PCR-SSCP and sequence analysis of three Odontotermes spp. (Order: Isoptera; Family: Termitidae) on the basis of partial 16SrRNA gene

Molecular and Cellular Biochemistry

Volumn 330, Issue 1-2, 2009, Pages 153-162

  Kumari, Mamtesh ^a,b,c   Sharma, Vijay Lakshmi ^a,b,c   Sodhi, Monika ^a,b,c   Mukesh, Manishi ^a,b,c   Shouche, Yogesh ^a,b,c   Sobti, Ranbir Chander ^a,b,c  

^a PANJAB UNIVERSITY   (India)

^b National Bureau of Animal Genetics Resources   (India)

^c National Centre of Cell Sciences   (India)

Author keywords

16S gene; Divergence; Haplotypes; Isoptera; Neighbour joining method; Odontotermes; Partial sequences; PCR SSCP; Sequencing

Indexed keywords

GENOMIC DNA; RNA 16S;

ARTICLE; CONTROLLED STUDY; DENATURATION; DNA ISOLATION; ELECTROPHORESIS; GENE AMPLIFICATION; GENE CLUSTER; GENE FREQUENCY; GENE SEQUENCE; GENETIC POLYMORPHISM; HAPLOTYPE; ISOPTERA; NONHUMAN; NUCLEOTIDE SEQUENCE; ODONTOTERNES; PHYLOGENETIC TREE; POLYMERASE CHAIN REACTION; PROTEIN CONFORMATION; PROTEIN PURIFICATION; SEQUENCE ANALYSIS;

ANIMALS; BASE COMPOSITION; HAPLOTYPES; ISOPTERA; PHYLOGENY; POLYMERASE CHAIN REACTION; POLYMORPHISM, SINGLE-STRANDED CONFORMATIONAL; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SPECIES SPECIFICITY;

ISOPTERA; MACROTERMITINAE; ODONTOTERMES; ODONTOTERMES OBESUS; TERMITIDAE;

EID: 73349096577     PISSN: 03008177     EISSN: 15734919     Source Type: Journal    
DOI: 10.1007/s11010-009-0128-z     Document Type: Article

References (57)

