Addition of monomeric and polymeric organic substrates alleviates viral lytic pressure on bacterial communities in coastal seawaters

Aquatic Microbial Ecology

Volumn 57, Issue 3, 2009, Pages 343-350

  Motegi, Chiaki ^a,b   Nagata, Toshi ^a  

^a UNIVERSITY OF TOKYO   (Japan)

^b KYOTO UNIVERSITY   (Japan)

Author keywords

Dissolved organic matter; Lytic viral production; Marine environments; Virus bacteria interactions

Indexed keywords

BACTERIA (MICROORGANISMS);

EID: 73449106100     PISSN: 09483055     EISSN: None     Source Type: Journal    
DOI: 10.3354/ame01365     Document Type: Article

References (31)

1. Breitbart M, Middelboe M, Rohwer F (2008) Marine viruses: community dynamics, diversity and impact on microbial processes. In: Kirchman DL (ed) Microbial ecology of the oceans, 2nd edn. John Wiley & Sons, New York, p 443-379
2. Brussaard CPD (2004) Optimization of procedures for counting viruses by flow cytometry. Appl Environ Microbiol 70:1506-1513
3. Castle D, Kirchman DL (2004) Composition of estuarine bacterial communities assessed by denaturing gradient gel electrophoresis and fluorescence in situ hybridization. Limnol Oceanogr Methods 2:303-314
4. Church MJ, Hutchins DA, Ducklow HW (2000) Limitation of bacterial growth by dissolved organic matter and iron in the Southern Ocean. Appl Environ Microbiol 66:455-466
5. Cottrell MT, Kirchman DL (2000) Natural assemblages of marine proteobacteria and members of the Cytophaga-Flavobacter cluster consuming low-and high-molecularweight dissolved organic matter. Appl Environ Microbiol 66:1692-1697
6. Ducklow H (2000) Bacterial production and biomass in the oceans. In: Kirchman DL (ed) Microbial ecology of the oceans. John Wiley & Sons, New York, p 85-120
7. Forde A, Fitzgerald GF (1999) Bacteriophage defense systems in lactic acid bacteria. Antonie Leeuwenhoek 76:89-113
8. Fujisawa H, Morita M (1997) Phage DNA packaging. Genes Cells 2:537-545
9. Fukuda H, Ogawa H, Sohrin R, Yamasaki A, Koike I (2007) Sources of dissolved organic carbon and nitrogen in Otsuchi Bay on the Sanriku ria coast of Japan in the spring. Coast Mar. Sci 31:19-29
10. Helton RR, Cottrell MT, Kirchman DL, Wommack KE (2005) Evaluation of incubation-based methods for estimating virioplankton production in estuaries. Aquat Microb Ecol 41:209-219
11. Hoppe HG (1983) Significance of exoenzymatic activities in the ecology of brackish water: measurements by means of methylumbelliferyl-substrates. Mar. Ecol Prog Ser 11:299-308
12. Kirchman DL (1990) Limitation of bacterial growth by dissolved organic matter in the subarctic Pacific. Mar. Ecol Prog Ser 62:47-54
13. Kirchman DL (2001) Measuring of bacterial biomass production and growth rates from leucine incorporation in natural aquatic environments. In: Paul JH (ed) Methods in microbiology, Vol 30. Academic Press, San Diego, CA, p 227-237
14. Lenski RE (1988) Dynamics of interactions between bacteria and virulent bacteriophage. Adv Microb Ecol 10:1-44
15. Middelboe M (2000) Bacterial growth rate and marine virus-host dynamics. Microb Ecol 40:114-124
16. Motegi C, Nagata T (2007) Enhancement of viral production by addition of nitrogen or nitrogen plus carbon in subtropical surface waters of the South Pacific. Aquat Microb Ecol 48:27-34
17. Motegi C, Nagata T, Miki T, Weinbauer MG, Legendre L, Rassoulzadegan F (2009) Viral control of bacterial growth efficiency in marine pelagic environments. Limnol Oceanogr 54:1901-1910
18. Nagata T (2008) Organic matter-bacteria interactions in seawater. In: Kirchman DL (ed) Microbial ecology of the oceans, 2nd edn. John Wiley & Sons, New York, p 207-241
19. Noble RT, Fuhrman JA (1997) Virus decay and its causes in coastal waters. Appl Environ Microbiol 63:77-83
20. Noble RT, Steward GF (2001) Estimating viral proliferation in aquatic samples. In: Paul JH (ed) Methods in microbiology, Vol 30. Academic Press, San Diego, CA, p 67-84
21. Nuanualsuwan S, Cliver DO (2003) Capsid functions of inactivated human picornaviruses and feline calicivirus. Appl Environ Microbiol 69:350-357
22. Parada V, Herndl GJ, Weinbauer MG (2006) Viral burst size of heterotrophic prokaryotes in aquatic systems. J Mar. Biol Assoc UK 86:613-621
23. Pinhassi J, Azam F, Hemphala J, Long RA, Martinez J, Zweifel UL, Hagstrom A (1999) Coupling between bacterioplankton species composition, population dynamics, and organic matter degradation. Aquat Microb Ecol 17:13-26
24. Steward GF, Wikner J, Smith DC, Cochlan WP, Azam F (1992) Estimation of virus production in the sea: I. Method development. Mar. Microb Food Webs 6:57-78
25. Thingstad TF, Øvreås L, Egge JK, Løvdal T, Heldal M (2005) Use of non-limiting substrates to increase size; a generic strategy to simultaneously optimize uptake and minimize predation in pelagic osmotrophs? Ecol Lett 8:675-682
26. Tuomi P, Fagerbakke KM, Bratbak G, Heldal M (1995) Nutritional enrichment of a microbial community: the effects on activity, elemental composition, community structure and virus production. FEMS Microbiol Ecol 16:123-134
27. Ward RL, Knowlton DR, Winston PE (1986) Mechanism of inactivation of enteric viruses in fresh water. Appl Environ Microbiol 52:450-459
28. Weinbauer MG (2004) Ecology of prokaryotic viruses. FEMS Microbiol Rev 28:127-181
29. Weinbauer MG, Bettarel Y, Cattaneo R, Luef B and others (2009) Viral ecology of organic and inorganic particles in aquatic systems: avenues for further research. Aquat Microb Ecol 57:321-341
30. Williamson SJ, Paul JH (2004) Nutrient stimulation of lytic phage production in bacterial populations of the Gulf of Mexico. Aquat Microb Ecol 36:9-17
31. Zhang R, Weinbauer MG, Qian PY (2007) Viruses and flagellates sustain apparent richness and reduce biomass accumulation of bacterioplankton in coastal marine waters. Environ Microbiol 9:3008-3018