-
1
-
-
33746440612
-
Evolutionary origin of a plant mitochondrial group II intron from a reverse transcriptase/ maturase-encoding ancestor
-
Ahlert D, Piepenburg K, Kudla J, Bock R. 2006. Evolutionary origin of a plant mitochondrial group II intron from a reverse transcriptase/ maturase-encoding ancestor. J Plant Res 119: 363-371.
-
(2006)
J Plant Res
, vol.119
, pp. 363-371
-
-
Ahlert, D.1
Piepenburg, K.2
Kudla, J.3
Bock, R.4
-
2
-
-
0042768158
-
Genome-wide insertional mutagenesis of Arabidopsis thaliana
-
Alonso JM, Stepanova AN, Leisse TJ, Kim CJ, Chen H, Shinn P, Stevenson DK, Zimmerman J, Barajas P, Cheuk R, et al. 2003. Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301: 653-657.
-
(2003)
Science
, vol.301
, pp. 653-657
-
-
Alonso, J.M.1
Stepanova, A.N.2
Leisse, T.J.3
Kim, C.J.4
Chen, H.5
Shinn, P.6
Stevenson, D.K.7
Zimmerman, J.8
Barajas, P.9
Cheuk, R.10
-
3
-
-
33845674625
-
Arabidopsis orthologs of maize chloroplast splicing factors promote splicing of orthologous and speciesspecific group II introns
-
Asakura Y, Barkan A. 2006. Arabidopsis orthologs of maize chloroplast splicing factors promote splicing of orthologous and speciesspecific group II introns. Plant Physiol 142: 1656-1663.
-
(2006)
Plant Physiol
, vol.142
, pp. 1656-1663
-
-
Asakura, Y.1
Barkan, A.2
-
4
-
-
39149118562
-
A CRM domain protein functions dually in group I and group II intron splicing in land plant chloroplasts
-
Asakura Y, Barkan A. 2007. A CRM domain protein functions dually in group I and group II intron splicing in land plant chloroplasts. Plant Cell 19: 3864-3875.
-
(2007)
Plant Cell
, vol.19
, pp. 3864-3875
-
-
Asakura, Y.1
Barkan, A.2
-
5
-
-
52649163922
-
Two CRM protein subfamilies cooperate in the splicing of group IIB introns in chloroplasts
-
Asakura Y, Bayraktar OA, Barkan A. 2008. Two CRM protein subfamilies cooperate in the splicing of group IIB introns in chloroplasts. RNA 14: 2319-2332.
-
(2008)
RNA
, vol.14
, pp. 2319-2332
-
-
Asakura, Y.1
Bayraktar, O.A.2
Barkan, A.3
-
6
-
-
48949107700
-
Myosin XI-K is required for rapid trafficking of golgi stacks, peroxisomes, and mitochondria in leaf cells of Nicotiana benthamiana
-
Avisar D, Prokhnevsky AI, Makarova KS, Koonin EV, Dolja VV. 2008. Myosin XI-K is required for rapid trafficking of golgi stacks, peroxisomes, and mitochondria in leaf cells of Nicotiana benthamiana. Plant Physiol 146: 1098-1108.
-
(2008)
Plant Physiol
, vol.146
, pp. 1098-1108
-
-
Avisar, D.1
Prokhnevsky, A.I.2
Makarova, K.S.3
Koonin, E.V.4
Dolja, V.V.5
-
7
-
-
11144348652
-
Proteome analysis of tobacco Bright Yellow-2 (BY-2) cell culture plastids as a model for undifferentiated heterotrophic plastids
-
Baginsky S, Siddique A, Gruissem W. 2004. Proteome analysis of tobacco Bright Yellow-2 (BY-2) cell culture plastids as a model for undifferentiated heterotrophic plastids. J Proteome Res 3: 1128-1137.
-
(2004)
J Proteome Res
, vol.3
, pp. 1128-1137
-
-
Baginsky, S.1
Siddique, A.2
Gruissem, W.3
-
8
-
-
33847367224
-
Proteome analysis of chloroplast mRNA processing and degradation
-
Baginsky S, Grossmann J, Gruissem W. 2007. Proteome analysis of chloroplast mRNA processing and degradation. J Proteome Res 6: 809-820.
-
(2007)
J Proteome Res
, vol.6
, pp. 809-820
-
-
Baginsky, S.1
Grossmann, J.2
Gruissem, W.3
-
9
-
-
21344441799
-
Intron splicing in plant organelles
-
eds. H Daniell and C Chase, pp, Kluwer Academic, Dordrecht, The Netherlands
-
Barkan A. 2004. Intron splicing in plant organelles. In Molecular biology and biotechnology of plant organelles (eds. H Daniell and C Chase), pp 281-308. Kluwer Academic, Dordrecht, The Netherlands.
-
(2004)
Molecular biology and biotechnology of plant organelles
, pp. 281-308
-
-
Barkan, A.1
-
10
-
-
0037471698
-
Gene expression in plant mitochondria: Transcriptional and post-transcriptional control
-
Binder S, Brennicke A. 2003. Gene expression in plant mitochondria: Transcriptional and post-transcriptional control. Philos Trans R Soc Lond B Biol Sci 358: 181-188.
-
(2003)
Philos Trans R Soc Lond B Biol Sci
, vol.358
, pp. 181-188
-
-
Binder, S.1
Brennicke, A.2
-
11
-
-
11144250864
-
Domain structure and three-dimensional model of a group II intron-encoded reverse transcriptase
-
Blocker FJH, Mohr G, Conlan LH, Qi L, Belfort M, Lambowitz AM. 2005. Domain structure and three-dimensional model of a group II intron-encoded reverse transcriptase. RNA 11: 14-28.
