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Volumn 37, Issue 20, 2009, Pages 6927-6941

Off-target and a portion of target-specific siRNA mediated mRNA degradation is Ago2 'Slicer' independent and can be mediated by Ago1

Author keywords

[No Author keywords available]

Indexed keywords

ARGONAUTE 1 PROTEIN; ARGONAUTE 2 PROTEIN; MESSENGER RNA; SMALL INTERFERING RNA; EIF2C1 PROTEIN, HUMAN; EIF2C2 PROTEIN, MOUSE; INITIATION FACTOR; INITIATION FACTOR 2; PHOSPHATIDYLINOSITOL 3 KINASE; PIK3CB PROTEIN, HUMAN; RIBONUCLEASE III;

EID: 73349086270     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkp735     Document Type: Article
Times cited : (31)

References (55)
  • 1
    • 0032545933 scopus 로고    scopus 로고
    • Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans
    • Fire, A., Xu, S., Montgomery, M.K., Kostas, S.A., Driver, S.E. and Mello, C.C. (1998) Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans. Nature, 391, 806-811.
    • (1998) Nature , vol.391 , pp. 806-811
    • Fire, A.1    Xu, S.2    Montgomery, M.K.3    Kostas, S.A.4    Driver, S.E.5    Mello, C.C.6
  • 2
    • 0034737298 scopus 로고    scopus 로고
    • RNAi: double-stranded RNA directs the ATP-dependent cleavage of mRNA at 21 to 23 nucleotide intervals
    • Zamore, P.D., Tuschl, T., Sharp, P.A. and Bartel, D.P. (2000) RNAi: double-stranded RNA directs the ATP-dependent cleavage of mRNA at 21 to 23 nucleotide intervals. Cell, 101, 25-33.
    • (2000) Cell , vol.101 , pp. 25-33
    • Zamore, P.D.1    Tuschl, T.2    Sharp, P.A.3    Bartel, D.P.4
  • 3
    • 27744537851 scopus 로고    scopus 로고
    • Human RISC couples microRNA biogenesis and posttranscriptional gene silencing
    • Gregory, R.I., Chendrimada, T.P., Cooch, N. and Shiekhattar, R. (2005) Human RISC couples microRNA biogenesis and posttranscriptional gene silencing. Cell, 123, 631-640.
    • (2005) Cell , vol.123 , pp. 631-640
    • Gregory, R.I.1    Chendrimada, T.P.2    Cooch, N.3    Shiekhattar, R.4
  • 4
    • 14644393684 scopus 로고    scopus 로고
    • Perspective: machines for RNAi
    • Tomari, Y. and Zamore, P.D. (2005) Perspective: machines for RNAi. Genes Dev., 19, 517-529.
    • (2005) Genes Dev. , vol.19 , pp. 517-529
    • Tomari, Y.1    Zamore, P.D.2
  • 5
    • 27744590896 scopus 로고    scopus 로고
    • Passenger-strand cleavage facilitates assembly of siRNA into Ago2-Containing RNAi enzyme complexes
    • Matranga, C., Tomari, Y., Shin, C., Bartel, D. and Zamore, P. (2005) Passenger-strand cleavage facilitates assembly of siRNA into Ago2-Containing RNAi enzyme complexes. Cell, 123, 607-620.
    • (2005) Cell , vol.123 , pp. 607-620
    • Matranga, C.1    Tomari, Y.2    Shin, C.3    Bartel, D.4    Zamore, P.5
  • 6
    • 0035261255 scopus 로고    scopus 로고
    • Post-transcriptional gene silencing by double-stranded RNA
    • Hammond, S.M., Caudy, A.A. and Hannon, G.J. (2001) Post-transcriptional gene silencing by double-stranded RNA. Nat. Rev., 2, 110-119.
    • (2001) Nat. Rev. , vol.2 , pp. 110-119
    • Hammond, S.M.1    Caudy, A.A.2    Hannon, G.J.3
  • 7
    • 0037031576 scopus 로고    scopus 로고
    • Single-stranded antisense siRNAs guide target RNA cleavage in RNAi
    • Martinez, J., Patkaniowska, A., Urlaub, H., Lührmann, R. and Tuschl, T. (2002) Single-stranded antisense siRNAs guide target RNA cleavage in RNAi. Cell, 110, 563-574.
