Some remarks on evaluating the quality of the multiple sequence alignment based on the BAliBASE benchmark

International Journal of Applied Mathematics and Computer Science

Volumn 19, Issue 4, 2009, Pages 675-678

  Błazewicz, Jacek ^a,b   Formanowicz, Piotr ^a,b   Wojciechowski, Paweł ^a  

^a POZNAN UNIVERSITY OF TECHNOLOGY   (Poland)

^b INSTITUTE OF BIOORGANIC CHEMISTRY   (Poland)

Author keywords

Alignment accuracy; Multiple sequence alignment; Reference alignment

Indexed keywords

ACCURACY MEASURES; ALIGNMENT ACCURACY; ALIGNMENT METHODS; BALIBASE; BLOCK COLUMNS; FORMAL DEFINITION; MULTIPLE SEQUENCE ALIGNMENT; MULTIPLE SEQUENCE ALIGNMENTS;

BENCHMARKING;

ALIGNMENT;

EID: 73949090968     PISSN: 1641876X     EISSN: None     Source Type: Journal    
DOI: 10.2478/v10006-009-0054-y     Document Type: Article

References (2)

1. Thompson, J. D., Koehl, P., Ripp, R. and Poch, O. (2005). Balibase 3.0: Latest developments of the multiple sequence alignment benchmark, PROTEINS: Structure, Function, and Bioinformatics 61(1): 127-136.
2. Thompson, J. D., Plewniak, F. and Poch, O. (1999). A comprehensive comparison of multiple sequence alignment programs, Nucleic Acids Research 27(13): 2682-2690.