-
(2005)
RNA
, vol.11
, pp. 14-28
-
-
Blocker, F.J.H.1
Mohr, G.2
Conlan, L.H.3
Qi, L.4
Belfort, M.5
Lambowitz, A.M.6
-
12
-
-
37249020936
-
Cis- and trans-splicing of group II introns in plant mitochondria
-
Bonen L. 2008. Cis- and trans-splicing of group II introns in plant mitochondria. Mitochondrion 8: 26-34.
-
(2008)
Mitochondrion
, vol.8
, pp. 26-34
-
-
Bonen, L.1
-
13
-
-
0035368207
-
The ins and outs of group II introns
-
Bonen L, Vogel J. 2001. The ins and outs of group II introns. Trends Genet 17: 322-331.
-
(2001)
Trends Genet
, vol.17
, pp. 322-331
-
-
Bonen, L.1
Vogel, J.2
-
14
-
-
0034013204
-
Defective splicing of the first nad4 intron is associated with lack of several complex I subunits in the Nicotiana sylvestris NMS1 nuclear mutant
-
Brangeon J, Sabar M, Gutierres S, Combettes B, Bove J, Gendy C, Chetrit P, des Francs-Small CC, Pla M, Vedel F, et al. 2000. Defective splicing of the first nad4 intron is associated with lack of several complex I subunits in the Nicotiana sylvestris NMS1 nuclear mutant. Plant J 21: 269-280.
-
(2000)
Plant J
, vol.21
, pp. 269-280
-
-
Brangeon, J.1
Sabar, M.2
Gutierres, S.3
Combettes, B.4
Bove, J.5
Gendy, C.6
Chetrit, P.7
des Francs-Small, C.C.8
Pla, M.9
Vedel, F.10
-
15
-
-
73249137160
-
Mitochondrial genome organization and expression in plants
-
Wiley, Chichester, UK
-
Brennicke A, Leaver CJ. 2007. Mitochondrial genome organization and expression in plants. In Encyclopedia of life sciences. Wiley, Chichester, UK.
-
(2007)
Encyclopedia of life sciences
-
-
Brennicke, A.1
Leaver, C.J.2
-
16
-
-
0032447801
-
Floral dip: A simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana
-
Clough SJ, Bent AF. 1998. Floral dip: A simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J 16: 735-743.
-
(1998)
Plant J
, vol.16
, pp. 735-743
-
-
Clough, S.J.1
Bent, A.F.2
-
17
-
-
0032555726
-
Retrohoming of a bacterial group II intron: Mobility via complete reverse splicing, independent of homologous DNA recombination
-
Cousineau B, Smith D, Lawrence-Cavanagh S, Mueller JE, Yang J, Mills D, Manias D, Dunny G, Lambowitz AM, Belfort M. 1998. Retrohoming of a bacterial group II intron: Mobility via complete reverse splicing, independent of homologous DNA recombination. Cell 94: 451-462.
-
(1998)
Cell
, vol.94
, pp. 451-462
-
-
Cousineau, B.1
Smith, D.2
Lawrence-Cavanagh, S.3
Mueller, J.E.4
Yang, J.5
Mills, D.6
Manias, D.7
Dunny, G.8
Lambowitz, A.M.9
Belfort, M.10
-
18
-
-
0034720157
-
Retrotransposition of a bacterial group II intron
-
Cousineau B, Lawrence S, Smith D, Belfort M. 2000. Retrotransposition of a bacterial group II intron. Nature 404: 1018-1021.
-
(2000)
Nature
, vol.404
, pp. 1018-1021
-
-
Cousineau, B.1
Lawrence, S.2
Smith, D.3
Belfort, M.4
-
19
-
-
37449010358
-
The pentatricopeptide repeat gene OTP43 is required for trans-splicing of the mitochondrial nad1 intron 1 in Arabidopsis thaliana
-
de Longevialle AF, Meyer EH, Andres C, Taylor NL, Lurin C, Millar AH, Small ID. 2007. The pentatricopeptide repeat gene OTP43 is required for trans-splicing of the mitochondrial nad1 intron 1 in Arabidopsis thaliana. Plant Cell 19: 3256-3265.
-
(2007)
Plant Cell
, vol.19
, pp. 3256-3265
-
-
de Longevialle, A.F.1
Meyer, E.H.2
Andres, C.3
Taylor, N.L.4
Lurin, C.5
Millar, A.H.6
Small, I.D.7
-
20
-
-
14644430471
-
ProbCons: Probabilistic consistency-based multiple sequence alignment
-
Do CB, Mahabhashyam MSP, Brudno M, Batzoglou S. 2005. ProbCons: Probabilistic consistency-based multiple sequence alignment. Genome Res 15: 330-340.
-
(2005)
Genome Res
, vol.15
, pp. 330-340
-
-
Do, C.B.1
Mahabhashyam, M.S.P.2
Brudno, M.3
Batzoglou, S.4
-
21
-
-
73249127817
-
-
Draper J, Scott R, Hamil J. 1988. Transformation of dicotiledonous plant cells using the Ti plasmid of A. tumefaciens and the Ri plasmid of A. rhizogenes. Blackwell Scientific, Oxford, UK.