    • (2002) Cell , vol.110 , pp. 563-574
    • Martinez, J.1    Patkaniowska, A.2    Urlaub, H.3    Lührmann, R.4    Tuschl, T.5
  • 8
    • 3142729150 scopus 로고    scopus 로고
    • Distinct roles for Argonaute proteins in small RNA-directed RNA cleavage pathways
    • Okamura, K., Ishizuka, A., Siomi, H. and Siomi, M. (2004) Distinct roles for Argonaute proteins in small RNA-directed RNA cleavage pathways. Genes Dev., 18, 1655-1666.
    • (2004) Genes Dev. , vol.18 , pp. 1655-1666
    • Okamura, K.1    Ishizuka, A.2    Siomi, H.3    Siomi, M.4
  • 10
    • 4444302947 scopus 로고    scopus 로고
    • Crystal structure of Argonaute and its implications for RISC slicer activity
    • Song, J.-J., Smith, S.K., Hannon, G.J. and Joshua-Tor, L. (2004) Crystal structure of Argonaute and its implications for RISC slicer activity. Science, 305, 1434-1437.
    • (2004) Science , vol.305 , pp. 1434-1437
    • Song, J.-J.1    Smith, S.K.2    Hannon, G.J.3    Joshua-Tor, L.4
  • 12
    • 0347623204 scopus 로고    scopus 로고
    • Nonspecific, concentration-dependent stimulation and repression of mammalian gene expression by small interfering RNAs (siRNAs)
    • Persengiev, S.P., Zhu, X. and Green, M.R. (2004) Nonspecific, concentration-dependent stimulation and repression of mammalian gene expression by small interfering RNAs (siRNAs). RNA, 10, 12-18.
    • (2004) RNA , vol.10 , pp. 12-18
    • Persengiev, S.P.1    Zhu, X.2    Green, M.R.3
  • 13
    • 3042602447 scopus 로고    scopus 로고
    • Kinetic analysis of the RNAi enzyme complex
    • Haley, B. and Zamore, P.D. (2004) Kinetic analysis of the RNAi enzyme complex. Nat. Struct. Mol. Biol., 11, 599-606.
    • (2004) Nat. Struct. Mol. Biol. , vol.11 , pp. 599-606
    • Haley, B.1    Zamore, P.D.2
  • 15
    • 33745612464 scopus 로고    scopus 로고
    • Widespread siRNA " off-target" transcript silencing mediated by seed region sequence complementarity
    • Jackson, A.L., Burchard, J., Schelter, J., Chau, B.N., Cleary, M., Lim, L. and Linsley, P.S. (2006) Widespread siRNA " off-target" transcript silencing mediated by seed region sequence complementarity. RNA, 12, 1179-1187.
    • (2006) RNA , vol.12 , pp. 1179-1187
    • Jackson, A.L.1    Burchard, J.2    Schelter, J.3    Chau, B.N.4    Cleary, M.5    Lim, L.6    Linsley, P.S.7
  • 21
    • 38148999355 scopus 로고    scopus 로고
    • Let me count the ways: mechanisms of gene regulation by miRNAs and siRNAs
    • Wu, L. and Belasco, J.G. (2008) Let me count the ways: mechanisms of gene regulation by miRNAs and siRNAs. Mol. Cell, 29, 1-7.
    • (2008) Mol. Cell , vol.29 , pp. 1-7
    • Wu, L.1    Belasco, J.G.2
  • 22
    • 11844278458 scopus 로고    scopus 로고
    • Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are MicroRNA targets
    • Lewis, B.P., Burge, C.B. and Bartel, D.P. (2005) Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are MicroRNA targets. Cell, 120, 15-20.
    • (2005) Cell , vol.120 , pp. 15-20
    • Lewis, B.P.1    Burge, C.B.2    Bartel, D.P.3
  • 24
    • 1642374097 scopus 로고    scopus 로고
    • Specificity of microRNA target selection in translational repression
    • Doench, J.G. and Sharp, P.A. (2004) Specificity of microRNA target selection in translational repression. Genes Dev., 18, 504-511.
