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Volumn 106, Issue 47, 2009, Pages 19824-19829

Single molecule detection of direct, homologous, DNA/DNA pairing

Author keywords

dsDNA; Sequence dependent

Indexed keywords

BIOTIN; DNA; DNA B; DOUBLE STRANDED DNA; SODIUM CHLORIDE;

EID: 73949141761     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.0911214106     Document Type: Article
Times cited : (66)

References (47)
  • 1
    • 58149190443 scopus 로고    scopus 로고
    • eds Benavente R, Volff J-N Karger, Basel, pp
    • McKee BD (2009) in Meiosis, eds Benavente R, Volff J-N (Karger, Basel), pp 56-68.
    • (2009) Meiosis , pp. 56-68
    • McKee, B.D.1
  • 2
    • 0242361624 scopus 로고    scopus 로고
    • Meiotic double-strand breaks at the interface of chromosome movement, chromosome remodeling, and reductional division
    • Storlazzi A, et al. (2003) Meiotic double-strand breaks at the interface of chromosome movement, chromosome remodeling, and reductional division. Genes Dev 17:2675-2687.
    • (2003) Genes Dev , vol.17 , pp. 2675-2687
    • Storlazzi, A.1
  • 3
    • 0028247038 scopus 로고
    • Chromosome pairing via multiple interstitial interactions before and during meiosis in yeast
    • Weiner BM, Kleckner N (1994) Chromosome pairing via multiple interstitial interactions before and during meiosis in yeast. Cell 77:977-991.
    • (1994) Cell , vol.77 , pp. 977-991
    • Weiner, B.M.1    Kleckner, N.2
  • 4
    • 0034007469 scopus 로고    scopus 로고
    • Progression of meiotic DNA replication is regulated by interchromosomal interaction proteins, negatively by Spo11p and positively by Rec8p
    • Cha RS, Weiner BM, Keeney S, Dekker J, Kleckner N (2000) Progression of meiotic DNA replication is regulated by interchromosomal interaction proteins, negatively by Spo11p and positively by Rec8p. Genes Dev 14:493-503.
    • (2000) Genes Dev , vol.14 , pp. 493-503
    • Cha, R.S.1    Weiner, B.M.2    Keeney, S.3    Dekker, J.4    Kleckner, N.5
  • 5
    • 0030133291 scopus 로고    scopus 로고
    • Communication between homologous chromosomes: Genetic alterations at a nuclease-hypersensitive site can alter mitotic chromatin structure at that site both in cis and in trans
    • Keeney S, Kleckner N (1996) Communication between homologous chromosomes: Genetic alterations at a nuclease-hypersensitive site can alter mitotic chromatin structure at that site both in cis and in trans. Genes Cells 1:475-489.
    • (1996) Genes Cells , vol.1 , pp. 475-489
    • Keeney, S.1    Kleckner, N.2
  • 7
    • 0033564242 scopus 로고    scopus 로고
    • Somatic pairing of homologs in budding yeast: Existence and modulation
    • Burgess SM, Kleckner N, Weiner BM (1999) Somatic pairing of homologs in budding yeast: Existence and modulation. Genes Dev 13:1627-1641.
    • (1999) Genes Dev , vol.13 , pp. 1627-1641
    • Burgess, S.M.1    Kleckner, N.2    Weiner, B.M.3
  • 8
    • 0028148679 scopus 로고
    • Dynamics of chromosome organization and pairing during meiotic prophase in fission yeast
    • Scherthan H, Bähler J, Kohli J (1994) Dynamics of chromosome organization and pairing during meiotic prophase in fission yeast. J Cell Biol 127:273-285.
    • (1994) J Cell Biol , vol.127 , pp. 273-285
    • Scherthan, H.1    Bähler, J.2    Kohli, J.3
  • 9
    • 40849105359 scopus 로고    scopus 로고
    • Examination of interchromosomal interactions in vegetatively growing diploid Schizosaccharomyces pombe cells by Cre/loxP site-specific recombination
    • Molnar M, Kleckner N (2008) Examination of interchromosomal interactions in vegetatively growing diploid Schizosaccharomyces pombe cells by Cre/loxP site-specific recombination. Genetics 178:99-112.
    • (2008) Genetics , vol.178 , pp. 99-112