-
Draper J, Scott R, Hamil J. 1988. Transformation of dicotiledonous plant cells using the Ti plasmid of A. tumefaciens and the Ri plasmid of A. rhizogenes. Blackwell Scientific, Oxford, UK.
-
-
-
-
22
-
-
0022121507
-
Expression of genes transferred into monocot and dicot plant cells by electroporation
-
Fromm M, Taylor LP, Walbot V. 1985. Expression of genes transferred into monocot and dicot plant cells by electroporation. Proc Natl Acad Sci 82: 5824-5828.
-
(1985)
Proc Natl Acad Sci
, vol.82
, pp. 5824-5828
-
-
Fromm, M.1
Taylor, L.P.2
Walbot, V.3
-
23
-
-
34547845666
-
Expression of the plant mitochondrial genome
-
ed. D Logan, pp, Blackwell, Ames, IA
-
Gagliardi D, Binder S. 2007. Expression of the plant mitochondrial genome. In Plant mitochondria (ed. D Logan), pp 50-95. Blackwell, Ames, IA.
-
(2007)
Plant mitochondria
, pp. 50-95
-
-
Gagliardi, D.1
Binder, S.2
-
24
-
-
57749106270
-
Complex I dysfunction redirects cellular and mitochondrial metabolism in Arabidopsis
-
Garmier M, Carroll AJ, Delannoy E, Vallet C, Day DA, Small ID, Millar AH. 2008. Complex I dysfunction redirects cellular and mitochondrial metabolism in Arabidopsis. Plant Physiol 148: 1324-1341.
-
(2008)
Plant Physiol
, vol.148
, pp. 1324-1341
-
-
Garmier, M.1
Carroll, A.J.2
Delannoy, E.3
Vallet, C.4
Day, D.A.5
Small, I.D.6
Millar, A.H.7
-
25
-
-
0027012738
-
A versatile binary vector system with a T-DNA organisational structure conducive to efficient integration of cloned DNA into the plant genome
-
Gleave AP. 1992. A versatile binary vector system with a T-DNA organisational structure conducive to efficient integration of cloned DNA into the plant genome. Plant Mol Biol 20: 1203-1207.
-
(1992)
Plant Mol Biol
, vol.20
, pp. 1203-1207
-
-
Gleave, A.P.1
-
27
-
-
12644292928
-
Lack of mitochondrial and nuclear-encoded subunits of complex I and alteration of the respiratory chain in Nicotiana sylvestris mitochondrial deletion mutants
-
Gutierres S, Sabar M, Lelandais C, Chetrit P, Diolez P, Degand H, Boutry M, Vedel F, de Kouchkovsky Y, De Paepe R. 1997. Lack of mitochondrial and nuclear-encoded subunits of complex I and alteration of the respiratory chain in Nicotiana sylvestris mitochondrial deletion mutants. Proc Natl Acad Sci 94: 3436-3441.
-
(1997)
Proc Natl Acad Sci
, vol.94
, pp. 3436-3441
-
-
Gutierres, S.1
Sabar, M.2
Lelandais, C.3
Chetrit, P.4
Diolez, P.5
Degand, H.6
Boutry, M.7
Vedel, F.8
de Kouchkovsky, Y.9
De Paepe, R.10
-
28
-
-
33644649331
-
Combining experimental and predicted datasets for determination of the subcellular location of proteins in Arabidopsis
-
Heazlewood JL, Tonti-Filippini J, Verboom RE, Millar AH. 2005. Combining experimental and predicted datasets for determination of the subcellular location of proteins in Arabidopsis. Plant Physiol 139: 598-609.
-
(2005)
Plant Physiol
, vol.139
, pp. 598-609
-
-
Heazlewood, J.L.1
Tonti-Filippini, J.2
Verboom, R.E.3
Millar, A.H.4
-
29
-
-
33846085927
-
SUBA: The Arabidopsis subcellular database
-
Heazlewood JL, Verboom RE, Tonti-Filippini J, Small I, Millar AH. 2007. SUBA: The Arabidopsis subcellular database. Nucleic Acids Res 35: 213-218.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 213-218
-
-
Heazlewood, J.L.1
Verboom, R.E.2
Tonti-Filippini, J.3
Small, I.4
Millar, A.H.5
-
30
-
-
73249126585
-
-
Hruz T, Laule O, Szabo G, Wessendorp F, Bleuler S, Oertle L, Widmayer P, Gruissem W, Zimmermann P. 2008. Genevestigator V3: A reference expression database for the meta-analysis of transcriptomes. Adv Bioinformatics. 2008: 420747-420751.
-
Hruz T, Laule O, Szabo G, Wessendorp F, Bleuler S, Oertle L, Widmayer P, Gruissem W, Zimmermann P. 2008. Genevestigator V3: A reference expression database for the meta-analysis of transcriptomes. Adv Bioinformatics. 2008: 420747-420751.
-
-
-
-
31
-
-
0035865141
-
Recruitment of a peptidyl-tRNA hydrolase as a facilitator of group II intron splicing in chloroplasts
-
Jenkins BD, Barkan A. 2001. Recruitment of a peptidyl-tRNA hydrolase as a facilitator of group II intron splicing in chloroplasts. EMBO J 20: 872-879.
-
(2001)
EMBO J
, vol.20
, pp. 872-879
-
-
Jenkins, B.D.1
Barkan, A.2
-
32
-
-
0031106356
-
Nuclear mutations that block group II RNA splicing in maize chloroplasts reveal several intron classes with distinct requirements for splicing factors
-
Jenkins BD, Kulhanek DJ, Barkan A. 1997. Nuclear mutations that block group II RNA splicing in maize chloroplasts reveal several intron classes with distinct requirements for splicing factors. Plant Cell 9: 283-296.
