Academy of Sciences, Vol. 97, pp. 12002-12007 (2000).
11. Murayama, Y., and Sano, M., "Force measurements of a single DNA molecule," Journal of the Physical Society of Japan, Vol. 70, pp. 345-348 (2001).
12. Lai, H.-Y. and Huang, P.-H., "Molecular dynamics analyses of the femtosecond laser-induced grain boundary spallation," Journal of the Chinese Society of Mechanical Engineers, Vol. 28, pp. 577-583, (2007).
13. Langer-Safer, P. R., Levine, M., and Ward, D. C., "Immunological method for mapping genes on drosophila polytene chromosomes," Proceeding of the National Academy of Sciences, Vol. 79, pp. 4381-4385 (1982).
14. Washizu M. and Kurosawa, O., "Electrostatic manipulation of DNA in microfabricated structures," IEEE Transactions on Industry Applications, Vol. 26, pp. 1165-1172 (1990).
15. Washizu, M., Nikaido, Y., Kurosawa, O., and Kabata, H., "Stretching yeast chromosomes using electroosmotic flow," Journal of Electrostatics, Vol. 57, pp. 395-405 (2003).
16. Wuite, G. J. L., Davenport, R. H., Rappaport, A., and Bustamante, C., "An integrated laser trap/flow control video microscope for the study of single biomolecules," Biophysical Journal, Vol. 79, pp. 1155-1167 (2000).