Why Rice yellow mottle virus, a rapidly evolving RNA plant virus, is not efficient at breaking rymv1-2 resistance

Molecular Plant Pathology

Volumn 11, Issue 1, 2010, Pages 145-154

  Poulicard, Nils ^a   Pinel Galzi, Agnes ^a   Hebrard, Eugenie ^a   Fargette, Denis ^a  

^a INSTITUT DE RECHERCHE POUR LE DÉVELOPPEMENT   (France)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; GENETICS; GENOTYPE; PATHOGENICITY; PHYSIOLOGY; PLANT VIRUS; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; RNA VIRUS; VIRULENCE;

GENOTYPE; PLANT VIRUSES; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA VIRUSES; VIRULENCE;

RICE YELLOW MOTTLE VIRUS;

EID: 73649127980     PISSN: 14646722     EISSN: 13643703     Source Type: Journal    
DOI: 10.1111/j.1364-3703.2009.00582.x     Document Type: Article

References (39)

1. Acosta-Leal, R., Fawley, M. Rush, C. (2008) Changes in the intraisolate genetic structure of beet necrotic yellow vein virus populations associated with plant resistance breakdown. Virology, 376, 60 68.
2. Albar, L., Bangratz-Reyser, M., Hébrard, E., Ndjiondjop, M.N., Jones, M. Ghesquière, A. (2006) Mutations in the eIF(iso)4G translation initiation factor confer high resistance of rice to Rice yellow mottle virus. Plant J. 47, 417 426.
3. Ali, A. Roossinck, M.J. (2008) Genetic bottlenecks. In : Plant Virus Evolution (Roossinck, M.J. ed.), pp. 123 131. Berlin : Springer.
4. 3 resistance in pepper. Mol. Plant-Microbe Interact. 19, 557 563.
5. Boisnard, A., Albar, L., Thiéméle, D., Rondeau, M. Ghesquière, A. (2007) Evaluation of genes from eIF4E and eIF4G multigenic families as potential candidates for partial resistance QTLs to Rice yellow mottle virus in rice. Theor. Appl. Genet. 116, 53 62.
6. Brugidou, C., Holt, C., Yassi, M.N., Zhang, S., Beachy, R. Fauquet, C. (1995) Synthesis of an infectious full-length cDNA clone of Rice yellow mottle virus and mutagenesis of the coat protein. Virology, 206, 108 115.
7. Elena, S.F. Lenski, R.E. (2003) Evolution experiments with micro-organisms: the dynamics and genetic bases of adaptation. Nature Rev. Genet. 4, 457 469.
8. Fargette, D., Pinel, A., Traoré, O., Ghesquière, A. Konaté, G. (2002) Emergence of resistance-breaking isolates of Rice yellow mottle virus during serial inoculations. Eur. J. Plant Pathol. 108, 585 591.
9. Fargette, D., Pinel, A., Abubakar, Z., Traoré, O., Brugidou, C., Fatogoma, S., Hébrard, E., Choisy, M., Séré, Y., Fauquet, C. Konaté, G. (2004) Inferring the evolutionary history of Rice yellow mottle virus from genomic, phylogenetic, and phylogeographic studies. J. Virol. 78, 3252 3261.
10. Fargette, D., Pinel, A., Rakotomalala, M., Sangu, E., Traoré, O., Sérémé, D., Sorho, F., Issaka, S., Hébrard, E., Séré, Y., Kanyeka, Z. Konaté, G. (2008) Rice yellow mottle virus, an RNA plant virus, evolves as rapidly as most RNA animal viruses. J. Virol. 82, 3584 3589.
11. French, R. Stenger, D.C. (2003) Evolution of wheat streak mosaic virus: dynamics of population growth within plants may explain limited variation. Annu. Rev. Phytopathol. 41, 199 214.
12. Garcia-Arenal, F. McDonald, B.A. (2003) An analysis of the durability of resistance to plant viruses. Phytopathology, 93, 941 952.
13. Gillespie, J.H. (2004) Population Genetics: a Concise Guide, 2nd edn. Baltimore, MD : The Johns Hopkins University Press.
14. Harrison, B.D. (1981) Plant virus ecology: ingredients, interactions and environmental influences. Ann. Appl. Biol. 99, 195 209.
15. Hartl, D. Clark, A. (2007) Principles of Population Genetics, 4th edn. Sunderland, MA : Sinauer Associates.
16. Hébrard, E., Pinel-Galzi, A., Bersoult, A., Siré, C. Fargette, D. (2006) Emergence of a resistance-breaking isolate of Rice yellow mottle virus during serial inoculations is due to a single substitution in the genome-linked viral protein VPg. J. Gen. Virol. 87, 1369 1373.
17. Hébrard, E., Pinel-Galzi, A. Fargette, D. (2008) Virulence domain of the RYMV genome-linked viral protein VPg towards rice rymv1-2-mediated resistance. Arch Virol. 153, 1161 1164.
18. Ioannidou, D., Lett, J., Pinel, A., Assigbetse, K., Brugidou, C., Ghesquière, A., Nicole, M. Fargette, D. (2000) Responses of Oryza sativa japonica sub-species to infection with Rice yellow mottle virus. Phys. Mol. Plant Pathol. 57, 177 188.