1. Roonwal ML, Chhotani OB (1989) The fauna of India and adjacent countries: Isoptera (Termites). Zoological Survey of India, Calcutta, p 672
2. Chhotani OB (1997) The fauna of India and the adjacent countries: Isoptera (Termites) (Family: Termitidea). Zoological Survey of India, Calcutta, p 800
3. HC Park JPG Orsini JD Majer RJ Hobbs 1996 A model of litter harvesting by the Western Australian wheatbelt termite, Drepanotermes tamminensis (Hill), with particular reference to nutrient dynamics Ecol Res 11 1 69 78 10.1007/BF02347821 10.1007/BF02347821 1:STN:280:DyaK2s%2Fjs1ygsw%3D%3D
4. Bignell E (2000) Introduction to symbiosis. In: Abe T, Bignell DE, Higashi M (eds) Termites: evolution, sociality, symbioses. Kluwer, Dordrecht, pp 189-209
5. Nutting WL (1990) Insecta, Isoptera. In: Dindal DL (ed) Soil biology guide. Wiley, New York, pp 997-1032
6. Tho TP, Kirton LG (1992) Termites of Peninsular Malaysia. In: Kirton LG (ed) Malayan forest records, vol 36. Forest Research Institute, Kuala Lumpur, Malaysia, p 224
7. T Miura K Maekawa O Kitade T Abe 1998 Phylogenetic relationships among subfamilies in higher termites (Isoptera: Termitidae) based on mitochondrial COII gene sequences Ann Entomol Soc Am 91 515 523 1:CAS:528:DyaK1cXmvFGjurs%3D
8. TM Jenkins CJ Basten S Kresovich BT Forschler 1999 Mitochondrial gene sequence questions Reticulitermes species social structure (Isoptera: Rhinotermitidae) Sociobiology 34 161 172
9. TM Jenkins MI Haverty CJ Basten LJ Nelson M Page BT Forschler 2000 Correlation of mitochondrial haplotypes with cuticular hydrocarbon phenotypes of sympatric Reticulitermes species from the southeastern United States J Chem Ecol 26 1525 1542 10.1023/A:1005548111591 10.1023/A:1005548111591 1:CAS:528:DC%2BD3cXksVKisro%3D (Pubitemid 30421929)
10. TM Jenkins RE Dean R Verkerk BT Forschler 2001 Phylogenetic analysis of two mitochondrial genes and one nuclear intron region illuminate European subterranean termite (Isoptera: Rhinotermitidae) gene flow, taxonomy and introduction dynamics Mol Phylogenet Evol 20 286 293 10.1006/mpev.2001.0966 10.1006/mpev.2001.0966 11476636 1:CAS:528:DC%2BD3MXlsFSns78%3D (Pubitemid 32739554)
11. M Marini B Mantovani 2002 Molecular relationships among European samples of Reticulitermes (Isoptera: Rhinotermitidae) Mol Phylogenet Evol 22 454 459 10.1006/mpev.2001.1068 10.1006/mpev.2001.1068 11884170 1:CAS:528: DC%2BD38Xhs1yktLs%3D (Pubitemid 34973434)
12. JW Austin AL Szalanski P Uva AG Bagnere's A Kence 2002 A comparative genetic analysis of the subterranean termite genus Reticulitermes (Isoptera: Rhinotermitidae) Ann Entomol Soc Am 95 753 760 10.1603/0013-8746(2002)095[0753: ACGAOT]2.0.CO;2 10.1603/0013-8746(2002)095[0753:ACGAOT]2.0.CO;2 1:CAS:528:DC%2BD3sXks1KisA%3D%3D
13. JW Austin AL Szalanski RE Gold BT Foster 2004 Genetic variation and geographical distribution of the subterranean termite genus Reticulitermes in Texas Ann Entomol Soc Am 97 575 582 10.1603/0013-8746(2004)097[0548:PAOTST]2.0. CO;2 10.1603/0013-8746(2004)097[0548:PAOTST]2.0.CO;2
14. JW Austin AL Szalanski RH Scheffrahn MT Messenger S Dronnet AG Bagnères 2005 Genetic evidence for the synonymy of two Reticulitermes species: Reticulitermes flavipes (Kollar) and Reticulitermes santonensis (Feytaud) Ann Entomol Soc Am 98 395 401 10.1603/0013-8746(2005)098[0395:GEFTSO] 2.0.CO;2 10.1603/0013-8746(2005)098[0395:GEFTSO]2.0.CO;2 1:CAS:528: DC%2BD2MXkvVWjtrw%3D
15. MM Holland TJ Parsons 1999 Mitochondrial DNA sequence analysis, validation and use for forensic casework Forensic Sci Rev 11 21 50
