Use of an endoscope-compatible probe to detect colonic dysplasia with Fourier transform infrared spectroscopy

Journal of Biomedical Optics

Volumn 14, Issue 4, 2009, Pages

  MacKanos, Mark A ^a   Hargrove, John ^b   Wolters, Rolf ^b   Du, Christine B ^c   Friedland, Shai ^c   Soetikno, Roy M ^c   Contag, Christopher H ^a   Arroyo, May R ^d   Crawford, James M ^e   Wang, Thomas D ^f  

^a STANFORD UNIVERSITY MEDICAL CENTER   (United States)

^b STI Med Systems   (United States)

^c VA PALO ALTO HEALTH CARE SYSTEM   (United States)

^d UNIVERSITY OF FLORIDA COLLEGE OF MEDICINE   (United States)

^e North Shore LIJ Core Laboratory ^*  (United States)

^f UNIVERSITY OF MICHIGAN   (United States)

Author keywords

cancer; dysplasia; early detection; endoscopy; Fourier transform infrared; optical fiber

Indexed keywords

ABSORBANCE PEAK; BINARY ALGORITHMS; CANCER; COLONIC MUCOSA; CROSS VALIDATION; DYSPLASIA; EARLY DETECTION; EXHAUSTIVE SEARCH; FOURIER TRANSFORM INFRARED; HUMAN SUBJECTS; MIDINFRARED; MOLECULAR COMPOSITIONS; OPTIMAL THRESHOLD; PARTIAL LEAST SQUARES-DISCRIMINANT ANALYSIS; POSITIVE PREDICTIVE VALUES; PREPROCESSING TECHNIQUES; SPECTRAL PREPROCESSING; WAVE NUMBERS;

ABSORPTION; DISCRIMINANT ANALYSIS; DISEASES; ENDOSCOPY; INFRARED ABSORPTION; INFRARED DEVICES; LIGHT ABSORPTION; OPTICAL FIBERS; OPTIMIZATION; SILVER HALIDES; TISSUE;

FOURIER TRANSFORM INFRARED SPECTROSCOPY;

ADULT; AGED; ARTICLE; COLON TUMOR; EQUIPMENT; EQUIPMENT DESIGN; EVALUATION; FEMALE; GASTROINTESTINAL ENDOSCOPE; HUMAN; INFRARED SPECTROSCOPY; INSTRUMENTATION; MIDDLE AGED; REPRODUCIBILITY; SENSITIVITY AND SPECIFICITY; SYSTEM ANALYSIS; TRANSDUCER;

ADULT; AGED; AGED, 80 AND OVER; COLONIC NEOPLASMS; ENDOSCOPES, GASTROINTESTINAL; EQUIPMENT DESIGN; EQUIPMENT FAILURE ANALYSIS; FEMALE; HUMANS; MIDDLE AGED; REPRODUCIBILITY OF RESULTS; SENSITIVITY AND SPECIFICITY; SPECTROSCOPY, FOURIER TRANSFORM INFRARED; SYSTEMS INTEGRATION; TRANSDUCERS;

EID: 73349109529     PISSN: 10833668     EISSN: 15602281     Source Type: Journal    
DOI: 10.1117/1.3174387     Document Type: Article

References (40)