19. Lenormand, T., Roze, D. Rousset, F. (2009) Stochasticity in evolution. Trends Ecol. Evol. 24, 157 166.
20. Li, H. Roossinck, M.J. (2004) Genetic bottlenecks reduce population variation in an experimental RNA virus population. J. Virol. 78, 10 582 10 587.
21. Malpica, M., Fraile, A., Moreno, I., Obies, C., Drake, J. Garcia-Arenal, F. (2002) The rate and character of spontaneous mutation in an RNA virus. Genetics 162, 1505 1511.
22. Maule, A., Leh, V. Lederer, C. (2002) The dialogue between viruses and hosts in compatible interactions. Curr. Opin. Plant Biol. 5, 4279 4284.
23. Ndjiondjop, M.N., Albar, L., Fargette, D., Fauquet, C. Ghesquière, A. (1999) The genetic basis of high resistance to Rice yellow mottle virus (RYMV) in cultivars of two cultivated rice species. Plant Dis. 83, 931 935.
24. N'Guessan, P., Pinel, A., Sy, A.A., Ghesquière, A. Fargette, D. (2001) Distribution, pathogenicity, and interactions of two strains of Rice yellow mottle virus in forested and savannah zones of West Africa. Plant Dis. 85, 59 64.
25. Parera, M., Perez-Alvarez, N., Clotet, B. Martinez, M. (2009) Epistasis among deleterious mutations in the HIV-1 protease. J. Mol. Evol. 392, 243 250.
26. Pinel-Galzi, A., Rakotomala, M., Sangu, E., Sorho, F., Kanyeka, Z., Traoré, O., Sérémé, D., Poulicard, N., Rabenantoandro, Y., Séré, Y., Konaté, G., Ghesquière, A., Hébrard, E. Fargette, D. (2007) Theme and variations in the evolutionary pathways to virulence of an RNA plant virus species. PLoS Pathog. 3, e180.
27. Rakotomalala, M., Pinel-Galzi, A., Albar, L., Ghesquière, A., Rabenantoandro, Y., Ramavovololona, P. Fargette, D. (2008) Resistance to Rice yellow mottle virus in germplasm in Madagascar. Eur. J. Plant Pathol. 122, 277 286.
28. Rice, S.H. (2004) Evolutionary Theory: Mathematical and Conceptual Foundations. Sunderland, MA : Sinauer Associates.
29. Robaglia, C. Caranta, C. (2006) Translation initiation factors: a weak link in plant RNA virus infection. Trends Plant Sci. 11, 40 45.
30. Rouzine, I., Rodrigo, A. Coffin, J. (2001) Transition between stochastic evolution and deterministic evolution in the presence of selection: general theory and application to virology. Microbiol. Mol. Biol. Rev. 65, 151 185.
31. Sacristan, S. Garcia-Arenal, F. (2008) The evolution of virulence and pathogenicity in plant pathogen populations. Mol. Plant Pathol. 9, 369 384.
32. Sacristan, S., Fraile, A., Malpica, J.M. Garcia-Arenal, F. (2003) Estimation of population bottlenecks during systemic movement of Tobacco mosaic virus in tobacco plants. J. Virol. 77, 9906 9911.
33. Sanjuan, R., Agudelo-Romero, P. Santiago-Elena, F. (2009) Upper-limit mutation rate estimation for a plant virus. Biol. Lett. 5, 394 396.
34. Shaner, G., Stromberg, E., Lacy, G., Barker, K. Pirone, T. (1992) Nomenclature and concepts of pathogenicity and virulence. Annu. Rev. Phytopathol. 30, 47 66.
35. Sorho, F., Pinel, A., Traoré, O., Bersoult, A., Ghesquière, A., Hébrard, E., Konaté, G., Séré, Y. Fargette, D. (2005) Durability of natural and transgenic resistances in rice to Rice yellow mottle virus. Eur. J. Plant Pathol. 112, 349 359. (Pubitemid 41215968)
36. Traoré, O., Sorho, F., Pinel, A., Abubakar, Z., Banwo, O., Maley, J., Hébrard, E., Winter, S., Sere, Y., Konaté, G. Fargette, D. (2005) Processes of diversification and dispersion of Rice yellow mottle virus inferred from large-scale and high-resolution phylogeographic studies. Mol. Ecol. 14, 2097 2110.
37. Traoré, O., Pinel, A., Hébrard, E., Gumedzoé, M.Y., Fargette, D., Traoré, A.S. Konaté, G. (2006) Occurrence of resistance-breaking isolates of Rice yellow mottle virus in West and Central Africa. Plant Dis. 90, 259 263.
38. Weinreich, D., Watson, R. Chao, L. (2005) Sign epistasis and genetic constraint on evolutionary trajectories. Evolution, 59, 1165 1173.
39. Yeam, I., Cavatorta, J.R., Ripoll, D.R., Kang, B.C. Jahn, M.M. (2007) Functional dissection of naturally occurring amino acid substitutions in eIF4E that confers recessive potyvirus resistance in plants. Plant Cell, 19, 2913 2928.