    • (2004) Genes Dev. , vol.18 , pp. 504-511
    • Doench, J.G.1    Sharp, P.A.2
  • 25
    • 33746055678 scopus 로고    scopus 로고
    • mRNA degradation by miRNAs and GW182 requires both CCR4:NOT deadenylase and DCP1:DCP2 decapping complexes
    • Behm-Ansmant, I., Rehwinkel, J., Doerks, T., Stark, A., Bork, P. and Izaurralde, E. (2006) mRNA degradation by miRNAs and GW182 requires both CCR4:NOT deadenylase and DCP1:DCP2 decapping complexes. Genes Dev., 20, 1885-1898.
    • (2006) Genes Dev. , vol.20 , pp. 1885-1898
    • Behm-Ansmant, I.1    Rehwinkel, J.2    Doerks, T.3    Stark, A.4    Bork, P.5    Izaurralde, E.6
  • 26
    • 33645119514 scopus 로고    scopus 로고
    • MicroRNAs direct rapid deadenylation of mRNA
    • Wu, L., Fan, J. and Belasco, J.G. (2006) MicroRNAs direct rapid deadenylation of mRNA. Proc. Natl Acad. Sci. USA, 103, 4034-4039.
    • (2006) Proc. Natl Acad. Sci. USA , vol.103 , pp. 4034-4039
    • Wu, L.1    Fan, J.2    Belasco, J.G.3
  • 28
    • 33847245910 scopus 로고    scopus 로고
    • Comparison of siRNA-induced off-target RNA and protein effects
    • Alemán, L.M., Doench, J. and Sharp, P.A. (2007) Comparison of siRNA-induced off-target RNA and protein effects. RNA, 13, 385-395.
    • (2007) RNA , vol.13 , pp. 385-395
    • Alemán, L.M.1    Doench, J.2    Sharp, P.A.3
  • 29
    • 50849117820 scopus 로고    scopus 로고
    • Importance of translation and nonnucleolytic Ago proteins for on-target RNA interference
    • Wu, L., Fan, J. and Belasco, J.G. (2008) Importance of translation and nonnucleolytic Ago proteins for on-target RNA interference. Curr. Biol., 18, 1327-1332.
    • (2008) Curr. Biol. , vol.18 , pp. 1327-1332
    • Wu, L.1    Fan, J.2    Belasco, J.G.3
  • 30
    • 0041331496 scopus 로고    scopus 로고
    • siRNA function in RNAi: a chemical modification analysis
    • Chiu, Y.-L. and Rana, T.M. (2003) siRNA function in RNAi: a chemical modification analysis. RNA, 9, 1034-1048.
    • (2003) RNA , vol.9 , pp. 1034-1048
    • Chiu, Y.-L.1    Rana, T.M.2
  • 31
    • 33644620908 scopus 로고    scopus 로고
    • Chemical modification of siRNAs to improve serum stability without loss of efficacy
    • Chounga, S., Kimb, Y.J., Kima, S., Parka, H.-O. and Choi, Y.-C. (2006) Chemical modification of siRNAs to improve serum stability without loss of efficacy. Biochem. Biophys. Res. Commun., 342, 919-927.
    • (2006) Biochem. Biophys. Res. Commun. , vol.342 , pp. 919-927
    • Chounga, S.1    Kimb, Y.J.2    Kima, S.3    Parka, H.-O.4    Choi, Y.-C.5
  • 32
    • 34848901058 scopus 로고    scopus 로고
    • Specific subcellular localization of siRNAs delivered by lipoplex in MCF-7 breast cancer cells
    • Lavigne, C. and Thierry, A.R. (2007) Specific subcellular localization of siRNAs delivered by lipoplex in MCF-7 breast cancer cells. Biochimie, 89, 1245-1251.