-
(1997)
Plant Cell
, vol.9
, pp. 283-296
-
-
Jenkins, B.D.1
Kulhanek, D.J.2
Barkan, A.3
-
33
-
-
0023664776
-
An inspection of the domain between putative TATA box and translation start site in 79 plant genes
-
Joshi CP. 1987. An inspection of the domain between putative TATA box and translation start site in 79 plant genes. Nucleic Acids Res 15: 6643-6653.
-
(1987)
Nucleic Acids Res
, vol.15
, pp. 6643-6653
-
-
Joshi, C.P.1
-
34
-
-
23144452690
-
Preparation of leaf mitochondria from Arabidopsis thaliana
-
Keech O, Dizengremel P, Gardestrom P. 2005. Preparation of leaf mitochondria from Arabidopsis thaliana. Physiol Plant 124: 403-409.
-
(2005)
Physiol Plant
, vol.124
, pp. 403-409
-
-
Keech, O.1
Dizengremel, P.2
Gardestrom, P.3
-
35
-
-
53149135852
-
Characterization of the molecular basis of group II intron RNA recognition by CRS1-CRM domains
-
Keren I, Klipcan L, Bezawork-Geleta A, Kolton M, Shaya F, Ostersetzer-Biran O. 2008. Characterization of the molecular basis of group II intron RNA recognition by CRS1-CRM domains. J Biol Chem 283: 23333-23342.
-
(2008)
J Biol Chem
, vol.283
, pp. 23333-23342
-
-
Keren, I.1
Klipcan, L.2
Bezawork-Geleta, A.3
Kolton, M.4
Shaya, F.5
Ostersetzer-Biran, O.6
-
36
-
-
34247183702
-
Proteome dynamics during plastid differentiation in rice
-
Kleffmann T, von Zychlinski A, Russenberger D, Hirsch-Hoffmann M, Gehrig P, Gruissem W, Baginsky S. 2007. Proteome dynamics during plastid differentiation in rice. Plant Physiol 143: 912-923.
-
(2007)
Plant Physiol
, vol.143
, pp. 912-923
-
-
Kleffmann, T.1
von Zychlinski, A.2
Russenberger, D.3
Hirsch-Hoffmann, M.4
Gehrig, P.5
Gruissem, W.6
Baginsky, S.7
-
37
-
-
4744343662
-
The mitochondrial DNA of land plants: Peculiarities in phylogenetic perspective
-
Knoop V. 2004. The mitochondrial DNA of land plants: Peculiarities in phylogenetic perspective. Curr Genet 46: 123-139.
-
(2004)
Curr Genet
, vol.46
, pp. 123-139
-
-
Knoop, V.1
-
38
-
-
63149143882
-
A plant-specific RNA-binding domain revealed through analysis of chloroplast group II intron splicing
-
Kroeger TS, Watkins KP, Friso G, van Wijk KJ, Barkan A. 2009. A plant-specific RNA-binding domain revealed through analysis of chloroplast group II intron splicing. Proc Natl Acad Sci 106: 4537-4542.
-
(2009)
Proc Natl Acad Sci
, vol.106
, pp. 4537-4542
-
-
Kroeger, T.S.1
Watkins, K.P.2
Friso, G.3
van Wijk, K.J.4
Barkan, A.5
-
39
-
-
0014949207
-
Cleavage of structural proteins during the assembly of the head of bacteriophage T4
-
Laemmli UK. 1970. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227: 680-685.
-
(1970)
Nature
, vol.227
, pp. 680-685
-
-
Laemmli, U.K.1
-
40
-
-
0027435638
-
Higher plant mitochondria encode an homologue of the nuclear-encoded 30-kDa subunit of bovine mitochondrial complex I
-
Lamattina L, Gonzalez D, Gualberto J, Grienenberger J-M. 1993. Higher plant mitochondria encode an homologue of the nuclear-encoded 30-kDa subunit of bovine mitochondrial complex I. Eur J Biochem 217: 831-838.
-
(1993)
Eur J Biochem
, vol.217
, pp. 831-838
-
-
Lamattina, L.1
Gonzalez, D.2
Gualberto, J.3
Grienenberger, J.-M.4
-
42
-
-
34548088457
-
Heads or tails: A simple reliability check for multiple sequence alignments
-
Landan G, Graur D. 2007. Heads or tails: A simple reliability check for multiple sequence alignments. Mol Biol Evol 24: 1380-1383.
-
(2007)
Mol Biol Evol
, vol.24
, pp. 1380-1383
-
-
Landan, G.1
Graur, D.2
-
43
-
-
33744817387
-
Multiple physical forms of excised group II intron RNAs in wheat mitochondria
-
Li-Pook-Than J, Bonen L. 2006. Multiple physical forms of excised group II intron RNAs in wheat mitochondria. Nucleic Acids Res 34: 2782-2790.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 2782-2790
-
-
Li-Pook-Than, J.1
Bonen, L.2
-
44
-
-
0002925272
-
Selection of AUG initiation codons differs in plants and animals
-
Lütcke HA, Chow KC, Mickel FS, Moss KA, Kern HF, Scheele GA. 1987. Selection of AUG initiation codons differs in plants and animals. EMBO J 6: 43-48.
