Reconstruction of the climate envelopes of salamanders and their evolution through time

Proceedings of the National Academy of Sciences of the United States of America

Volumn 106, Issue SUPPL. 2, 2009, Pages 19715-19722

  Vieites, David R ^a   Nieto Román, Sandra ^a,b   Wake, David B ^c  

^a MUSEO NACIONAL DE CIENCIAS NATURALES   (Spain)

^b UNIVERSITY OF VIGO   (Spain)

^c UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

Grinnellian niches; Niche evolution; Phylogenetic analysis; Salamandridae

Indexed keywords

CLIMATE CHANGE; CONFERENCE PAPER; CONTROLLED STUDY; ECOLOGICAL NICHE; EVOLUTIONARY RATE; GLOBAL CLIMATE; MOLECULAR PHYLOGENY; NONHUMAN; PRIORITY JOURNAL; SALAMANDER; AMPHIBIA; ANIMAL; ARTICLE; CHEMICAL STRUCTURE; ECOSYSTEM; PHYLOGENY; PHYSIOLOGY;

GRINNELLIA; SALAMANDRIDAE; SALAMANDROIDEA;

ANIMALS; CLIMATE CHANGE; ECOSYSTEM; MODELS, MOLECULAR; PHYLOGENY; URODELA;

EID: 73949091166     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.0902956106     Document Type: Article

References (49)