1. American Cancer Society, Cancer Facts and Figures 2008, American Cancer Society, Atlanta (2008).
2. C., Liu and J. M., Crawford, in, Robbins and Cotran Pathologic Basis of Disease, 7th ed., R. S., Cotran, V., Kumar, and, T., Collins, Eds. Saunders, Philadelphia, (2005).
3. D. T., Rubin, J. A., Rothe, J. T., Hetzel, R. D., Cohen, and S. B., Hanauer, " Are dysplasia and colorectal cancer endoscopically visible in patients with ulcerative colitis?, ", Gastrointest. Endosc., 65, 998-1004 (2007). 4qp ZZZZZZ 0016-5107 10.1016/j.gie.2006.09.025 (Pubitemid 46770732)
4. S. F., Chew, B. R., Wood, C., Kanaan, J., Browning, D., MacGregor, I. D., Davis, J., Cebon, B. D., Tait, and D., McNaughton, " Fourier transform infrared imaging as a method for detection of HLA class I expression in melanoma without the use of antibody, ", Tissue Antigens, 69, 252-258 (2007). 7k8 ZZZZZZ 0001-2815 10.1111/j.1399-0039.2006.00775.x (Pubitemid 46625896)
5. S., Mark, R. K., Sahu, K., Kantarovich, A., Podshyvalov, H., Guterman, J., Goldstein, R., Jagannathan, S., Argov, and S., Mordechai, " Fourier transform infrared microspectroscopy as a quantitative diagnostic tool for assignment of premalignancy grading in cervical neoplasia, ", J. Biomed. Opt., 9, 558-567 (2004). jbo JBOPFO 1083-3668 10.1117/1.1699041
6. A., Podshyvalov, R. K., Sahu, S., Mark, K., Kantarovich, H., Guterman, J., Goldstein, R., Jagannathan, S., Argov, and S., Mordechai, " Distinction of cervical cancer biopsies by use of infrared microspectroscopy and probabilistic neural networks, ", Appl. Opt., 44, 3725-3734 (2005). apo APOPAI 0003-6935 10.1364/AO.44.003725 (Pubitemid 40963782)
7. M. J., Romeo, B. R., Wood, M. A., Quinn, and D., McNaughton, " Removal of blood components from cervical smears: implications for cancer diagnosis using FTIR spectroscopy, ", Biopolymers, 72, 69-76 (2003). bpm BIPMAA 0006-3525 10.1002/bip.10284 (Pubitemid 36098158)
8. B. R., Wood, M. A., Quinn, F. R., Burden, and D., McNaughton, " An investigation into FTIR spectroscopy as a biodiagnostic tool for cervical cancer, ", Biospectroscopy, 2, 143-153 (1996). 8ig BIOSFS 1075-4261 10.1002/(SICI)1520-6343(1996)2:3<143::AID-BSPY1>3.0.CO;2-9 (Pubitemid 126790026)
9. J. S., Wang, J. S., Shi, Y. Z., Xu, X. Y., Duan, L., Zhang, J., Wang, L. M., Yang, S. F., Weng, and J. G., Wu, " FT-IR spectroscopic analysis of normal and cancerous tissues of esophagus, ", Aquat. Microb. Ecol., 9, 1897-1899 (2003). crl ZZZZZZ 0948-3055 (Pubitemid 37168408)
10. T. D., Wang, G., Triadafilopoulos, J. M., Crawford, L. R., Dixon, T., Bhandari, P., Sahbaie, S., Friediand, R., Soetikno, and C. H., Contag, " Detection of endogenous biomolecules in Barrett's esophagus by Fourier transform infrared spectroscopy, ", Proc. Natl. Acad. Sci. U.S.A., 104, 15864-15869 (2007). pna PNASA6 0027-8424 10.1073/pnas.0707567104 (Pubitemid 350035390)
11. N., Fujioka, Y., Morimoto, T., Arai, and M., Kikuchi, " Discrimination between normal and malignant human gastric tissues by Fourier transform infrared spectroscopy, ", Cancer Detect. Prev., 28, 32-36 (2004). 3zg CDPRD4 0361-090X 10.1016/j.cdp.2003.11.004 (Pubitemid 39403831)
12. Q. B., Li, X. J., Sun, Y. Z., Xu, L. M., Yang, Y. F., Zhang, S. F., Weng, J. S., Shi, and J. G., Wu, " Diagnosis of gastric inflammation and malignancy in endoscopic biopsies based on Fourier transform infrared spectroscopy, ", Clin. Chem., 51, 346-350 (2005). clc CLCHAU 0009-9147 10.1373/clinchem.2004.037986 (Pubitemid 40175804)
13. K., Yano, S., Ohoshima, Y., Gotou, K., Kumaido, T., Moriguchi, and H., Katayama, " Direct measurement of human lung cancerous and noncancerous tissues by Fourier transform infrared microscopy: can an infrared microscope be used as a clinical tool?, ", Anal. Biochem., 287, 218-225 (2000). ana ANBCA2 0003-2697 10.1006/abio.2000.4872 (Pubitemid 32006230)