16. JC Avise J Arnold RM Ball E Bermingham T Lamb JE Neigel CA Reeb NC Saunders 1987 Intraspecific phylogeography: the mitochondrial DNA bridge between population genetics and systematics Annu Rev Ecol Syst 18 489 522
17. C Simon F Frati A Beckenback B Crespi H Liu P Flook 1994 Evolution, weighting, and phylogenetic utility of mitochondrial gene sequences and a compilation of conserved polymerase chain reaction primers Ann Entomol Soc Am 87 651 701 1:CAS:528:DyaK2MXis1Wiu7g%3D
18. GP Raghava RJ Solanki V Soni P Agrawal 2000 Fingerprinting method for phylogenetic classification and identification of microorganisms based on variation in 16S rRNA gene sequences Biotechniques 29 108 116 10907085 1:CAS:528:DC%2BD3cXkslOlsbw%3D
19. AL Szalanski JW Austin J Nixon 2004 Establishment of the African termite, Coptotermes sjostedti (Isoptera: Rhinotermitidae), on the Island of Guadeloupe, French West Indies Ann Entomol Soc Am 97 872 876 10.1603/0013-8746(2004) 097[0556:MPABOH]2.0.CO;2 10.1603/0013-8746(2004)097[0556:MPABOH]2.0.CO;2
20. Sambrook J, Fritsh EF, Maniatis T (1989) Molecular cloning: a laboratory manual. Cold Spring Harbour Laboratory Press, New York
21. K Yukuhiro H Sezutsu M Itoh K Shimizu Y Banno 2002 Significant levels of sequence divergence and gene rearrangements have occurred between the mitochondrial genomes of the wild mulberry silkmoth, Bombyx mandarina and its close relative, the domesticated silkmoth, Bombyx mori Mol Biol Evol 19 8 1385 1389 12140251 1:CAS:528:DC%2BD38XmtF2rs70%3D
22. FJ Vega P Iniesta T Caldes A Sanchez JA Lopez C de Juan E Diaz-Rubio A Torres JL Balibrea M Benito 1997 p53 exon 5 mutations as a prognostic indicator of shortened survival in non-small-cell lung cancer Br J Cancer 76 44 51 9218731 1:CAS:528:DyaK2sXkslahsr0%3D
23. Girman D (1996) The use of PCR-based single-stranded conformation polymorphism analysis (SSCP-PCR) in conservation genetics. In: Smith TB, Wayne RK (eds) Molecular genetic approaches in conservation. Oxford University Press, Oxford, UK, pp 167-182
24. G Ortí MP Hare JC Avise 1997 Detection and isolation of nuclear haplotypes by PCR-SSCP Mol Ecol 6 575 580 10.1046/j.1365-294X.1997.00212.x 10.1046/j.1365-294X.1997.00212.x 9200830
25. JD Thompson DG Higgins TJ Gibson 1994 CLUSTAL W: improving the sensitivity of progressive multiples sequence alignments through sequence weighting, position-specific gap penalties and weight matrix choice Nucleic Acids Res 22 4673 4680 10.1093/nar/22.22.4673 10.1093/nar/22.22.4673 7984417 1:CAS:528:DyaK2MXitlSgu74%3D
26. SF Altschul TL Madden AA Schäffer J Zhang Z Zhang W Miller DJ Lipman 1997 Gapped BLAST and PSI-BLAST: a new generation of protein database search programs Nucleic Acids Res 25 3389 3402 10.1093/nar/25.17.3389 10.1093/nar/25.17.3389 9254694 1:CAS:528:DyaK2sXlvFyhu7w%3D (Pubitemid 27359211)
27. RH Scheffrahn J Krecek AL Szalanski JW Austin 2005 Synonymy of the Neotropical arboreal termites, Nasutitermes corniger and N. costalis (Isoptera: Termitidae), with evidence from morphology, genetics, and biogeography Ann Entomol Soc Am 98 273 281 10.1603/0013-8746(2005)098[0273:SONATN]2.0.CO;2 10.1603/0013-8746(2005)098[0273:SONATN]2.0.CO;2 (Pubitemid 40707015)
28. JW Austin AL Szalanski MT Messenger JA McKern RE Gold 2006 Genetic variation and phylogenetics of Reticulitermes (Isoptera: Rhinotermitidae) from the American great plains Sociobiology 48 2 142 149
29. N Lo O Kitade T Miura R Constantino T Matsumota 2004 Molecular phylogeny of Rhinotermitidae Insectes Soc 51 365 371 10.1007/s00040-004-0759-8 10.1007/s00040-004-0759-8 (Pubitemid 40059286)
30. WC Black J Piesman 1994 Phylogeny of hard- and soft-tick taxa (Acari: Ixodida) based on mitochondrial 16S r DNA sequences Proc Natl Acad Sci USA 91 7 1034 1038
