Localization of candidate genes in a region of high frequency of microvariant alleles for prostate cancer susceptibility: The chromosome region yp11.2 genetic variation

DNA and Cell Biology

Volumn 29, Issue 1, 2010, Pages 3-7

  Carvalho, Raquel ^a,b   Pinheiro, Maria Fátima ^b,c,d   Medeiros, Rui ^a,b,c,d  

^a PORTUGUESE ONCOLOGY INSTITUTE   (Portugal)

^b INSTITUTO NACIONAL DE MEDICINA LEGAL E CIÊNCIAS FORENSES   (Portugal)

^c UNIVERSIDADE FERNANDO PESSOA   (Portugal)

^d UNIVERSITY OF PORTO   (Portugal)

Author keywords

[No Author keywords available]

Indexed keywords

DNA;

ARTICLE; CANCER RESISTANCE; CANCER RISK; CANCER SUSCEPTIBILITY; CARCINOGENESIS; CHROMOSOME LOSS; CHROMOSOME NOR; CHROMOSOME YP; CONFIDENCE INTERVAL; CONTROLLED STUDY; GENE FREQUENCY; GENE LOCATION; GENE LOCUS; GENETIC VARIABILITY; GENOME; HETEROZYGOTE; HUMAN; MAJOR CLINICAL STUDY; MALE; PRIORITY JOURNAL; PROSTATE CANCER; SHORT TANDEM REPEAT; STATISTICAL SIGNIFICANCE; TSPY GENE; TUMOR GENE; Y CHROMOSOME;

ALLELES; CHROMOSOMES, HUMAN, Y; GENETIC PREDISPOSITION TO DISEASE; GENETIC VARIATION; HUMANS; MALE; PROSTATIC NEOPLASMS;

EID: 74049123438     PISSN: 10445498     EISSN: None     Source Type: Journal    
DOI: 10.1089/dna.2009.0905     Document Type: Article

References (37)