14. C. M., Krishna, G. D., Sockalingum, R. A., Bhat, L., Venteo, P., Kushtagi, M., Pluot, and M., Manfait, " FTIR and Raman microspectroscopy of normal, benign, and malignant formalin-fixed ovarian tissues, ", Anal. Bioanal. Chem., 387, 1649-1656 (2007). biv ABCNBP 1618-2642 10.1007/s00216-006- 0827-1
15. E., Gazi, J., Dwyer, P., Gardner, A., Ghanbari-Siahkali, A. P., Wade, J., Miyan, N. P., Lockyer, J. C., Vickerman, N. W., Clarke, J. H., Shanks, L. J., Scott, C. A., Hart, and M., Brown, " Applications of Fourier transform infrared microspectroscopy in studies of benign prostate and prostate cancer. A pilot study, ", J. Pathol., 201, 99-108 (2003). 5le JPTLAS 0022-3417 10.1002/path.1421 (Pubitemid 37121208)
16. S., Argov, J., Ramesh, A., Salman, I., Sinelnikov, J., Goldstein, H., Guterman, and S., Mordechai, " Diagnostic potential of Fourier-transform infrared microspectroscopy and advanced computational methods in colon cancer patients, ", J. Biomed. Opt., 7, 248-254 (2002). jbo JBOPFO 1083-3668 10.1117/1.1463051 (Pubitemid 34699151)
17. S., Argov, R. K., Sahu, E., Bernshtain, A., Salman, G., Shohat, U., Zelig, and S., Mordechai, " Inflammatory bowel diseases as an intermediate stage between normal and cancer: an FTIR-microspectroscopy approach, ", Biopolymers, 75, 384-392 (2004). bpm BIPMAA 0006-3525 10.1002/bip.20154 (Pubitemid 39611426)
18. B., Rigas, S., Morgello, I. S., Goldman, and P. T. T., Wong, " Human colorectal cancers display abnormal Fourier-transform infrared-spectra, ", Proc. Natl. Acad. Sci. U.S.A., 87, 8140-8144 (1990). pna PNASA6 0027-8424 10.1073/pnas.87.20.8140
19. S., Takahashi, A., Satomi, K., Yano, H., Kawase, T., Tanimizu, Y., Tuji, S., Murakami, and R., Hirayama, " Estimation of glycogen levels in human colorectal cancer tissue: relationship with cell cycle and tumor outgrowth, ", World J. Gastroenterol., 34, 474-480 (1999). clr WJGAF2 1007-9327 (Pubitemid 29408173)
20. P. G. L., Andrus and R. D., Strickland, " Cancer grading by Fourier transform infrared spectroscopy, ", Biospectroscopy, 4, 37-46 (1998). 8ig BIOSFS 1075-4261 10.1002/(SICI)1520-6343(1998)4:1<37::AID-BSPY4>3.0.CO;2-P (Pubitemid 128757796)
21. R. K., Sahu, S., Argov, A., Salman, U., Zelig, M., Huleihel, N., Grossman, J., Gopas, J., Kapelushnik, and S., Mordechai, " Can Fourier transform infrared spectroscopy at higher wavenumbers (mid IR) shed light on biomarkers for carcinogenesis in tissues?, ", J. Biomed. Opt., 10, 054017 (2005). jbo JBOPFO 1083-3668 10.1117/1.2080368 (Pubitemid 44256031)
22. U., Bindig, I., Gersonde, M., Meinke, Y., Becker, and G., Muller, " Fiber-optic IR-spectroscopy for biomedical diagnostics, ", Spectroscopy Int. J., 17, 323-344 (2003).
23. U., Bindig, M., Meinke, I., Gersonde, O., Spector, I., Vasserman, A., Katzir, and G., Muller, " IR-biosensor: flat silver halide fiber for bio-medical sensing?, ", Sens. Actuators B, 74, 37-46 (2001). sbc SABCEB 0925-4005 10.1016/S0925-4005(00)00709-7 (Pubitemid 32287940)
24. U., Bindig, and G., Muller, " Fiber-optic laser-assisted infrared tumour diagnostics (FLAIR), ", J. Phys. D, 38, 2716-2731 (2005). jpd JPAPBE 0022-3727 10.1088/0022-3727/38/15/026 (Pubitemid 41078233)
25. U., Bindig, H., Winter, W., Wasche, K., Zelianeos, and G., Muller, " Fiber-optical and microscopic detection of malignant tissue by use of infrared spectrometry, ", J. Biomed. Opt., 7, 100-108 (2002). jbo JBOPFO 1083-3668 10.1117/1.1412439 (Pubitemid 34278418)
26. C., Charlton, A., Katzir, and B., Mizaikoff, " Infrared evanescent field sensing with quantum cascade lasers and planar silver halide waveguides, ", Anal. Chem., 77, 4398-4403 (2005). anc ANCHAM 0003-2700 10.1021/ac048189a (Pubitemid 41542259)
