메뉴 건너뛰기




Volumn 98, Issue 1, 2010, Pages 1-11

Stochastic bistability and bifurcation in a mesoscopic signaling system with autocatalytic kinase

Author keywords

[No Author keywords available]

Indexed keywords

PHOSPHOTRANSFERASE;

EID: 74049092279     PISSN: 00063495     EISSN: 15420086     Source Type: Journal    
DOI: 10.1016/j.bpj.2009.09.055     Document Type: Article
Times cited : (76)

References (38)
  • 1
    • 43449106475 scopus 로고    scopus 로고
    • Cell biology: The cellular hullabaloo
    • Pearson, H. 2008. Cell biology: the cellular hullabaloo. Nature. 453:150-153.
    • (2008) Nature , vol.453 , pp. 150-153
    • Pearson, H.1
  • 2
    • 34047118521 scopus 로고    scopus 로고
    • Tunability and noise dependence in differentiation dynamics
    • Süel, G. M., R. P. Kulkarni, ..., M. B. Elowitz. 2007. Tunability and noise dependence in differentiation dynamics. Science. 315:1716-1719.
    • (2007) Science , vol.315 , pp. 1716-1719
    • Süel, G.M.1    Kulkarni, R.P.2    Elowitz, M.B.3
  • 3
    • 19544379881 scopus 로고    scopus 로고
    • Stochasticity in gene expression: From theories to phenotypes
    • Kaern, M., T. C. Elston, ..., J. J. Collins. 2005. Stochasticity in gene expression: from theories to phenotypes. Nat. Rev. Genet. 6:451-464.
    • (2005) Nat. Rev. Genet , vol.6 , pp. 451-464
    • Kaern, M.1    Elston, T.C.2    Collins, J.J.3
  • 4
    • 20344389483 scopus 로고    scopus 로고
    • Models of stochastic gene expression
    • Paulsson, J. 2005. Models of stochastic gene expression. Phys. Life Rev. 2:157-175.
    • (2005) Phys. Life Rev , vol.2 , pp. 157-175
    • Paulsson, J.1
  • 5
    • 2942718723 scopus 로고    scopus 로고
    • Control of stochasticity in eukaryotic gene expression
    • Raser, J. M., and E. K. O'Shea. 2004. Control of stochasticity in eukaryotic gene expression. Science. 304:1811-1814.
    • (2004) Science , vol.304 , pp. 1811-1814
    • Raser, J.M.1    O'Shea, E.K.2
  • 6
    • 0037119587 scopus 로고    scopus 로고
    • Stochastic gene expression in a single cell
    • Elowitz, M. B., A. J. Levine, ..., P. S. Swain. 2002. Stochastic gene expression in a single cell. Science. 297:1183-1186.
    • (2002) Science , vol.297 , pp. 1183-1186
    • Elowitz, M.B.1    Levine, A.J.2    Swain, P.S.3
  • 8
    • 0035193294 scopus 로고    scopus 로고
    • Stochasticity in transcriptional regulation: Origins, consequences, and mathematical representations
    • Kepler, T. B., and T. C. Elston. 2001. Stochasticity in transcriptional regulation: origins, consequences, and mathematical representations. Biophys. J. 81:3116-3136.
    • (2001) Biophys. J , vol.81 , pp. 3116-3136
    • Kepler, T.B.1    Elston, T.C.2
  • 10
    • 14044265753 scopus 로고    scopus 로고
    • Stochastic amplification and signaling in enzymatic futile cycles through noise-induced bistability with oscillations
    • Samoilov, M., S. Plyasunov, and A. P. Arkin. 2005. Stochastic amplification and signaling in enzymatic futile cycles through noise-induced bistability with oscillations. Proc. Natl. Acad. Sci. USA. 102:2310-2315.
    • (2005) Proc. Natl. Acad. Sci. USA , vol.102 , pp. 2310-2315
    • Samoilov, M.1    Plyasunov, S.2    Arkin, A.P.3
  • 11
    • 74049102976 scopus 로고    scopus 로고
    • Internal noise coherent resonance for mesoscopic chemical oscillations: A fundamental study
    • Hou, Z., T. J. Xiao, and H. Xin. 2006. Internal noise coherent resonance for mesoscopic chemical oscillations: a fundamental study. ChemPhysChem. 109:8515-8519.
    • (2006) ChemPhysChem , vol.109 , pp. 8515-8519
    • Hou, Z.1    Xiao, T.J.2    Xin, H.3
  • 12
    • 37649018636 scopus 로고    scopus 로고
    • Purely stochastic binary decisions in cell signaling models without underlying deterministic bistabilities
    • Artyomov, M. N., J. Das, ..., A. K. Chakraborty. 2007. Purely stochastic binary decisions in cell signaling models without underlying deterministic bistabilities. Proc. Natl. Acad. Sci. USA. 104:18958-18963.