    • (2007) Biochimie , vol.89 , pp. 1245-1251
    • Lavigne, C.1    Thierry, A.R.2
  • 33
    • 0031010177 scopus 로고    scopus 로고
    • 2′-O-(2-methoxy)ethyl-modified anti-intercellular adhesion molecule 1 (ICAM-1) oligonucleotides selectively increase the ICAM-1 mRNA level and inhibit formation of the ICAM-1 translation initiation complex in human umbilical vein endothelial cells
    • Baker, B.F., Lot, S.S., Condon, T.P., Cheng-Flournoy, S., Lesnik, E.A., Sasmor, H.M. and Bennett, C.F. (1997) 2′-O-(2-methoxy)ethyl-modified anti-intercellular adhesion molecule 1 (ICAM-1) oligonucleotides selectively increase the ICAM-1 mRNA level and inhibit formation of the ICAM-1 translation initiation complex in human umbilical vein endothelial cells. J. Biol. Chem., 272, 11994-12000.
    • (1997) J. Biol. Chem. , vol.272 , pp. 11994-12000
    • Baker, B.F.1    Lot, S.S.2    Condon, T.P.3    Cheng-Flournoy, S.4    Lesnik, E.A.5    Sasmor, H.M.6    Bennett, C.F.7
  • 35
    • 33644847417 scopus 로고    scopus 로고
    • Modification of MyD88 mRNA splicing and inhibition of IL-1beta signaling in cell culture and in mice with a 2′-O-methoxyethyl-modified oligonucleotide
    • Vickers, T.A., Zhang, H., Graham, M.J., Lemonidis, K.M., Zhao, C. and Dean, N.M. (2006) Modification of MyD88 mRNA splicing and inhibition of IL-1beta signaling in cell culture and in mice with a 2′-O-methoxyethyl-modified oligonucleotide. J. Immunol., 176, 3652-3661.
    • (2006) J. Immunol. , vol.176 , pp. 3652-3661
    • Vickers, T.A.1    Zhang, H.2    Graham, M.J.3    Lemonidis, K.M.4    Zhao, C.5    Dean, N.M.6
  • 36
    • 0033562350 scopus 로고    scopus 로고
    • Development and validation of real-time quantitative reverse transcriptase±polymerase chain reaction for monitoring gene expression in cardiac myocytes in vitro
    • Winer, J., Kwang, C., Jung, S., Shackel, I. and Williams, P.M. (1999) Development and validation of real-time quantitative reverse transcriptase±polymerase chain reaction for monitoring gene expression in cardiac myocytes in vitro. Anal. Biochem., 270, 41-49.
    • (1999) Anal. Biochem. , vol.270 , pp. 41-49
    • Winer, J.1    Kwang, C.2    Jung, S.3    Shackel, I.4    Williams, P.M.5
  • 37
    • 0346655258 scopus 로고    scopus 로고
    • Comparison of RiboGreen and 18S rRNA quantitation for normalizing real-time RT-PCR expression analysis
    • Hashimoto, J.G., Beadles-Bohling, A.S. and Wiren, K.M. (2004) Comparison of RiboGreen and 18S rRNA quantitation for normalizing real-time RT-PCR expression analysis. BioTechniques, 36, 58-60.
    • (2004) BioTechniques , vol.36 , pp. 58-60
    • Hashimoto, J.G.1    Beadles-Bohling, A.S.2    Wiren, K.M.3
  • 38
    • 57049175013 scopus 로고    scopus 로고
    • Fast assessment of microRNA binding and siRNA off-target effects from expression data
    • Dongen, S.v., Abreu-Goodger, C. and Enright, A.J. (2008) Fast assessment of microRNA binding and siRNA off-target effects from expression data. Nat. Methods, 5, 1023-1025.
    • (2008) Nat. Methods , vol.5 , pp. 1023-1025
    • Dongen, S.v.1    Abreu-Goodger, C.2    Enright, A.J.3
  • 40
    • 15844371219 scopus 로고    scopus 로고
    • Structural basis for 5[prime]-end-specific recognition of guide RNA by the A. fulgidus Piwi protein
    • Ma, J.-B., Yuan, Y.-R., Meister, G., Pei, Y., Tuschl, T. and Patel, D.J. (2005) Structural basis for 5[prime]-end-specific recognition of guide RNA by the A. fulgidus Piwi protein. Nature, 434, 666-670.
