Temperature random walk sampling of protein configurations

Physica A: Statistical Mechanics and its Applications

Volumn 389, Issue 7, 2010, Pages 1400-1404

  Hansmann, Ulrich H E ^a  

^a MICHIGAN TECHNOLOGICAL UNIVERSITY   (United States)

Author keywords

Global optimization; Monte Carlo; Protein structure prediction; Replica exchange techniques

Indexed keywords

GLOBAL OPTIMIZATION; PROTEINS; RANDOM PROCESSES;

ACCEPTANCE RATE; CONTROL VARIABLE; LOW ENERGY CONFIGURATIONS; PARALLEL TEMPERING; PROTEIN STRUCTURE PREDICTION; REPLICA EXCHANGE; REPLICA EXCHANGE METHOD; VILLIN HEADPIECE;

MONTE CARLO METHODS;

EID: 73449109190     PISSN: 03784371     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.physa.2009.12.027     Document Type: Article

References (15)

1. Hansmann U.H.E., and Okamoto Y. The Generalized-ensemble Approach for Protein Folding imulations. In: Stauffer D. (Ed). Annual Reviews of Computational Physics, Vol. VI (1999), World Scientific, Singapore 129-157
2. Kinnear B.S., Jarrold M.F., and Hansmann U.H.E. J. Mol. Graph. Mod. 22 (2004) 397
3. Berg B.A., and Neuhaus T. Phys. Lett. B 267 (1991) 249
4. Geyer C.J., and Thompson A. J. Amer. Statist. Assoc. 90 (1995) 909
5. Hukushima K., and Nemoto K. J. Phys. Soc. (Jpn.) 65 (1996) 1604
6. Hansmann U.H.E. Chem. Phys. Lett. 281 (1997) 140
7. Nadler W., and Hansmann U.H.E. Phys.Rev. E 75 (2007) 026109
8. Berg B.A. Nature 361 (1993) 708
9. Hansmann U.H.E., and Wille L. Phys. Rev. Lett. 88 6 (2002) 068105
10. Schug A., Wenzel W., and Hansmann U.H.E. J. Chem. Phys. 122 (2005) 194711
11. McKnight C.J., Doehring D.S., Matsudaria P.T., and Kim P.S. J. Mol. Biol. 260 (1996) 126
12. Lyubartsev A.P., Martinovski A.A., Shevkunov S.V., and Vorontsov-Velyaminov P.N. J. Chem. Phys. 96 (1992) 1776-1783
13. Marinari E., and Parisi G. Europhys. Lett. 19 (1992) 451-458
14. Trebst S., Troyer M., and Hansmann U.H.E. J. Chem. Phys. 124 (2006) 174903
15. Nadler W., and Hansmann U.H.E. J. Phys. Chem. B 112 (2008) 10386