-
(1987)
EMBO J
, vol.6
, pp. 43-48
-
-
Lütcke, H.A.1
Chow, K.C.2
Mickel, F.S.3
Moss, K.A.4
Kern, H.F.5
Scheele, G.A.6
-
45
-
-
53549102732
-
Photosynthetic activity during olive (Olea europaea) leaf development correlates with plastid biogenesis and Rubisco levels
-
Maayan I, Shaya F, Ratner K, Mani Y, Lavee S, Avidan B, Shahak Y, Ostersetzer-Biran O. 2008. Photosynthetic activity during olive (Olea europaea) leaf development correlates with plastid biogenesis and Rubisco levels. Physiol Plant 134: 547-558.
-
(2008)
Physiol Plant
, vol.134
, pp. 547-558
-
-
Maayan, I.1
Shaya, F.2
Ratner, K.3
Mani, Y.4
Lavee, S.5
Avidan, B.6
Shahak, Y.7
Ostersetzer-Biran, O.8
-
46
-
-
0032750542
-
Higher plant mitochondria
-
Mackenzie S, McIntosh L. 1999. Higher plant mitochondria. Plant Cell 11: 571-586.
-
(1999)
Plant Cell
, vol.11
, pp. 571-586
-
-
Mackenzie, S.1
McIntosh, L.2
-
47
-
-
0037126592
-
Mechanism of maturasepromoted group II intron splicing
-
Matsuura M, Noah JW, Lambowitz AM. 2001. Mechanism of maturasepromoted group II intron splicing. EMBO J 20: 7259-7270.
-
(2001)
EMBO J
, vol.20
, pp. 7259-7270
-
-
Matsuura, M.1
Noah, J.W.2
Lambowitz, A.M.3
-
48
-
-
27444447205
-
An intron-encoded protein assists RNA splicing of multiple similar introns of different bacterial genes
-
Meng Q, Wang Y, Liu XQ. 2005. An intron-encoded protein assists RNA splicing of multiple similar introns of different bacterial genes. J Biol Chem 280: 35085-35088.
-
(2005)
J Biol Chem
, vol.280
, pp. 35085-35088
-
-
Meng, Q.1
Wang, Y.2
Liu, X.Q.3
-
49
-
-
31544468450
-
A novel multifunctional factor involved in transsplicing of chloroplast introns in Chlamydomonas
-
Merendino L, Perron K, Rahire M, Howald I, Rochaix JD, Goldschmidt-Clermont M. 2006. A novel multifunctional factor involved in transsplicing of chloroplast introns in Chlamydomonas. Nucleic Acids Res 34: 262-274.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 262-274
-
-
Merendino, L.1
Perron, K.2
Rahire, M.3
Howald, I.4
Rochaix, J.D.5
Goldschmidt-Clermont, M.6
-
50
-
-
0024428420
-
Comparative and functional anatomy of group II catalytic introns-a review
-
Michel F, Kazuhiko U, Haruo O. 1989. Comparative and functional anatomy of group II catalytic introns-a review. Gene 82: 5-30.
-
(1989)
Gene
, vol.82
, pp. 5-30
-
-
Michel, F.1
Kazuhiko, U.2
Haruo, O.3
-
51
-
-
0037440002
-
Putative proteins related to group II intron reverse transcriptase/maturases are encoded by nuclear genes in higher plants
-
Mohr G, Lambowitz AM. 2003. Putative proteins related to group II intron reverse transcriptase/maturases are encoded by nuclear genes in higher plants. Nucleic Acids Res 31: 647-652.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 647-652
-
-
Mohr, G.1
Lambowitz, A.M.2
-
52
-
-
0027434086
-
Evolutionary relationships among group II intron-encoded proteins and identification of a conserved domain that may be related to maturase function
-
Mohr G, Perlman PS, Lambowitz AM. 1993. Evolutionary relationships among group II intron-encoded proteins and identification of a conserved domain that may be related to maturase function. Nucleic Acids Res 21: 4991-4997.
-
(1993)
Nucleic Acids Res
, vol.21
, pp. 4991-4997
-
-
Mohr, G.1
Perlman, P.S.2
Lambowitz, A.M.3
-
53
-
-
33745421529
-
A mutation in At-nMat1a, which encodes a nuclear gene having high similarity to group II intron maturase, causes impaired splicing of mitochondrial nad4 transcript and altered carbon metabolism in Arabidopsis thaliana
-
Nakagawa N, Sakurai N. 2006. A mutation in At-nMat1a, which encodes a nuclear gene having high similarity to group II intron maturase, causes impaired splicing of mitochondrial nad4 transcript and altered carbon metabolism in Arabidopsis thaliana. Plant Cell Physiol 47: 772-783.
-
(2006)
Plant Cell Physiol
, vol.47
, pp. 772-783
-
-
Nakagawa, N.1
Sakurai, N.2
-
54
-
-
25844481583
-
An in vitro RNA editing system from cauliflower mitochondria: Editing site recognition parameters can vary in different plant species
-
Neuwirt J, Takenaka M, Van Der Merwe JA, Brennicke A. 2005. An in vitro RNA editing system from cauliflower mitochondria: Editing site recognition parameters can vary in different plant species. RNA 11: 1563-1570.
-
(2005)
RNA
, vol.11
, pp. 1563-1570
-
-
Neuwirt, J.1
Takenaka, M.2
Van Der Merwe, J.A.3
Brennicke, A.4
-
55
-
-
0030614959
-
Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites
-
Nielsen H, Engelbrecht J, Brunak S, von Heijne G. 1997. Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites. Protein Eng 10: 1-6.
