Stable carbon isotope fractionation by acetotrophic sulfur-reducing bacteria

FEMS Microbiology Ecology

Volumn 71, Issue 2, 2010, Pages 218-225

  Goevert, Dennis ^a   Conrad, Ralf ^a  

^a MAX PLANCK INSTITUTE FOR TERRESTRIAL MICROBIOLOGY   (Germany)

Author keywords

Acetate turnover; Acetyl CoA pathway; Desulfurella; Desulfuromonas; Hippea; Tricarboxylic acid cycle

Indexed keywords

ACETATE KINASE; CARBON; PHOSPHATE ACETYLTRANSFERASE; STABLE ISOTOPE;

ACETATE; ANOXIC CONDITIONS; BIOAVAILABILITY; CARBON ISOTOPE; CARBOXYLIC ACID; DEGRADATION; ENZYME ACTIVITY; ISOTOPIC FRACTIONATION; MICROBIAL COMMUNITY; ORGANIC MATTER; STABLE ISOTOPE; SULFATE-REDUCING BACTERIUM;

ARTICLE; BIOAVAILABILITY; CITRIC ACID CYCLE; CONTROLLED STUDY; DESULFURELLA; DESULFUROMONAS THIOPHILA; FRACTIONATION; HIPPEA MARITINA; NONHUMAN; PRIORITY JOURNAL; SULFATE REDUCING BACTERIUM;

ACETATES; CARBON; CARBON ISOTOPES; CITRIC ACID CYCLE; DNA, BACTERIAL; RNA, RIBOSOMAL, 16S; SULFUR-REDUCING BACTERIA;

BACTERIA (MICROORGANISMS); DESULFURELLA; DESULFURELLA ACETIVORANS; DESULFUROMONAS; DESULFUROMONAS ACETOXIDANS; DESULFUROMONAS THIOPHILA; HIPPEA; HIPPEA MARITIMA;

EID: 72949116360     PISSN: 01686496     EISSN: 15746941     Source Type: Journal    
DOI: 10.1111/j.1574-6941.2009.00811.x     Document Type: Article

References (30)

