Modeling the evolution of culture-adapted human embryonic stem cells

Stem Cell Research

Volumn 4, Issue 1, 2010, Pages 50-56

  Olariu, Victor ^a   Harrison, Neil J ^a   Coca, Daniel ^a   Gokhale, Paul J ^a   Baker, Duncan ^b   Billings, Steve ^a   Kadirkamanathan, Visakan ^a   Andrews, Peter W ^a  

^a UNIVERSITY OF SHEFFIELD   (United Kingdom)

^b SHEFFIELD CHILDREN'S NHS FOUNDATION TRUST   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CELL POPULATION; CHROMOSOME 12; CHROMOSOME 17; CHROMOSOME ABERRATION; EMBRYONIC STEM CELL; EVOLUTION; HUMAN; HUMAN CELL; HUMAN CELL CULTURE; IN VITRO STUDY; KARYOTYPE; MONTE CARLO METHOD; MUTATION RATE; PRIORITY JOURNAL;

ADAPTATION, BIOLOGICAL; CELL DIFFERENTIATION; CELL LINE; CELL PROLIFERATION; EMBRYONIC STEM CELLS; EVOLUTION; HUMANS; MODELS, GENETIC; MONTE CARLO METHOD;

EID: 73149094719     PISSN: 18735061     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.scr.2009.09.001     Document Type: Article

References (19)

1. Baker D.E., Harrison N.J., Maltby E., Smith K., Moore H.D., Shaw P.J., Heath H., Holden P.R., and Andrews P.W. Adaptation to culture of human embryonic stem cells and oncogenesis in vivo. Nat. Biotechnol. 25 (2007) 207-215
2. Draper J.S., Smith K., Gokhale P., Moore H.D., Maltby E., Johnson J., Meisner L., Zwaka T.P., Thomson J.A., and Andrews P.W. Recurrent gain of chromosomes 17q and 12 in cultured human embryonic stem cells. Nat. Biotechnol. 22 (2004) 53-54
3. Petersson H., and Mitelman F. Nonrandom de novo chromosome aberrations in human lymphocytes and amniotic cells. Hereditas 102 (1985) 33-38
4. Holliday R. Chromosome error propagation and cancer. Trends Genet. 5 (1989) 42-45
5. Cervantes R.B., Stringer J.R., Shao C., Tischfield J.A., and Stambrook P.J. Embryonic stem cells and somatic cells differ in mutation frequency and type. Proc. Natl. Acad. Sci. USA 99 (2002) 3586-3590
6. Becker K.A., Ghule P.N., Therrien J.A., Lian J.B., Stein J.L., van Wijnen A.J., and Stein G.S. Self-renewal of human embryonic stem cells is supported by a shortened G1 cell cycle phase. J. Cell Physiol. 209 (2006) 883-893
7. Jolly C., Cook A.J., Raftery J., and Jones M.E. Measuring bidirectional mutation. J. Theor. Biol. 246 (2007) 269-277
8. Luria S.E., and Delbruck M. Mutations of bacteria from virus sensitivity to virus resistance. Genetics 28 (1943) 491-511
9. Lea D.E., and Coulson C.A. The distribution of the numbers of mutants in bacterial populations. J. Genet. 49 (1949) 264-285
10. Armitage P. The statistical theory of bacterial populations subject to mutation. J. Roy. Statist. Soc., Ser. B (Method.) 14 (1952) 1-40
11. Crump K.S., and Hoel D.G. Mathematical models for estimating mutation rates in cell populations. Biometrika 61 (1974) 237-252
12. Ma W.T., Sandri G.V., and Sarkar S. Analysis of the Luria-Delbruck distribution using discrete convolution powers. J. Appl. Probab. 29 (1992) 255-267
13. Tan W.Y. On distribution theories for the number of mutants in cell populations. SIAM J. Appl. Math. 42 (1982) 719-730
14. Amit M., Carpenter M.K., Inokuma M.S., Chiu C.P., Harris C.P., Waknitz M.A., Itskovitz-Eldor J., and Thomson J.A. Clonally derived human embryonic stem cell lines maintain pluripotency and proliferative potential for prolonged periods of culture. Dev. Biol. 227 (2000) 271-278
15. Draper J.S., Moore H.D., Ruban L.N., Gokhale P.J., and Andrews P.W. Culture and characterization of human embryonic stem cells. Stem Cells Dev. 13 (2004) 325-336
16. Mitalipova M.M., Rao R.R., Hoyer D.M., Johnson J.A., Meisner L.F., Jones K.L., Dalton S., and Stice S.L. Preserving the genetic integrity of human embryonic stem cells. Nat. Biotechnol. 23 (2005) 19-20
17. Inzunza J., Sahlen S., Holmberg K., Stromberg A.M., Teerijoki H., Blennow E., Hovatta O., and Malmgren H. Comparative genomic hybridization and karyotyping of human embryonic stem cells reveals the occurrence of an isodicentric X chromosome after long-term cultivation. Mol. Hum. Reprod. 10 (2004) 461-466
18. Maitra A., Arking D.E., Shivapurkar N., Ikeda M., Stastny V., Kassauei K., Sui G., Cutler D.J., Liu Y., Brimble S.N., Noaksson K., Hyllner J., Schulz T.C., Zeng X., Freed W.J., Crook J., Abraham S., Colman A., Sartipy P., Matsui S., Carpenter M., Gazdar A.F., Rao M., and Chakravarti A. Genomic alterations in cultured human embryonic stem cells. Nat. Genet. 37 (2005) 1099-1103
19. Buzzard J.J., Gough N.M., Crook J.M., and Colman A. Karyotype of human ES cells during extended culture. Nat. Biotechnol. 22 (2004) 381-382 author reply 382