Methyl DNA immunoprecipitation

Methods in Molecular Biology

Volumn 567, Issue , 2009, Pages 237-247

  Goval, Jean Jacques ^a   Magdalena, Juana ^a  

^a Diagenode Sa   (Belgium)

Author keywords

Immunoprecipitation; internal controls; MeDIP; methylated DNA

Indexed keywords

DNA;

ANIMAL; CHROMATIN IMMUNOPRECIPITATION; DNA METHYLATION; GENETIC EPIGENESIS; HUMAN; METABOLISM; METHODOLOGY; PHYSIOLOGY; REVIEW;

ANIMALS; CHROMATIN IMMUNOPRECIPITATION; DNA; DNA METHYLATION; EPIGENESIS, GENETIC; HUMANS;

EID: 73649084183     PISSN: 10643745     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-1-60327-414-2_15     Document Type: Article

References (14)

1. Ushijima, T., Morimura, K., Hosoya, Y., Okonogi, H., Tatematsu, M., Sugimura, T. and Nagao, M. (1997) Establishment of methylation-sensitive- representational difference analysis and isolation of hypo-and hypermethylated genomic fragments in mouse liver tumors. Proc. Natl. Acad. Sci. U.S.A. 94, 2284-2289. (Pubitemid 27136866)
2. Clark, S. J., Harrison, J., Paul, C. L. and Frommer, M. (1994) High sensitivity mapping of methylated cytosines. Nucleic Acids Res. 22, 2990-2997. (Pubitemid 24260626)
3. Fraga, M. F. and Esteller, M. (2002) DNA methylation: A profile of methods and applications. Biotechniques 33, 636-649.
4. Yang, H. J., Liu, V. W., Wang, Y., Chan, K. Y., Tsang, P. C., Khoo, U. S., Cheung, A. N. and Ngan, H. Y. (2004) Detection of hypermethylated genes in tumor and plasma of cervical cancer patients. Gynecol. Oncol. 93, 435-440. (Pubitemid 38507614)
5. Cross, S. H., Charlton, J. A., Nan, X. and Bird, A. P. (1994) Purification of CpG islands using a methylated DNA binding column. Nat. Genet. 6, 236-244. (Pubitemid 24188619)
6. Yegnasubramanian, S., Lin, X., Haffner, M. C., DeMarzo, A. M. and Nelson, W. G. (2006) Combination of methylated-DNA precipitation and methylation-sensitive restriction enzymes (COMPARE-MS) for the rapid, sensitive and quantitative detection of DNA methylation.Nucleic Acids Res. 34, e19.
7. Gebhard, C., Schwarzfischer, L., Pham, T. H., Andreesen, R., Mackensen, A. and Rehli, M. (2006) Rapid and sensitive detection of CpGmethylation using methyl-binding (MB)-PCR. Nucleic Acids Res. 34, e82.
8. Rauch, T., Li, H., Wu, X. and Pfeifer, G. P. (2006) MIRA-assisted microarray analysis, a new technology for the determination of DNA methylation patterns, identifies frequent methylation of homeodomaincontaining genes in lung cancer cells. Cancer Res. 66, 7939-7947. (Pubitemid 44299157)
9. Weber, M., Davies, J. J., Wittig, D., Oakeley, E. J., Haase, M., Lam, W. L. and Schöbeler, D. (2005) Chromosome-wide and promoterspecific analyses identify sites of differential DNA methylation in normal and transformed human cells. Nat. Genet. 37, 853-862. (Pubitemid 41077111)
10. Klose, R. J., Sarraf, S. A., Schmiedeberg, L., McDermott, S. M., Stancheva, I. and Bird, A. P. (2005) DNA binding selectivity of MeCP2 due to a requirement for A/T sequences adjacent to methyl-CpG. Mol. Cell 19, 667-678. (Pubitemid 41219442)
11. Zhang, X., Yazaki, J., Sundaresan, A., Cokus, S., Chan, S. W., Chen, H., Henderson, I. R., Shinn, P., Pellegrini, M., Jacobsen, S. E. and Ecker, J. R. (2006) Genome-wide highresolution mapping and functional analysis of DNA methylation in arabidopsis. Cell 126, 1189-1201. (Pubitemid 44380289)
12. Rauch, T. A., Zhong, X., Wu, X., Wang, M., Kernstine, K. H., Wang, Z., Riggs, A. D. and Pfeifer, G. P. (2008) High-resolution mapping of DNA hypermethylation and hypomethylation in lung cancer. Proc. Natl. Acad. Sci. U.S.A. 105, 252-257.
13. Weber, M. and Schöbeler, D. (2007) Genomic patterns of DNA methylation: Targets and function of an epigenetic mark. Curr. Opin. Cell Biol. 19, 273-280. (Pubitemid 46899512)
14. Liu, C. L., Schreiber, S. L. and Bernstein, B. E. (2003) Development and validation of a T7 based linear amplification for genomic DNA. BMC Genomics 4, 19.