31. +-transporting ATPase: determination of altered sites of the structural gene Methods Enzymol 126 595 603 10.1016/S0076-6879(86)26062-0 10.1016/S0076-6879(86)26062-0 2908469 1:CAS:528:DyaL28Xlt1yntLw%3D
32. M Orita H Iwahana H Kanazawa K Hayashi T Sekiya 1989 Detection of polymorphisms of human DNA by gel electrophoresis as single strand conformation polymorphism Proc Natl Acad Sci USA 86 2766 2770 10.1073/pnas.86.8.2766 10.1073/pnas.86.8.2766 2565038 1:CAS:528:DyaL1MXkt1SgtL0%3D (Pubitemid 19112622)
33. M Orita Y Suzuki T Sekiya K Hayashi 1989 Rapid and sensitive detection of point mutations and DNA polymorphisms using the polymerase chain reaction Genomics 5 874 879 10.1016/0888-7543(89)90129-8 10.1016/0888-7543(89)90129-8 2687159 1:CAS:528:DyaK3cXjtFKksQ%3D%3D
34. K Hayashi DW Yandell 1993 How sensitive is PCR-SSCP? Hum Mutat 2 338 346 10.1002/humu.1380020503 10.1002/humu.1380020503 8257985 1:CAS:528: DyaK2cXis1agtr4%3D (Pubitemid 23302191)
35. MF Antolin CF Bosio J Cotton 1999 Intensive linkage mapping in a wasp (Bracon hebetor) and a mosquito (Aedes aegypti) with single-strand conformation polymorphism analysis of random amplified polymorphic DNA markers Genetics 143 1727 1738
36. A Burt DA Carter GL Koenig TJ White JW Taylor 1996 Molecular markers reveal cryptic sex in the human pathogen Coccidioides immitis Proc Natl Acad Sci USA 93 770 773 10.1073/pnas.93.2.770 10.1073/pnas.93.2.770 8570632 1:CAS:528:DyaK28XnslOktA%3D%3D (Pubitemid 26041166)
37. MJ Bagley JF Medrano GAE Gall 1997 Polymorphic molecular markers from anonymous nuclear DNA for genetic analysis of populations Mol Ecol 6 309 320 10.1046/j.1365-294X.1997.00192.x 10.1046/j.1365-294X.1997.00192.x 9131810 1:CAS:528:DyaK2sXjtVOhur8%3D
38. VL Friesen BC Congdon HE Walsh TP Birt 1997 Intron variation in marbled murrelets detected using analysis of single-stranded conformational polymorphism Mol Ecol 6 1047 1058 10.1046/j.1365-294X.1997.00277.x 10.1046/j.1365-294X.1997. 00277.x 9394463 1:CAS:528:DyaK2sXnslyktLY%3D
39. MJ Bagley GAE Gall 1998 Mitochondrial and nuclear sequence variability among populations of rainbow trout (Oncorhynchus mykiss) Mol Ecol 7 945 962 10.1046/j.1365-294x.1998.00413.x 10.1046/j.1365-294x.1998.00413.x 9711861 1:CAS:528:DyaK1cXlslGmt70%3D (Pubitemid 28371636)
40. S Jaeckel JT Epplen M Kauth 1998 Polymerase chain reaction-single strand conformation polymorphism or how to detect reliably and efficiently each sequence variation in many samples Electrophoresis 19 3055 3061 10.1002/elps.1150191802 10.1002/elps.1150191802 9932793 1:STN:280: DyaK1M7ivFGksQ%3D%3D (Pubitemid 29038397)
41. RB Gasser WG Woods C Blotkamp 1999 Screening for nucleotide variations in ribosomal DNA arrays of Oesophagostomum bifurcum by polymerase chain reaction-coupled single-strand conformation polymorphism Electrophoresis 20 1486 1491 10.1002/(SICI)1522-2683(19990601)20:7<1486::AID-ELPS1486>3.0.CO;2-9 10.1002/(SICI)1522-2683(19990601)20:7<1486::AID-ELPS1486>3.0.CO;2-9 10424472 1:CAS:528:DyaK1MXkt1Kiu7k%3D (Pubitemid 29299997)
42. BC Congdon JF Piatt K Martin VL Friesen 2000 Mechanisms of population differentiation in marbled murrelets: historical versus contemporary evolutionary processes Evolution Int J Org Evolution 54 974 986 1:STN:280:DC%2BD3cvhvFyhug%3D%3D
43. DJ Steel SA Trewick GP Wallis 2000 Heteroplasmy of mitochondrial DNA in the ophiuroid, Astrobranchion contrictum J Hered 91 146 149 10.1093/jhered/91.2. 146 10.1093/jhered/91.2.146 10768129 1:CAS:528:DC%2BD3cXitVOlt74%3D