    • Molnar, M.1    Kleckner, N.2
  • 10
    • 0033574570 scopus 로고    scopus 로고
    • Gene silencing: Repeats that count
    • Selker EU (1999) Gene silencing: Repeats that count. Cell 97:157-160.
    • (1999) Cell , vol.97 , pp. 157-160
    • Selker, E.U.1
  • 12
    • 36849038994 scopus 로고    scopus 로고
    • Sensing X chromosome pairs before X inactivation via a novel X-pairing region of the Xic
    • Augui S, et al. (2007) Sensing X chromosome pairs before X inactivation via a novel X-pairing region of the Xic. Science 318:1632-1636.
    • (2007) Science , vol.318 , pp. 1632-1636
    • Augui, S.1
  • 13
    • 33644557773 scopus 로고    scopus 로고
    • Transient homologous chromosome pairing marks the onset of X inactivation
    • Xu N, Tsai CL, Lee JT (2006) Transient homologous chromosome pairing marks the onset of X inactivation. Science 311:1149-1152.
    • (2006) Science , vol.311 , pp. 1149-1152
    • Xu, N.1    Tsai, C.L.2    Lee, J.T.3
  • 14
    • 35649000946 scopus 로고    scopus 로고
    • Evidence that homologous X-chromosome pairing requires transcription and Ctcf protein
    • Xu N, Donohoe ME, Silva SS, Lee JT (2007) Evidence that homologous X-chromosome pairing requires transcription and Ctcf protein. Nat Genet 39:1390-1396.
    • (2007) Nat Genet , vol.39 , pp. 1390-1396
    • Xu, N.1    Donohoe, M.E.2    Silva, S.S.3    Lee, J.T.4
  • 15
    • 67650076211 scopus 로고    scopus 로고
    • The pluripotency factor Oct4 interacts with Ctcf and also controls X-chromosome pairing and counting
    • Donohoe ME, Silva SS, Pinter SF, Xu N, Lee JT (2009) The pluripotency factor Oct4 interacts with Ctcf and also controls X-chromosome pairing and counting. Nature 460:129-132.
    • (2009) Nature , vol.460 , pp. 129-132
    • Donohoe, M.E.1    Silva, S.S.2    Pinter, S.F.3    Xu, N.4    Lee, J.T.5
  • 16
    • 0015242770 scopus 로고
    • Models of specifically paired like (homologous) nucleic acid structures
    • McGavin S (1971) Models of specifically paired like (homologous) nucleic acid structures. J Mol Biol 55:293-298.
    • (1971) J Mol Biol , vol.55 , pp. 293-298
    • McGavin, S.1
  • 17
    • 0035896663 scopus 로고    scopus 로고
    • Sequence recognition in the pairing of DNA duplexes
    • Kornyshev AA, Leikin S (2001) Sequence recognition in the pairing of DNA duplexes. Phys Rev Lett 86:3666-3669.
    • (2001) Phys Rev Lett , vol.86 , pp. 3666-3669
    • Kornyshev, A.A.1    Leikin, S.2
  • 18
    • 18144376538 scopus 로고    scopus 로고
    • Electrostatic zipper motif for DNA aggregation
    • Kornyshev AA, Leikin S (1999) Electrostatic zipper motif for DNA aggregation. Phys Rev Lett 82:4138-4141.
    • (1999) Phys Rev Lett , vol.82 , pp. 4138-4141
    • Kornyshev, A.A.1    Leikin, S.2
  • 20
    • 0028232143 scopus 로고
    • Temperature-induced complementarity as a mechanism for biomolecular assembly
    • Leikin S, Parsegian VA (1994) Temperature-induced complementarity as a mechanism for biomolecular assembly. Proteins 19:73-76.
    • (1994) Proteins , vol.19 , pp. 73-76
    • Leikin, S.1    Parsegian, V.A.2
  • 21
    • 63849253156 scopus 로고    scopus 로고
    • The homology recognition well as an innate property of DNA structure
    • Kornyshev AA, Wynveen A (2009) The homology recognition well as an innate property of DNA structure. Proc Natl Acad Sci USA 106:4683-4688.
    • (2009) Proc Natl Acad Sci USA , vol.106 , pp. 4683-4688
    • Kornyshev, A.A.1    Wynveen, A.2
  • 22
    • 0034714010 scopus 로고    scopus 로고
    • One angstrom crystal structures of B-DNA reveal sequence specific binding and groove-specific bending of DNA by magnesium and calcium
    • Chiu TK, Dickerson RE (2000) One angstrom crystal structures of B-DNA reveal sequence specific binding and groove-specific bending of DNA by magnesium and calcium. J Mol Biol 301:915-945.