    • (2007) Proc. Natl. Acad. Sci. USA , vol.104 , pp. 18958-18963
    • Artyomov, M.N.1    Das, J.2    Chakraborty, A.K.3
  • 13
    • 68849093960 scopus 로고    scopus 로고
    • Stochastic bifurcation, slow fluctuations, and bistability as an origin of biochemical complexity
    • Qian, H., P.-Z. Shi, and J. Xing. 2009. Stochastic bifurcation, slow fluctuations, and bistability as an origin of biochemical complexity. Phys. Chem. Chem. Phys. 11:4861-4870.
    • (2009) Phys. Chem. Chem. Phys , vol.11 , pp. 4861-4870
    • Qian, H.1    Shi, P.-Z.2    Xing, J.3
  • 14
    • 33750121794 scopus 로고    scopus 로고
    • Protein synthesis molecule by molecule
    • Golding, I., and E. C. Cox. 2006. Protein synthesis molecule by molecule. Genome Biol. 7:221.
    • (2006) Genome Biol , vol.7 , pp. 221
    • Golding, I.1    Cox, E.C.2
  • 15
    • 54249083606 scopus 로고    scopus 로고
    • A stochastic single-molecule event triggers phenotype switching of a bacterial cell
    • Choi, P. J., L. Cai, ..., X. S. Xie. 2008. A stochastic single-molecule event triggers phenotype switching of a bacterial cell. Science. 322:442-446.
    • (2008) Science , vol.322 , pp. 442-446
    • Choi, P.J.1    Cai, L.2    Xie, X.S.3
  • 16
    • 33749842033 scopus 로고    scopus 로고
    • Deviant effects in molecular reaction pathways
    • Samoilov, M. S., and A. P. Arkin. 2006. Deviant effects in molecular reaction pathways. Nat. Biotechnol. 24:1235-1240.
    • (2006) Nat. Biotechnol , vol.24 , pp. 1235-1240
    • Samoilov, M.S.1    Arkin, A.P.2
  • 17
    • 0010424768 scopus 로고
    • A mechanism for memory storage insensitive to molecular turnover: A bistable autophosphorylating kinase
    • Lisman, J. E. 1985. A mechanism for memory storage insensitive to molecular turnover: a bistable autophosphorylating kinase. Proc. Natl. Acad. Sci. USA. 82:3055-3057.
    • (1985) Proc. Natl. Acad. Sci. USA , vol.82 , pp. 3055-3057
    • Lisman, J.E.1
  • 18
    • 44349161113 scopus 로고    scopus 로고
    • A mechanism for SRC kinase-dependent signaling by noncatalytic receptors
    • Cooper, J. A., and H. Qian. 2008. A mechanism for SRC kinase-dependent signaling by noncatalytic receptors. Biochemistry. 47:5681-5688.
    • (2008) Biochemistry , vol.47 , pp. 5681-5688
    • Cooper, J.A.1    Qian, H.2
  • 19
    • 85031338803 scopus 로고    scopus 로고
    • Reference deleted in proof
    • Reference deleted in proof.
  • 21
    • 33748107406 scopus 로고    scopus 로고
    • Phosphorylation energy hypothesis: Open chemical systems and their biological functions
    • Qian, H. 2007. Phosphorylation energy hypothesis: open chemical systems and their biological functions. Annu. Rev. Phys. Chem. 58:113-142.
    • (2007) Annu. Rev. Phys. Chem , vol.58 , pp. 113-142
    • Qian, H.1
  • 22
    • 0032496358 scopus 로고    scopus 로고
    • The biochemical basis of an all-or-none cell fate switch in Xenopus oocytes
    • Ferrell, Jr., J. E. J., and E. M. Machleder. 1998. The biochemical basis of an all-or-none cell fate switch in Xenopus oocytes. Science. 280:895-898.
    • (1998) Science , vol.280 , pp. 895-898
    • Ferrell Jr., J.E.J.1    Machleder, E.M.2
  • 23
    • 0037605637 scopus 로고    scopus 로고
    • Bistability in cell signaling: How to make continuous processes discontinuous, and reversible processes irreversible
    • Ferrell, J. E., and W. Xiong. 2001. Bistability in cell signaling: how to make continuous processes discontinuous, and reversible processes irreversible. Chaos. 11:227-236.
    • (2001) Chaos , vol.11 , pp. 227-236
    • Ferrell, J.E.1    Xiong, W.2
  • 24
    • 18144407314 scopus 로고    scopus 로고
    • Nonequilibrium thermodynamics and nonlinear kinetics in a cellular signaling switch
    • Qian, H., and T. C. Reluga. 2005. Nonequilibrium thermodynamics and nonlinear kinetics in a cellular signaling switch. Phys. Rev. Lett. 94:028101.
    • (2005) Phys. Rev. Lett , vol.94 , pp. 028101
    • Qian, H.1    Reluga, T.C.2
  • 25