-
(1997)
Protein Eng
, vol.10
, pp. 1-6
-
-
Nielsen, H.1
Engelbrecht, J.2
Brunak, S.3
von Heijne, G.4
-
56
-
-
0242381359
-
2+ concentration on group II intron RNA folding investigated by UV cross-linking
-
2+ concentration on group II intron RNA folding investigated by UV cross-linking. Biochemistry 42: 12466-12480.
-
(2003)
Biochemistry
, vol.42
, pp. 12466-12480
-
-
Noah, J.W.1
Lambowitz, A.M.2
-
57
-
-
26944458557
-
CRS1, a chloroplast group II intron splicing factor, promotes intron folding through specific interactions with two intron domains
-
Ostersetzer O, Cooke AM, Watkins KP, Barkan A. 2005. CRS1, a chloroplast group II intron splicing factor, promotes intron folding through specific interactions with two intron domains. Plant Cell 17: 241-255.
-
(2005)
Plant Cell
, vol.17
, pp. 241-255
-
-
Ostersetzer, O.1
Cooke, A.M.2
Watkins, K.P.3
Barkan, A.4
-
58
-
-
0042525906
-
Group II intron splicing factors derived by diversification of an ancient RNA-binding domain
-
Ostheimer GJ, Williams-Carrier R, Belcher S, Osborne E, Gierke J, Barkan A. 2003. Group II intron splicing factors derived by diversification of an ancient RNA-binding domain. EMBO J 22: 3919-3929.
-
(2003)
EMBO J
, vol.22
, pp. 3919-3929
-
-
Ostheimer, G.J.1
Williams-Carrier, R.2
Belcher, S.3
Osborne, E.4
Gierke, J.5
Barkan, A.6
-
59
-
-
0033921125
-
Duplication and quadruplication of Arabidopsis thaliana cysteinyl- and asparaginyl-tRNA synthetase genes of organellar origin
-
Peeters NM, Chapron A, Giritch A, Grandjean O, Lancelin D, Lhomme T, Vivrel A, Small I. 2000. Duplication and quadruplication of Arabidopsis thaliana cysteinyl- and asparaginyl-tRNA synthetase genes of organellar origin. J Mol Evol 50: 413-423.
-
(2000)
J Mol Evol
, vol.50
, pp. 413-423
-
-
Peeters, N.M.1
Chapron, A.2
Giritch, A.3
Grandjean, O.4
Lancelin, D.5
Lhomme, T.6
Vivrel, A.7
Small, I.8
-
60
-
-
0034026047
-
Proteomics of the chloroplast: Systematic identification and targeting analysis of lumenal and peripheral thylakoid proteins
-
Peltier JB, Friso G, Kalume DE, Roepstorff P, Nilsson F, Adamska I, van Wijk KJ. 2000. Proteomics of the chloroplast: Systematic identification and targeting analysis of lumenal and peripheral thylakoid proteins. Plant Cell 12: 319-341.
-
(2000)
Plant Cell
, vol.12
, pp. 319-341
-
-
Peltier, J.B.1
Friso, G.2
Kalume, D.E.3
Roepstorff, P.4
Nilsson, F.5
Adamska, I.6
van Wijk, K.J.7
-
61
-
-
0036007922
-
Central functions of the lumenal and peripheral thylakoid proteome of Arabidopsis determined by experimentation and genome-wide prediction
-
Peltier JB, Emanuelsson O, Kalume DE, Ytterberg J, Friso G, Rudella A, Liberles DA, Soderberg L, Roepstorff P, von Heijne G, et al. 2002. Central functions of the lumenal and peripheral thylakoid proteome of Arabidopsis determined by experimentation and genome-wide prediction. Plant Cell 14: 211-236.
-
(2002)
Plant Cell
, vol.14
, pp. 211-236
-
-
Peltier, J.B.1
Emanuelsson, O.2
Kalume, D.E.3
Ytterberg, J.4
Friso, G.5
Rudella, A.6
Liberles, D.A.7
Soderberg, L.8
Roepstorff, P.9
von Heijne, G.10
-
62
-
-
10344242448
-
New functions of the thylakoid membrane proteome of Arabidopsis thaliana revealed by a simple, fast, and versatile fractionation strategy
-
Peltier J-B, Ytterberg AJ, Sun Q, van Wijk KJ. 2004. New functions of the thylakoid membrane proteome of Arabidopsis thaliana revealed by a simple, fast, and versatile fractionation strategy. J Biol Chem 279: 49367-49383.
-
(2004)
J Biol Chem
, vol.279
, pp. 49367-49383
-
-
Peltier, J.-B.1
Ytterberg, A.J.2
Sun, Q.3
van Wijk, K.J.4
-
63
-
-
1642488239
-
A multiprotein complex involved in chloroplast group II intron splicing
-
Perron K, Goldschmidt-Clermont M, Rochaix J-D. 2004. A multiprotein complex involved in chloroplast group II intron splicing. RNA 10: 704-711.
-
(2004)
RNA
, vol.10
, pp. 704-711
-
-
Perron, K.1
Goldschmidt-Clermont, M.2
Rochaix, J.-D.3
-
64
-
-
17444428656
-
Proteomic characterization of a tritoninsoluble fraction from chloroplasts defines a novel group of proteins associated with macromolecular structures
-
Phinney BS, Thelen JJ. 2005. Proteomic characterization of a tritoninsoluble fraction from chloroplasts defines a novel group of proteins associated with macromolecular structures. J Proteome Res 4: 497-506.