    • (2000) J Mol Biol , vol.301 , pp. 915-945
    • Chiu, T.K.1    Dickerson, R.E.2
  • 25
    • 2642527925 scopus 로고    scopus 로고
    • Torsional deformation of double Helix in interaction and aggregation of DNA
    • Cherstvy AG, Kornyshev AA, Leikin S (2004) Torsional deformation of double Helix in interaction and aggregation of DNA. J Phys Chem B 108:6508-6518.
    • (2004) J Phys Chem B , vol.108 , pp. 6508-6518
    • Cherstvy, A.G.1    Kornyshev, A.A.2    Leikin, S.3
  • 26
    • 42749098880 scopus 로고    scopus 로고
    • A Nonlinear effects in torsional adjustment of interacting DNA
    • Kornyshev AA, Wynveen (2004) A Nonlinear effects in torsional adjustment of interacting DNA. Phys Rev E Stat Nonlin Soft Matter Phys 69:041905.
    • (2004) Phys Rev E Stat Nonlin Soft Matter Phys , vol.69 , pp. 041905
    • Kornyshev, A.A.1    Wynveen2
  • 27
    • 39149138419 scopus 로고    scopus 로고
    • DNA double helices recognize mutual sequence homology in a protein free environment
    • Baldwin GS, et al. (2008) DNA double helices recognize mutual sequence homology in a protein free environment. J Phys Chem 112:1060-1064.
    • (2008) J Phys Chem , vol.112 , pp. 1060-1064
    • Baldwin, G.S.1
  • 28
    • 33846095964 scopus 로고    scopus 로고
    • Self-assembly of double-stranded DNA molecules at nanomolar concentrations
    • Inoue S, Sugiyama S, Travers AA, Ohyama T (2007) Self-assembly of double-stranded DNA molecules at nanomolar concentrations. Biochemistry 46:164-171.
    • (2007) Biochemistry , vol.46 , pp. 164-171
    • Inoue, S.1    Sugiyama, S.2    Travers, A.A.3    Ohyama, T.4
  • 29
    • 53249083943 scopus 로고    scopus 로고
    • The role of specialized transcription factories in chromosome pairing
    • Xu M, Cook PR (2008) The role of specialized transcription factories in chromosome pairing. Biochimica et Biophysica Acta 1783:2155-2160.
    • (2008) Biochimica et Biophysica Acta , vol.1783 , pp. 2155-2160
    • Xu, M.1    Cook, P.R.2
  • 30
    • 0023788886 scopus 로고
    • Formation of parallel four-stranded complexes by guanine-rich motifs in DNA and its implications for meiosis
    • Sen D, Gilbert W (1988) Formation of parallel four-stranded complexes by guanine-rich motifs in DNA and its implications for meiosis. Nature 334:364-366.
    • (1988) Nature , vol.334 , pp. 364-366
    • Sen, D.1    Gilbert, W.2
  • 31
    • 0037452772 scopus 로고    scopus 로고
    • DNA unzipped under a constant force exhibits multiple metastable intermediates
    • Danilowicz C, et al. (2003) DNA unzipped under a constant force exhibits multiple metastable intermediates. Proc Natl Acad Sci USA 100:1694-1699.
    • (2003) Proc Natl Acad Sci USA , vol.100 , pp. 1694-1699
    • Danilowicz, C.1
  • 33
    • 14044271924 scopus 로고    scopus 로고
    • Toroidal DNA condensates: Unraveling the fine structure and the role of nucleation in determining size
    • Hud, NV, Vilfan ID (2005) Toroidal DNA condensates: Unraveling the fine structure and the role of nucleation in determining size. Annu Rev Biophys Biomol Struct 34:295-318.
    • (2005) Annu Rev Biophys Biomol Struct , vol.34 , pp. 295-318
    • Hud, N.V.1    Vilfan, I.D.2
  • 34
    • 48849096217 scopus 로고    scopus 로고
    • Hatch K, Danilowicz C, Coljee V, Prentiss M (2008) Demonstration that the shear force required to separate short double-stranded DNA does not increase significantly with sequence length for sequences longer than 25 base pairs. Phys Rev E 78:011920 1-4.
    • Hatch K, Danilowicz C, Coljee V, Prentiss M (2008) Demonstration that the shear force required to separate short double-stranded DNA does not increase significantly with sequence length for sequences longer than 25 base pairs. Phys Rev E 78:011920 1-4.