1. Alers, J.C., Rochat, J., Krijtenburg, P.J., Hop, W.C.J., Kranse, R., Rosenberg, C., Tanke, H.J., Schoeder, F.H., and Dekken, H. (2000). Identification of genetic markers for prostatic cancer progression. Lab Investig 80, 931-942.
2. Alves, C., Gomes, V., Prata, M.J., Amorim, A., and Gusmao, L. (2007). Population data for Y-chromosome haplotypes defined by 17 STRs (AmpFlSTR®Y-Filer™) in Portugal. Forensic Sci Int 171, 250-255.
3. Bento, A.M., Lopes, V., Serra, A., Afonso Costa, H., Andrade, L., Balsa, F., Anjos, M.J., Carvalho, M., Oliveira, C., Batista, L., Gamero, J.J., Vieira, D.N., and Corte-real, F. (2008). Population data for Y-chromosome haplotypes defined by 17 STRs (AmpFlSTR®Y-Filer™) in Central Portugal. Forensic Sci Int Genet Suppl Ser 1, 179-180.
4. Butler, J.M. (2005). Forensic DNA Typing, 2nd edition (Elsevier Academic Press, London).
5. Chan, M.J., Stampfer, M.J., and Giovannucci, E.L. (1998). What causes prostate cancer? A brief summary of the epidemiology. Semin Cancer Biol 8, 263-273.
6. Dasari, V.K., Goharderakhshan, R.Z., Perinchery, G., Li, L.C., Tanaka, Y., Alonzo, J., and Dahika, R. (2001). Expression analysis of Y chromosome genes in human prostate cancer. J Urol 165, 1335-1341.
7. Ekman, P. (1993). Genetic and environmental factors in prostate cancer genesis: identifying high-risk cohorts. Eur Urol 35, 362-369.
8. Erbersdobler, A., Bardenhagen, P., and Henke, R.P. (1999). Numerical Chromosomal anomalies in latent adenocarcinomas of the prostate. Prostate 38, 92-99.
9. Ewis, A.A., Lee, J., Naroda, T., Sasahara, K., Sano, T., Kagawa, S., Iwamoto, T., and Nakahori, Y. (2002). Linkage between prostate cancer incidence of the human Y-linked tetranucleotide polymorphism DYS19. J Med Investig 49, 56-60.
10. Ferri, G., Robino, C., Alù , M., Luiselli, D., Tofanelli, S., Caciagli, L., Onofri, V., Pelotti, S., Di Gaetano, C., Crobu, F., Bedushi, G., and Capelli, C. (2008). Molecular characterisation and population genetics of the DYS458 .2 allelic variant. Forensic Sci Int: Genet Suppl Ser 1, 203-205.
11. Fradet, Y., Meyer, F., Bairati, I., Shadmani, R., and Moore, L. (1999). Dietary fat and prostate cancer progression and survival. Eur Urol 35, 388-391.
12. Giovannucci, E., Rimm, E.B., Coditz, G.A., Stampfer, M.J., Ascherio, A., Chute, C.C., and Willett, W.C. (1993). A prospective study of dietary fat and risk of prostate cancer. J Natl Cancer Inst 85, 1571-1579. (Pubitemid 23304685)
13. Hanson, E.K., and Ballantyne, J. (2006). Comprehensive annotated STR physical map of the human Y chromosome: forensic implications. Leg Med 8, 110-120.
14. Hsing, A.W., and Devesa, S.S. (2001). Trends and patterns of prostate cancer: what do they suggest? Epidemiol Rev 23, 3-13.
15. Jordan, J.J., Hanlon, A.L., Al-Saleem, T.I., Greenberg, R.E., and Tricoli, J.V. (2001). Loss of the short arm of Y chromosome in human prostate carcinoma. Cancer Genet Cytogenet 124, 122-126.
16. Kimpton, C., Gill, P., D'Aloja, E., Andersen, J.F., Bar, W., Holgersson, S., Jacobsen, S., Johnson, V., Kloosterman, A.D., Lareu, M.V., Nellemann, L., Pfitzinger, K., Phillips, C.P., Rand, S., Schmitter, H., Schneider, H., Sternersen, M., and Vide, M.C. (1995). Report on the second EDNAP collaborative STR exercise. Forensic Sci Int 71, 137-152.
17. Konig, J.J., Teubel, W., Romijn, J.C., Schroeder, F.H., and Hagemeijer, A. (1996). Gain and Loss of Chromosomes 1, 7, 8, 10, 18 and Y in 46 Prostate Cancers. Hum Pathol 27, 720-727.
18. Lau, Y.C., and Zhang, J. (2000). Expression analysis of thirty one Y chromosome genes in human prostate cancer. Mol Carcinog 27, 308-321.
19. Levi, F., La Vecchia, L., and Boyle, P. (2000). The rise and fall of prostate cancer. Eur J Cancer Prev 9, 381-385.
20. Lewin, B. Cell cycle and growth regulation. In: Genes VII. New York: Oxford University Press, 2000, pp. 835-840.
21. Medeiros, R., Morais, A., Vasconcelos, A., Costa, S., Pinto, D., Oliveira, J., and Lopes, C. (2002). The role of vitamin D receptor gene polymorphisms in the susceptibility to prostate cancer of a southern European population. J Hum Genet 47, 413-418.
22. Medeiros, R., Vasconcelos, A., Costa, S., Pinto, D., Ferreira, P., Lobo, F., Morais, A., Oliveira, J., and Lopes, C. (2004). Metabolic susceptibility genes and prostate cancer risk in a southern European population: the role of glutathione S-transferases GSTM1, GSTM3, and GSTT1 genetic polymorphisms. Prostate 58, 414-420.
23. Medeiros, R., Vasconcelos, A., Costa, S., Pinto, D., Morais, A., Oliveira, J., and Lopes, C. (2003). Steroid hormone genotypes ARStuI and ER325 are linked to the progression of human prostate cancer. Cancer Genet Cytogenet 141, 91-96.
24. Mullenbach, R., Lagoda, P.J., and Welter, C. (1989). An efficient salt-chloroform extraction of DNA from blood and tissues. Trends Genet 5, 391.
25. Oram, S.W., Liu, X.X., Lee, T.L., Chan, W.Y., and Lau, Y.F.C. (2006). TSPY potentiates cell proliferation and tumorigenesis by promoting cell cycle progression in HeLa and NIH3T3 cells. BMC Cancer 6, 154-168.
26. Paracchini, S., Pearce, C.L., Kolonel, L.N., Altshuler, D., Henderson, B.E., and Tyler-Smith, C. (2003). A Y chromosomal influence on prostate cancer risk: the multi-ethnic cohort study. J Med Genet 40, 815-819.
27. Parkin, M. (1998). The global burden of cancer. Semin Cancer Biol 8, 60-67.
28. Perinchery, G., Sasaki, M., Angan, A., Kumar, V., Carroll, P., and Dahiya, R. (2000). Deletion of Y-chromosome specific genes in human prostate cancer. J Urol 163, 1339-1342.
29. Pontes, M.L., Cainé, L., Abrantes, D., Lima, G., and Pinheiro, M.F. (2007). Allele frequencies and population data for 17 YSTR loci (AmpFlSTR®Y-Filer™) in a Northern Portuguese population sample. Forensic Sci Int 170, 62-67.
30. Porkka, K.P., and Visakorpi, T. (2004). Molecular mechanisms of prostate cancer. Eur Urol 45, 683-691.
31. Riley, D.E., and Krieger, J.N. (2005). Short tandem repeat (STR) replacements in UTRs and introns suggest an important role for certain STRs in gene expression and disease. Gene 344, 203-211.
32. Rubin, M.A., and De Marzo, A.M. (2004). Molecular genetics of human prostate cancer. Mod Pathol 17, 380-388.
33. Schaid, D.J. (2004). The complex genetic epidemiology of prostate cancer. Hum Mol Genet 13, R103-R121.
34. Schulz, W.A., Burchardt, M., and Cronauer, M.V. (2003). Molecular biology of prostate cancer. Mol Hum Reprod 9, 437-448.
35. Simard, J., Dumont, M., Labuda, D., Sinnett, D., Meloche, C., El-Alfy, M., Berger, L., Lees, E., Labrie, F., and Tavtigian, S.V. (2003). Prostate cancer susceptibility genes: lessons learned and challenges posed. Endocr-Relat Cancer 10, 225-259.
36. Suzuki, A., Maruno, A., Tahira, T., and Hayashi, K. (2001). Polar alteration of short tandem repeats (STRs) in mammalian cells. Mutat Res 474, 159-168.
37. Vijayakumar, S., Hall, D.C., Reveles, X.T., Troyer, D.A., Thompson, I.M., Garcia, D., Xiang, R.H., Leach, R.J., Johnson-Pais, T.L., and Naylor, S.L. (2006). Detection of recurrent copy number loss at Yp11.2 involving TSPY gene cluster in prostate cancer using array-based comparative genomic hybridization. Cancer Res 66, 4055-4064.