    • (2005) Nature , vol.434 , pp. 666-670
    • Ma, J.-B.1    Yuan, Y.-R.2    Meister, G.3    Pei, Y.4    Tuschl, T.5    Patel, D.J.6
  • 43
    • 1842816517 scopus 로고    scopus 로고
    • Distinct roles for Drosophila Dicer-1 and Dicer-2 in the siRNA/miRNA silencing pathways
    • Lee, Y., Nakahara, K., Pham, J., Kim, K., He, Z., Sontheimer, E. and Carthew, R. (2004) Distinct roles for Drosophila Dicer-1 and Dicer-2 in the siRNA/miRNA silencing pathways. Cell, 117, 69-81.
    • (2004) Cell , vol.117 , pp. 69-81
    • Lee, Y.1    Nakahara, K.2    Pham, J.3    Kim, K.4    He, Z.5    Sontheimer, E.6    Carthew, R.7
  • 44
    • 22144478256 scopus 로고    scopus 로고
    • MicroRNA-dependent localization of targeted mRNAs to mammalian P-bodies
    • Liu, J., Valencia-Sanchez, M.A., Hannon, G.J. and Parker, R. (2005) MicroRNA-dependent localization of targeted mRNAs to mammalian P-bodies. Nat. Cell Biol., 7, 719-723.
    • (2005) Nat. Cell Biol. , vol.7 , pp. 719-723
    • Liu, J.1    Valencia-Sanchez, M.A.2    Hannon, G.J.3    Parker, R.4
  • 46
    • 33745894330 scopus 로고    scopus 로고
    • Translation repression in human cells by microRNA-induced gene silencing requires RCK/p54
    • Chu, C.-Y. and Rana, T.M. (2006) Translation repression in human cells by microRNA-induced gene silencing requires RCK/p54. PLoS Biol., 4, e210.
    • (2006) PLoS Biol , vol.4
    • Chu, C.-Y.1    Rana, T.M.2
  • 47
    • 22144432980 scopus 로고    scopus 로고
    • RNAi and the P-body connection
    • Rossi, J.J. (2005) RNAi and the P-body connection. Nat. Cell Biol., 7, 643-644.
    • (2005) Nat. Cell Biol. , vol.7 , pp. 643-644
    • Rossi, J.J.1
  • 49
    • 34249810892 scopus 로고    scopus 로고
    • Argonaute proteins: mediators of RNA silencing
    • Peters, L. and Meister, G. (2007) Argonaute proteins: mediators of RNA silencing. Mol. Cell, 26, 611-623.
    • (2007) Mol. Cell , vol.26 , pp. 611-623
    • Peters, L.1    Meister, G.2
  • 50
    • 35748932681 scopus 로고    scopus 로고
    • Proteomic and functional analysis of Argonaute-containing mRNA-protein complexes in human cells
    • Höck, J., Weinmann, L., Ender, C., Rüdel, S., Kremmer, E., Raabe, M., Urlaub, H. and Meister, G. (2007) Proteomic and functional analysis of Argonaute-containing mRNA-protein complexes in human cells. EMBO Rep., 8, 1052-1060.
    • (2007) EMBO Rep , vol.8 , pp. 1052-1060
    • Höck, J.1    Weinmann, L.2    Ender, C.3    Rüdel, S.4    Kremmer, E.5    Raabe, M.6    Urlaub, H.7    Meister, G.8
  • 51
    • 59949096548 scopus 로고    scopus 로고
    • Essential and overlapping functions for mammalian Argonautes in microRNA silencing
    • Su, H., Trombly, M.I., Chen, J. and Wang, X. (2009) Essential and overlapping functions for mammalian Argonautes in microRNA silencing. Genes Dev., 23, 304-317.
    • (2009) Genes Dev. , vol.23 , pp. 304-317
    • Su, H.1    Trombly, M.I.2    Chen, J.3    Wang, X.4
  • 55
    • 52949089292 scopus 로고    scopus 로고
    • The exosome: a multipurpose RNA-decay machine
    • Schmid, M. and Jensen, T.H. (2008) The exosome: a multipurpose RNA-decay machine. Trends Biochem. Sci., 33, 501-510.
    • (2008) Trends Biochem. Sci. , vol.33 , pp. 501-510
    • Schmid, M.1    Jensen, T.H.2


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