  • 35
    • 0041306048 scopus 로고    scopus 로고
    • Like-charge attraction between polyelectrolytes induced by counterion charge density waves
    • Angelini TE, Liang H, Wriggers W, Wong GCL (2003) Like-charge attraction between polyelectrolytes induced by counterion charge density waves. Proc Natl Acad Sci USA 100:8634-8637.
    • (2003) Proc Natl Acad Sci USA , vol.100 , pp. 8634-8637
    • Angelini, T.E.1    Liang, H.2    Wriggers, W.3    Wong, G.C.L.4
  • 36
    • 0022380890 scopus 로고
    • Evidence that intracellular magnesium is present in cells at a regulatory concentration for protein synthesis
    • Terasaki M, Rubin H (1985) Evidence that intracellular magnesium is present in cells at a regulatory concentration for protein synthesis. Proc Natl Acad Sci USA 82:7324-7326.
    • (1985) Proc Natl Acad Sci USA , vol.82 , pp. 7324-7326
    • Terasaki, M.1    Rubin, H.2
  • 38
    • 42149084413 scopus 로고    scopus 로고
    • Probing the mechanical stability of DNA in the presence of monovalent cations
    • Vlassakis J, et al. (2008) Probing the mechanical stability of DNA in the presence of monovalent cations. J Am Chem Soc 130:5004-5005.
    • (2008) J Am Chem Soc , vol.130 , pp. 5004-5005
    • Vlassakis, J.1
  • 40
    • 0033565267 scopus 로고    scopus 로고
    • Nucleic acid duplex stability: Influence of base composition on cation effects
    • Nakano S, Fujimoto M, Hara H, Sugimoto N (1999) Nucleic acid duplex stability: Influence of base composition on cation effects. Nucleic Acids Res 27:2957-2965.
    • (1999) Nucleic Acids Res , vol.27 , pp. 2957-2965
    • Nakano, S.1    Fujimoto, M.2    Hara, H.3    Sugimoto, N.4
  • 43
    • 3042596869 scopus 로고    scopus 로고
    • The role of water in protein-DNA recognition
    • Jayaram B, Jain T (2004) The role of water in protein-DNA recognition. Ann Rev Phys Biomol Struc 33:343-361.
    • (2004) Ann Rev Phys Biomol Struc , vol.33 , pp. 343-361
    • Jayaram, B.1    Jain, T.2
  • 44
    • 67549115957 scopus 로고    scopus 로고
    • Dynamics of tRNA at different levels of hydration
    • Roh JH, et al. (2009) Dynamics of tRNA at different levels of hydration. Biophys J 96:2755-2762.
    • (2009) Biophys J , vol.96 , pp. 2755-2762
    • Roh, J.H.1
  • 45
    • 0027821288 scopus 로고
    • Potential advantages of unstable interactions for pairing of chromosomes in meiotic, somatic, and premeiotic cells
    • Kleckner N, Weiner BM (1993) Potential advantages of unstable interactions for pairing of chromosomes in meiotic, somatic, and premeiotic cells. Cold Spring Harb Symp Quant Biol 58:553-565.
    • (1993) Cold Spring Harb Symp Quant Biol , vol.58 , pp. 553-565
    • Kleckner, N.1    Weiner, B.M.2
  • 46
    • 73949113078 scopus 로고    scopus 로고
    • Self-assembly from the nanoscale to the mesoscale: Applications to 1D
    • PhD Thesis, Harvard University, Cambridge MA
    • Feinstein E (2009) Self-assembly from the nanoscale to the mesoscale: Applications to 1D, 2D, and 3D tissue engineering, and to DNA sequence recognition. PhD Thesis, Harvard University, Cambridge MA.
    • (2009) 2D, and 3D tissue engineering, and to DNA sequence recognition
    • Feinstein, E.1
  • 47
    • 0032489867 scopus 로고    scopus 로고
    • Homologous chromosome pairing in Drosophila melanogaster proceeds through multiple independent initiations
    • Fung JC, Marshall WF, Dernburg A, Agard DA, Sedat JW (1998) Homologous chromosome pairing in Drosophila melanogaster proceeds through multiple independent initiations. J Cell Biol 141:5-20.
    • (1998) J Cell Biol , vol.141 , pp. 5-20
    • Fung, J.C.1    Marshall, W.F.2    Dernburg, A.3    Agard, D.A.4    Sedat, J.W.5


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