44. SA Trewick GP Wallis M Morgan-Richards 2000 Sequence data suggest that phylogeographic pattern in the alpine scree weta (Orthoptera, Anostostomatidae) results from late Pliocene vicariance Mol Ecol 9 657 682 10.1046/j.1365-294x. 2000.00905.x 10.1046/j.1365-294x.2000.00905.x 10849282 1:STN:280: DC%2BD3czgslGjtQ%3D%3D (Pubitemid 30354641)
45. TM Jenkins RE Dean BT Forschle 2002 DNA technology, Interstate commerce, and the likely origin of Formosan subterranean termite (Isoptera: Rhinotermitidae) infestation in Atlanta, Georgia J Econ Entomol 95 381 389 10.1603/0022-0493-95.2.381 12020018 1:CAS:528:DC%2BD38XjvFWjtbs%3D
46. JW Austin AL Szalanski BJ Cabrera 2004 A phylogenetic analysis of the subterranean termite family Rhinotermitidae (Isoptera) using the mitochondrial cytochromeoxidase (COII) gene Ann Entomol Soc Am 97 548 555 10.1603/0013- 8746(2004)097[0548:PAOTST]2.0.CO;2 10.1603/0013-8746(2004)097[0548:PAOTST]2.0. CO;2 1:CAS:528:DC%2BD2cXltValtrw%3D
47. JW Austin AL Szalanski BM Kard 2004 Distribution and genetic variation of Reticulitermes (Isoptera: Rhinotermitidae) in Oklahoma Fla Entomol 87 2 152 158 10.1653/0015-4040(2004)087[0152:DAGVOR]2.0.CO;2 10.1653/0015-4040(2004) 087[0152:DAGVOR]2.0.CO;2
48. A Luchetti M Trenta B Mantovani M Marini 2004 Taxonomy and phylogeny of north Mediterranean Reticulitermes termites (Isoptera: Rhinotermitidae): a new insight Insectes Soc 51 117 122 10.1007/s00040-003-0715-z 10.1007/s00040-003- 0715-z (Pubitemid 38708641)
49. DE Davison JPEC Darlington CE Cook 2002 Molecular systematics of some Kenyan termites of the genus Odontotermes (Termitidae: Macrotermitinae) Insectes Soc 42 2 138 143
50. AL Szalanski JW Austin CB Owens 2003 Identification of Reticulitermes spp. (Isoptera: Rhinotermitidae) by polymerase chain reaction-restriction fragment length polymorphism J Econ Entomol 96 5 1514 1519 10.1603/0022-0493-96. 5.1514 14650526 1:CAS:528:DC%2BD3sXptF2qsr4%3D
51. JW Austin AL Szalanski RH Scheffrahn MT Messenger 2005 Genetic variation of Reticulitermes flavipes (Isoptera: Rhinotermitidae) in North America using the mitochondrial rRNA 16S gene Ann Entomol Soc Am 98 980 988 10.1603/0013-8746(2005)098[0980:GVORFI]2.0.CO;2 10.1603/0013-8746(2005)098[0980: GVORFI]2.0.CO;2 1:CAS:528:DC%2BD2sXpslyhs70%3D
52. SW King JW Austin AL Szalanski 2007 Use of soldier pronotal width and mitochondrial DNA sequencing to distinguish the subterranean termites, R. flavipes (kollar) and R. Virginicus (banks) Isoptera: Rhinotermitidae), on the Delmarva Peninsula: Delaware, Maryland and Virginia, USA Entomol News 118 41 48 10.3157/0013-872X(2007)118[41:UOSPWA]2.0.CO;2 10.3157/0013-872X(2007)118[41: UOSPWA]2.0.CO;2 (Pubitemid 46867351)
53. AL Szalanski JW Austin JA McKern 2008 Genetic diversity of Reticulitermes termites (Isoptera: Rhinotermitidae) from Lake Wedington, Arkansas Sociobiology 52 1 95 106
54. AL Szalanski JWJ Austin JA McKern RH Scheffrahn CB Owens MT Messenger 2008 Molecular Phylogeography of Reticulitermes (Isoptera: Rhinotermitidae) Termites from Florida Sociobiology 52 3 619 632
55. B Xiang TD Kochar 1991 Comparison of mitochondrial DNA sequences of seven morphospecies of black flies (Diptera) Genome 34 306 311
56. S Kambhampati 1995 A phylogeny of cockroaches and related insects based on DNA sequence of mitochondrial ribosomal RNA genes Proc Natl Acad Sci USA 92 2017 2020 10.1073/pnas.92.6.2017 7534409 1:CAS:528:DyaK2MXksVCqsb4%3D
57. EL Vargo C Husseneder 2009 Biology of subterranean termites: insights from molecular studies of Reticulitermes and Coptotermes Ann Rev Entomol 54 379 403 10.1146/annurev.ento.54.110807.090443 1:CAS:528:DC%2BD1MXpsFekuw%3D%3D