1. Hijmans RJ, Cameron SE, Parra JL, Jones PG, Jarvis A (2005) Very high resolution interpolated climate surfaces for global land areas. Int J Climatol 25:1965-1978.
2. Elith J, et al. (2006) Novel methods improve prediction of species' distributions from occurrence data. Ecography 29:129-151.
3. Zhang P, Papenfuss TJ, Wake MH, Qu L,Wake DB (2008) Phylogeny and biogeography of the family Salamandridae (Amphibia: Caudata) inferred from complete mitochondrial genomes. Mol Phyl Evol 49:586-597.
4. Vieites DR, MinMS,WakeD(2007) Rapid diversification and dispersal during global warming periods by plethodontid salamanders. Proc Natl Acad Sci USA 104:19903-19907.
5. Kozak KH, Wiens JJ (2006) Does niche conservatism promote speciation? A case study in North American salamanders. Evolution (Lawrence, Kans) 60:2604-2621.
6. Wake DB, Roth G, Wake MH (1983) On the problem of stasis in organismal evolution. J Theor Biol 101:211-224.
7. Wake DB (2006) Problems with species: Patterns and processes of species formation in salamanders. Ann Miss Bot Garden 93:8-23.
8. Weisrock DW, et al. (2006) A molecular assessment of phylogenetic relationships and lineage accumulation rates within the family Salamandridae (Amphibia, Caudata). Mol Phyl Evol 41:368-383.
9. Pagel M (1999) Inferring the historical patterns of biological evolution. Nature 401:877-884.
10. Babik W, et al. (2005) Phylogeography of two European newt species. Discordance between mtDNA and morphology. Mol Ecol 14:2475-2491.
11. Nogués-Bravo D (2009) Predicting the past distribution of species climatic niches. Glob Ecol Biog 18:521-553.
12. Kearney M, Porter WP (2004) Mapping the fundamental niche: Physiology, climate, and the distribution of a nocturnal lizard. Ecology 85:3119-3131.
13. Kearney M, PorterW(2009) Mechanistic niche modeling: Combining physiological and spatial data to predict species' ranges. Ecol Lett 12:334-350.
14. Adams DC, West ME, Collyer ML (2007) Location-specific sympatric morphological divergence as a possible response to species interactions in West Virginia Plethodon salamander communities. J Anim Ecol 76:289-295.
15. Graham CH, Ron SR, Santos JC, Schneider CJ, Moritz C (2004) Integrating phylogenetics and environmental niche models to explore speciation mechanisms in dendrobatid frogs. Evolution (Lawrence, Kans) 58:1781-1793.
16. Estes R (1981) Gymnophiona, Caudata. Encyclopedia of Paleoherpetology, ed Wellnhofer P (Gustav Fischer, Stuttgart), pp 1-115.
17. Mosbrugger V, Utescher T, Dilcher DL (2005) Cenozoic continental climatic evolution of Central Europe. Proc Natl Acad Sci USA 102:14964-14969.
18. Steinfartz S, Vicario S, Arntzen JW, CacconeA(2007)ABayesian approach on molecules and behavior: Reconsidering phylogenetic and evolutionary patterns of the Salamandridae. J Exp Zool 308:139-162.
19. Hardy CR, Linder HP (2005) Intraspecific variability and timing in ancestral ecology reconstruction: A test case from the Cape Flora. Sys Biol 54:299-316.
20. Maddison WP, Maddison DR (2009) Mesquite: A Modular System for Evolutionary Analysis (The University of Arizona), Version 2.6.
21. Schluter D, Price T, Mooers AO, Ludwig D (1997) Likelihood of ancestor states in adaptive radiation. Evolution (Lawrence, Kans) 51:1699-1711.
22. Smith EN, Gutberlet RL (2001) Generalized frequency coding: A method of preparing polymorphic multistate characters for phylogenetic analysis. Sys Biol 50:156-169.
23. Rice NH, Martínez-Meyer E, Peterson AT (2003) Ecological niche differentiation in the Aphelocoma jays: A phylogenetic perspective. Biol J Linn Soc 80:369-383.
24. Yesson C, Culham A (2006) Phyloclimatic modeling: Combining phylogenetics and bioclimatic modeling. Sys Biol 55:785-802.
25. Prinzing A, Durka W, Krotz S, Brandl R (2001) The niche of higher plants: Evidence for phylogenetic conservatism. Proc R Soc London Ser B 268:2383-2389.
26. Hoffmann MH (2005) Evolution of the realized climatic niche in the genus arabidopsis (Brassicaceae). Evolution (Lawrence, Kans) 59:1425-1436.
27. Wiens JJ, Donoghue MJ (2004) Historical biogeography, ecology, and species richness. Trends Ecol Evol 19:639-644.
28. Losos JB (2008) Phylogenetic niche conservatism, phylogenetic signal, and the relationship between phylogenetic relatedness and ecological similarity among species. Ecol Lett 11:995-1007.
29. Wiens JJ, Graham CH (2005) Niche conservatism: Integrating evolution, ecology, and conservation biology. Annu Rev Ecol Evol Syst 36:519-539.
30. Wiens JJ (2008) Commentary on Losos (2008): Niche conservatism dejávu. Ecol Lett 11:1004-1005.
31. Vences M, Wake DB (2007) Speciation, species boundaries, and phylogeography of amphibians. Amphibian Biol 6:2613-2669.
32. Caccone A, Milinkovitch MC, Sbordoni V, Powell JR (1994) Molecular biogeography: Using the Corsica-Sardinia microplate disjunction to calibrate mitochondrial rDNA evolutionary rates in mountain newts (Euproctus). J Evol Biol 7:227-245.
33. Veith M, et al. (2008) Cracking the nut: Geographical adjacency of sister taxa supports vicariance in a polytomic salamander clade in the absence of node support. Mol Phyl Evol 47:916-931.
34. Kuchta SR (2007) Contact zones and species limits: Hybridization between lineages of the California newt, Tarich torosa, in the southern Sierra Nevada. Herpetologica 63:332-350.
35. Litvinchuk SN, Zuiderwijk A, Borkin LJ, Rosanov JM (2005) Taxonomic status of Triturus vittatus (Amphibia: Salamandridae) in western Turkey: Trunk vertebrae count, genome size, and allozyme data. Amph Rep 26:305-323.
36. Rissler LJ, Apodaca JJ (2007) Adding more ecology into species delimitation: Ecological niche models and phylogeography help define cryptic species in the Black Salamander (Aneides flavipunctatus). Sys Biol 56:924-942.
37. Good DA, Wake DB (1992) Geographic variation and speciation in the torrent salamanders of the genus Rhyacotriton (Caudata: Rhyacotritonidae). Univ California Publ Zool 126:1-91.
38. Wake DB, Vredenburg VT (2008) Are we in the midst of the sixth mass extinction? A view from the world of amphibians. Proc Natl Acad Sci USA 105:11466-11473.
39. Wiens JJ, Bonett RM, Chippindale PT (2005) Ontogeny discombobulates phylogeny: Paedomorphosis and higher-level salamander relationships. Sys Biol 54:91-110.
40. Mueller RL, Macey JR, Jaekel M, Wake DB, Boore JL (2004) Morphological homoplasy, life history evolution, and historical biogeography of plethodontid salamanders inferred from complete mitochondrial genomes. Proc Natl Acad Sci USA 101:13820-13825.
41. Kuchta SR, TanAM(2004) Isolation by distance and postglacial range expansion in the rough-skinned newt, Taricha granulosa. Mol Ecol 14:225-244.
42. Schmidt BR, Schaub M, Steinfartz S (2007) Apparent survival of the salamander Salamandra salamandra is low because of high migratory activity. Front Zool 4:19.
43. Knouft JH, Losos JB, Glor RE, Kolbe JJ (2006) Phylogenetic analysis of the evolution of the niche in lizards of the Anolis sagrei group. Ecology 87:S29-S38.
44. Lovette IJ, Hochachka WM (2006) Simultaneous effects of phylogenetic niche conservatism and competition on avian community structure. Ecology 87:S14 -S28.
45. Phillips SJ, Dudik M (2008) Modelling of species distributions with Maxent: New extensions and a comprehensive evaluation. Ecography 31:161-175.
46. Martins EP, Hansen TF (1997) Phylogenies and the comparative method: A general approach to incorporating phylogenetic information into the analysis of interspecific data. Am Nat 149:646-667.
47. Givnish TJ, Sytsma KJ (1997) Molecular Evolution and Adaptive Radiation (Cambridge Univ Press, Cambridge, UK).
48. Webster AJ, Purvis A (2002) Testing the accuracy of methods for reconstructing ancestral states of continuous characters. Proc R Soc London Ser B 269:143-149.
49. Martins EP (1999) Estimation of ancestral states of continuous characters: A computer simulation study. Syst Biol 48:642-650.