-
(2005)
J Proteome Res
, vol.4
, pp. 497-506
-
-
Phinney, B.S.1
Thelen, J.J.2
-
65
-
-
22544469721
-
Targeting the NAD7 subunit to mitochondria restores a functional complex I and a wild type phenotype in the Nicotiana sylvestris CMSII mutant lacking nad7
-
Pineau B, Mathieu C, Gerard-Hirne C, De Paepe R, Chetrit P. 2005. Targeting the NAD7 subunit to mitochondria restores a functional complex I and a wild type phenotype in the Nicotiana sylvestris CMSII mutant lacking nad7. J Biol Chem 280: 25994-26001.
-
(2005)
J Biol Chem
, vol.280
, pp. 25994-26001
-
-
Pineau, B.1
Mathieu, C.2
Gerard-Hirne, C.3
De Paepe, R.4
Chetrit, P.5
-
66
-
-
52649136147
-
A member of the Whirly family is a multifunctional RNA- and DNA-binding protein that is essential for chloroplast biogenesis
-
Prikryl J, Watkins KP, Friso G, van Wijk KJ, Barkan A. 2008. A member of the Whirly family is a multifunctional RNA- and DNA-binding protein that is essential for chloroplast biogenesis. Nucleic Acids Res 36: 5152-5165.
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 5152-5165
-
-
Prikryl, J.1
Watkins, K.P.2
Friso, G.3
van Wijk, K.J.4
Barkan, A.5
-
67
-
-
49849104172
-
Analysis of context sequence surrounding translation initiation site from complete genome of model plants
-
Rangan L, Vogel C, Srivastava A. 2008. Analysis of context sequence surrounding translation initiation site from complete genome of model plants. Mol Biotechnol 39: 207-213.
-
(2008)
Mol Biotechnol
, vol.39
, pp. 207-213
-
-
Rangan, L.1
Vogel, C.2
Srivastava, A.3
-
68
-
-
23844545533
-
Group II intron retroelements: Function and diversity
-
Robart A, Zimmerly S. 2005. Group II intron retroelements: Function and diversity. Cytogenet Genome Res 110: 589-597.
-
(2005)
Cytogenet Genome Res
, vol.110
, pp. 589-597
-
-
Robart, A.1
Zimmerly, S.2
-
69
-
-
0033748333
-
Complex I impairment, respiratory compensations, and photosynthetic decrease in nuclear and mitochondrial male sterile mutants of Nicotiana sylvestris
-
Sabar M, De Paepe R, de Kouchkovsky Y. 2000. Complex I impairment, respiratory compensations, and photosynthetic decrease in nuclear and mitochondrial male sterile mutants of Nicotiana sylvestris. Plant Physiol 124: 1239-1250.
-
(2000)
Plant Physiol
, vol.124
, pp. 1239-1250
-
-
Sabar, M.1
De Paepe, R.2
de Kouchkovsky, Y.3
-
70
-
-
33750967640
-
A pentatricopeptide repeat protein facilitates the trans-splicing of the maize chloroplast rps12 Pre-mRNA
-
Schmitz-Linneweber C, Williams-Carrier RE, Williams-Voelker PM, Kroeger TS, Vichas A, Barkan A. 2006. A pentatricopeptide repeat protein facilitates the trans-splicing of the maize chloroplast rps12 Pre-mRNA. Plant Cell 18: 2650-2663.
-
(2006)
Plant Cell
, vol.18
, pp. 2650-2663
-
-
Schmitz-Linneweber, C.1
Williams-Carrier, R.E.2
Williams-Voelker, P.M.3
Kroeger, T.S.4
Vichas, A.5
Barkan, A.6
-
71
-
-
0036307510
-
Binding of a group II intron-encoded reverse transcriptase/maturase to its high affinity intron RNA binding site involves sequence-specific recognition and autoregulates translation
-
Singh RN, Saldanha RJ, D'Souza LM, Lambowitz AM. 2002. Binding of a group II intron-encoded reverse transcriptase/maturase to its high affinity intron RNA binding site involves sequence-specific recognition and autoregulates translation. J Mol Biol 318: 287-303.
-
(2002)
J Mol Biol
, vol.318
, pp. 287-303
-
-
Singh, R.N.1
Saldanha, R.J.2
D'Souza, L.M.3
Lambowitz, A.M.4
-
72
-
-
2942589051
-
Predotar: A tool for rapidly screening proteomes for N-terminal targeting sequences
-
Small I, Peeters N, Legeai F, Lurin C. 2004. Predotar: A tool for rapidly screening proteomes for N-terminal targeting sequences. Proteomics 4: 1581-1590.
-
(2004)
Proteomics
, vol.4
, pp. 1581-1590
-
-
Small, I.1
Peeters, N.2
Legeai, F.3
Lurin, C.4
-
73
-
-
58149193219
-
PPDB, the plant proteomics database at Cornell
-
Sun Q, Zybailov B, Majeran W, Friso G, Olinares PDB, van Wijk KJ. 2009. PPDB, the plant proteomics database at Cornell. Nucleic Acids Res 37: 969-974.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 969-974
-
-
Sun, Q.1
Zybailov, B.2
Majeran, W.3
Friso, G.4
Olinares, P.D.B.5
van Wijk, K.J.6
-
74
-
-
85020032400
-
RNA editing in plant mitochondria: Assays and biochemical approaches
-
Takenaka M, Brennicke A, Jonatha MG. 2007. RNA editing in plant mitochondria: Assays and biochemical approaches. In Methods Enzymol 424: 437-439.