    • 70349931588 scopus 로고    scopus 로고
    • Thermodynamic limit of a nonequilibrium steady-state: Maxwell-type construction for a bistable biochemical system
    • Ge, H., and H. Qian. 2009. Thermodynamic limit of a nonequilibrium steady-state: Maxwell-type construction for a bistable biochemical system. Phys. Rev. Lett. 103:148103.
    • (2009) Phys. Rev. Lett , vol.103 , pp. 148103
    • Ge, H.1    Qian, H.2
  • 26
    • 51649085888 scopus 로고    scopus 로고
    • The effects of reversibility and noise on stochastic phosphorylation cycles and cascades
    • Miller, C. A., and D. A. Beard. 2008. The effects of reversibility and noise on stochastic phosphorylation cycles and cascades. Biophys. J. 95:2183-2192.
    • (2008) Biophys. J , vol.95 , pp. 2183-2192
    • Miller, C.A.1    Beard, D.A.2
  • 28
    • 0141560467 scopus 로고    scopus 로고
    • Thermodynamic and kinetic analysis of sensitivity amplification in biological signal transduction
    • Qian, H. 2003. Thermodynamic and kinetic analysis of sensitivity amplification in biological signal transduction. Biophys. Chem. 105:585-593.
    • (2003) Biophys. Chem , vol.105 , pp. 585-593
    • Qian, H.1
  • 29
    • 34250698472 scopus 로고    scopus 로고
    • A quasistationary analysis of a stochastic chemical reaction: Keizer's paradox
    • Vellela, M., and H. Qian. 2007. A quasistationary analysis of a stochastic chemical reaction: Keizer's paradox. Bull. Math. Biol. 69:1727-1746.
    • (2007) Bull. Math. Biol , vol.69 , pp. 1727-1746
    • Vellela, M.1    Qian, H.2
  • 30
    • 52949108888 scopus 로고    scopus 로고
    • The smallest multistationary chemical reaction network
    • Shiu, A. 2008. The smallest multistationary chemical reaction network. Lecture Notes In Computer Science. 5147:172-184.
    • (2008) Lecture Notes In Computer Science , vol.5147 , pp. 172-184
    • Shiu, A.1
  • 33
    • 69949088230 scopus 로고    scopus 로고
    • Stochastic dynamics and non-equilibrium thermodynamics of a bistable chemical system: The Schlögl model revisited
    • Vellela, M., and H. Qian. 2009. Stochastic dynamics and non-equilibrium thermodynamics of a bistable chemical system: the Schlögl model revisited. J.R. Soc. Interface. 6:925-940.
    • (2009) J.R. Soc. Interface , vol.6 , pp. 925-940
    • Vellela, M.1    Qian, H.2
  • 35
    • 33746689858 scopus 로고    scopus 로고
    • Metabolic futile cycles and their functions: A systems analysis of energy and control
    • Qian, H., and D. A. Beard. 2006. Metabolic futile cycles and their functions: a systems analysis of energy and control. IEE Proc. Syst. Biol. 153:192-200.
    • (2006) IEE Proc. Syst. Biol , vol.153 , pp. 192-200
    • Qian, H.1    Beard, D.A.2
  • 36
    • 0001424903 scopus 로고
    • An amplified sensitivity arising from covalent modification in biological systems
    • Goldbeter, A., and D. E. J. Koshland, Jr. 1981. An amplified sensitivity arising from covalent modification in biological systems. Proc. Natl. Acad. Sci. USA. 78:6840-6844.
    • (1981) Proc. Natl. Acad. Sci. USA , vol.78 , pp. 6840-6844
    • Goldbeter, A.1    Koshland Jr., D.E.J.2
  • 37
    • 0033855774 scopus 로고    scopus 로고
    • Fluctuations and quality of control in biological cells: Zero-order ultrasensitivity reinvestigated
    • Berg, O. G., J. Paulsson, and M. Ehrenberg. 2000. Fluctuations and quality of control in biological cells: zero-order ultrasensitivity reinvestigated. Biophys. J. 79:1228-1236.
    • (2000) Biophys. J , vol.79 , pp. 1228-1236
    • Berg, O.G.1    Paulsson, J.2    Ehrenberg, M.3
  • 38
    • 39749178412 scopus 로고    scopus 로고
    • Temporal cooperativity and sensitivity amplification in biological signal transduction
    • Qian, H., and J. A. Cooper. 2008. Temporal cooperativity and sensitivity amplification in biological signal transduction. Biochemistry. 47:2211-2220.
    • (2008) Biochemistry , vol.47 , pp. 2211-2220
    • Qian, H.1    Cooper, J.A.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.