27. S. M., Chiacchiera, and E. M., Kosower, " Deuterium-exchange on micrograms of proteins by attenuated total reflection fourier-transform infrared-spectroscopy on silver-halide fiber, ", Anal. Biochem., 201, 43-47 (1992). ana ANBCA2 0003-2697 10.1016/0003-2697(92)90171-3
28. Z., Hammody, M., Huleihel, A., Salman, S., Argov, R., Moreh, A., Katzir, and S., Mordechai, " Potential of 'flat' fibre evanescent wave spectroscopy to discriminate between normal and malignant cells in vitro, ", J. Microsc., 228, 200-210 (2007). jmi JMICAR 0022-2720 10.1111/j.1365-2818.2007. 01840.x (Pubitemid 350013226)
29. Y., Matsuura, S., Kino, E., Yokoyama, T., Katagiri, H., Sato, and H., Tashiro, " Flexible fiber-optics probes for Raman and FT-IR remote spectroscopy, ", IEEE J. Sel. Top. Quantum Electron., 13, 1704-1708 (2007). isq IJSQEN 1077-260X 10.1109/JSTQE.2007.910111
30. A., Ring, V., Schreiner, H., Wenck, K. P., Wittern, L., Kupper, and R., Keyhani, " Mid-infrared spectroscopy on skin using a silver halide fiber probe in vivo, ", Skin Res. Technol., 12, 18-23 (2006). b5r ZZZZZZ 0909-752X 10.1111/j.0909-725X.2006.00130.x (Pubitemid 43740595)
31. S., Simhony, E. M., Kosower, and A., Katzir, " Fourier-transform infrared-spectra of aqueous protein mixtures using a novel attenuated total internal reflectance cell with infrared fibers, ", Biochem. Biophys. Res. Commun., 142, 1059-1063 (1987). bbr BBRCA9 0006-291X 10.1016/0006-291X(87)91522- 1 (Pubitemid 17021141)
32. S., Dejong, " SIMPLS - an alternative approach to partial least-squares regression, ", Chemom. Intell. Lab. Syst., 18, 251-263 (1993). cil CILSEN 0169-7439 10.1016/0169-7439(93)85002-X (Pubitemid 23112297)
33. P., Geladi, and B. R., Kowalski, " Partial least-squares regression - a tutorial, ", Anal. Chim. Acta, 185, 1-17 (1986). acy ACACAM 0003-2670 10.1016/0003-2670(86)80028-9
34. S., Wold, A., Ruhe, H., Wold, and W. J., Dunn, " The collinearity problem in linear-regression - the partial least-squares (PLS) approach to generalized inverses, ", SIAM (Soc. Ind. Appl. Math.) J. Sci. Stat. Comput., 5, 735-743 (1984). sss SIJCD4 0196-5204
35. B., Wise, N., Gallagher, R., Bro, J., Shaver, W., Windig, and R., Koch, PLS-Toolbox Version 4.0 Manual (2006).
36. A., Savitzky and M. J. E., Golay, " Smoothing and differentiation of data by simplified least squares procedures, ", Anal. Chem., 36, 1627-1639 (1964). anc ANCHAM 0003-2700 10.1021/ac60214a047
37. E., Bogomolny, M., Huleihel, Y., Suproun, R. K., Sahu, and S., Mordechai, " Early spectral changes of cellular malignant transformation using Fourier transform infrared microspectroscopy, ", J. Biomed. Opt., 12, 024003 (2007). jbo JBOPFO 1083-3668 10.1117/1.2717186 (Pubitemid 46930485)
38. M. J., German, A., Hammiche, N., Ragavan, M. J., Tobin, L. J., Cooper, S. S., Matanhelia, A. C., Hindley, C. M., Nicholson, N. J., Fullwood, H. M., Pollock, and F. L., Martin, " Infrared spectroscopy with multivariate analysis potentially facilitates the segregation of different types of prostate cell, ", Biophys. J., 90, 3783-3795 (2006). bio BIOJAU 0006-3495 10.1529/biophysj.105.077255
39. G. W., Lucassen, G. N. A., van Veen, and J. A. J., Jansen, " Band analysis of hydrated human skin stratum corneum attenuated total reflectance Fourier transform infrared spectra, in vivo, ", J. Biomed. Opt., 3, 267-280 (1998). jbo JBOPFO 1083-3668 10.1117/1.429890 (Pubitemid 128635000)
40. I. G., Chong and J., Chi-Hyuck, " Performance of some variable selection methods when multicollinearity is present, ", Chemom. Intell. Lab. Syst., 78, 103-112 (2005). cil CILSEN 0169-7439 10.1016/j.chemolab.2004.12. 011 (Pubitemid 40884382)