-
(2007)
In Methods Enzymol
, vol.424
, pp. 437-439
-
-
Takenaka, M.1
Brennicke, A.2
Jonatha, M.G.3
-
75
-
-
37249023728
-
The process of RNA editing in plant mitochondria
-
Takenaka M, Verbitskiy D, van der Merwe JA, Zehrmann A, Brennicke A. 2008. The process of RNA editing in plant mitochondria. Mitochondrion 8: 35-46.
-
(2008)
Mitochondrion
, vol.8
, pp. 35-46
-
-
Takenaka, M.1
Verbitskiy, D.2
van der Merwe, J.A.3
Zehrmann, A.4
Brennicke, A.5
-
76
-
-
0034910710
-
Coevolution of group II intron RNA structures with their intron-encoded reverse transcriptases
-
Toor N, Hausner G, Zimmerly S. 2001. Coevolution of group II intron RNA structures with their intron-encoded reverse transcriptases. RNA 7: 1142-1152.
-
(2001)
RNA
, vol.7
, pp. 1142-1152
-
-
Toor, N.1
Hausner, G.2
Zimmerly, S.3
-
77
-
-
0031021278
-
The mitochondrial genome of Arabidopsis thaliana contains 57 genes in 366,924 nucleotides
-
Unseld M, Marienfeld JR, Brandt P, Brennicke A. 1997. The mitochondrial genome of Arabidopsis thaliana contains 57 genes in 366,924 nucleotides. Nat Genet 15: 57-61.
-
(1997)
Nat Genet
, vol.15
, pp. 57-61
-
-
Unseld, M.1
Marienfeld, J.R.2
Brandt, P.3
Brennicke, A.4
-
78
-
-
37349038539
-
PPR336 is associated with polysomes in plant mitochondria
-
Uyttewaal M, Mireau H, Rurek M, Hammani K, Arnal N, Quadrado M, Giegé P. 2008. PPR336 is associated with polysomes in plant mitochondria. J Mol Biol 375: 626-636.
-
(2008)
J Mol Biol
, vol.375
, pp. 626-636
-
-
Uyttewaal, M.1
Mireau, H.2
Rurek, M.3
Hammani, K.4
Arnal, N.5
Quadrado, M.6
Giegé, P.7
-
79
-
-
33846102840
-
POGs/PlantRBP: A resource for comparative genomics in plants
-
Walker NS, Stiffler N, Barkan A. 2007. POGs/PlantRBP: A resource for comparative genomics in plants. Nucleic Acids Res 35: 852-856.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 852-856
-
-
Walker, N.S.1
Stiffler, N.2
Barkan, A.3
-
80
-
-
0033180584
-
A reverse transcriptase/maturase promotes splicing by binding at its own coding segment in a group II intron RNA
-
Wank H, SanFilippo J, Singh RN, Matsuura M, Lambowitz AM. 1999. A reverse transcriptase/maturase promotes splicing by binding at its own coding segment in a group II intron RNA. Mol Cell 4: 239-250.
-
(1999)
Mol Cell
, vol.4
, pp. 239-250
-
-
Wank, H.1
SanFilippo, J.2
Singh, R.N.3
Matsuura, M.4
Lambowitz, A.M.5
-
81
-
-
35348861922
-
A ribonuclease III domain protein functions in group II intron splicing in maize chloroplasts
-
Watkins KP, Kroeger TS, Cooke AM, Williams-Carrier RE, Friso G, Belcher SE, van Wijk KJ, Barkan A. 2007. A ribonuclease III domain protein functions in group II intron splicing in maize chloroplasts. Plant Cell 19: 2606-2623.
-
(2007)
Plant Cell
, vol.19
, pp. 2606-2623
-
-
Watkins, K.P.1
Kroeger, T.S.2
Cooke, A.M.3
Williams-Carrier, R.E.4
Friso, G.5
Belcher, S.E.6
van Wijk, K.J.7
Barkan, A.8
-
82
-
-
50649095496
-
Sequence-specific binding of a chloroplast pentatricopeptide repeat protein to its native group II intron ligand
-
Williams-Carrier R, Kroeger T, Barkan A. 2008. Sequence-specific binding of a chloroplast pentatricopeptide repeat protein to its native group II intron ligand. RNA 14: 1930-1941.
-
(2008)
RNA
, vol.14
, pp. 1930-1941
-
-
Williams-Carrier, R.1
Kroeger, T.2
Barkan, A.3
-
84
-
-
48549085095
-
Arabidopsis PPR40 connects abiotic stress responses to mitochondrial electron transport
-
Zsigmond L, Rigo G, Szarka A, Szekely G, Otvos K, Darula Z, Medzihradszky KF, Koncz C, Koncz Z, Szabados L. 2008. Arabidopsis PPR40 connects abiotic stress responses to mitochondrial electron transport. Plant Physiol 146: 1721-1737.
-
(2008)
Plant Physiol
, vol.146
, pp. 1721-1737
-
-
Zsigmond, L.1
Rigo, G.2
Szarka, A.3
Szekely, G.4
Otvos, K.5
Darula, Z.6
Medzihradszky, K.F.7
Koncz, C.8
Koncz, Z.9
Szabados, L.10
|