1. Bonch-Osmolovskaya EA, Sokolova TG, Kostrikina NA Zavarzin GA (1990) Desulfurella acetivorans gen. nov. and sp. nov. - a new thermophilic sulfur-reducing eubacterium. Arch Microbiol 153 : 151 155.
2. Chin KJ, Rainey FA, Janssen PH Conrad R (1998) Methanogenic degradation of polysaccharides and the characterization of polysaccharolytic clostridia from anoxic rice field soil. Syst Appl Microbiol 21 : 185 200.
3. Conrad R (1999) Contribution of hydrogen to methane production and control of hydrogen concentrations in methanogenic soils and sediments (review). FEMS Microbiol Ecol 28 : 193 202.
4. Cord-Ruwisch R (1985) A quick method for the determination of dissolved and precipitated sulfides in cultures of sulfate-reducing bacteria. J Microbiol Meth 4 : 33 36.
5. Deines P Langmuir D (1974) Stable carbon isotope ratios and the existence of a gas phase in the evolution of carbonate ground waters. Geochim Cosmochim Ac 38 : 1147 1164.
6. Elsner M, Zwank L, Hunkeler D Schwarzenbach RP (2005) A new concept linking observable stable isotope fractionation to transformation pathways of organic pollutants (review). Environ Sci Technol 39 : 6896 6916.
7. Finster K, Coates JD, Liesack W Pfennig N (1997) Desulfuromonas thiophila sp. nov., a new obligately sulfur-reducing bacterium from anoxic freshwater sediment. Int J Syst Bacteriol 47 : 754 758.
8. Galushko AS Schink B (2000) Oxidation of acetate through reactions of the citric acid cycle by Geobacter sulfurreducens in pure culture and in syntrophic coculture. Arch Microbiol 174 : 314 321.
9. 2 with elemental sulfur in Desulfuromonas acetoxidans. Arch Microbiol 141 : 392 398.
10. Goevert D Conrad R (2008) Carbon isotope fractionation by sulfate-reducing bacteria using different pathways for the oxidation of acetate. Environ Sci Technol 42 : 7813 7817.
11. Goevert D Conrad R (2009) Effect of substrate concentration on carbon isotope fractionation during acetoclastic methanogenesis by Methanosarcina barkeri and M. acetivorans and in rice field soil. Appl Environ Microb 75 : 2605 2612.
12. 13C contents of sedimentary organic compounds: principles and evidence. Mar Geol 113 : 111 125.
13. Kampara M, Thullner M, Richnow HH, Harms H Wick LY (2008) Impact of bioavailability restrictions on microbially induced stable isotope fractionation. 2. Experimental evidence. Environ Sci Technol 42 : 6552 6558.
14. Kinnaman FS, Valentine DL Tyler SC (2007) Carbon and hydrogen isotope fractionation associated with the aerobic microbial oxidation of methane, ethane, propane and butane. Geochim Cosmochim Ac 71 : 271 283.
15. Mariotti A, Germon JC, Hubert P, Kaiser P, Letolle R, Tardieux A Tardieux P (1981) Experimental determination of nitrogen kinetic isotope fractionation: some principles; illustration for the denitrification and nitrification processes. Plant Soil 62 : 413 430.
16. Miroshnichenko ML, Rainey FA, Rhode M Bonch-Osmolovskaya EA (1999) Hippea maritima gen. nov., sp. nov., a new genus of thermophilic, sulfur-reducing bacterium from submarine hot vents. Int J Syst Bacteriol 49 : 1033 1038.
17. 2 via a citric acid cycle involving an ATP-citrate lyase: a mechanism for the synthesis of via substrate level phosphorylation in Desulfobacter postgatei growing on acetate and sulfate. Arch Microbiol 148 : 202 207.
18. Mook WG, Bommerso JC Staverma WH (1974) Carbon isotope fractionation between dissolved bicarbonate and gaseous carbon dioxide. Earth Planet Sc Lett 22 : 169 176.
19. Morasch B, Richnow HH, Schink B Meckenstock RU (2001) Stable hydrogen and carbon isotope fractionation during microbial toluene degradation: mechanistic and environmental aspects. Appl Environ Microb 67 : 4842 4849.
20. Northrop DB (1981) The expression of isotope effects on enzyme-catalyzed reactions. Annu Rev Biochem 50 : 103 131.
21. Penning H, Claus P, Casper P Conrad R (2006) Carbon isotope fractionation during acetoclastic methanogenesis by Methanosaeta concilii in culture and a lake sediment. Appl Environ Microb 72 : 5648 5652.
22. Pfennig N Biebl H (1976) Desulfuromonas acetoxidans gen. nov and sp. nov., a new anaerobic, sulfur-reducing, acetate-oxidizing bacterium. Arch Microbiol 110 : 3 12.
23. Schauder R, Widdel F Fuchs G (1987) Carbon assimilation pathways in sulfate reducing bacteria: 2. Enzymes of a reductive citric acid cycle in the autotrophic Desulfobacter hydrogenophilus. Arch. Microbiology 148 : 218 225.
24. Schmitz RA, Bonch-Osmolovskaya EA Thauer RK (1990) Different mechanisms of acetate activation in Desulfurella acetivorans and Desulforomonas acetoxidans. Arch Microbiol 154 : 274 279.
25. Soerensen J, Christensen D Joergensen BB (1981) Volatile fatty acids and hydrogen as substrates for sulfate-reducing bacteria in anaerobic marine sediment. Appl Environ Microb 42 : 5 11.
26. Stumm W Morgan JJ (1995) Aquatic Chemistry. John Wiley and Sons, New York.
27. Thauer RK (1988) Citric-acid cycle, 50 years on. Eur J Biochem 176 : 497 508.
28. Thullner M, Kampara M, Ricnow HH, Harms H Wick LY (2008) Impact of bioavailability restrictions on microbially induced stable isotope fractionation. 1. Theoretical calculation. Environ Sci Technol 42 : 6544 6551.
29. Widdel F Pfennig N (1981) Studies on dissimilatory sulfate-reducing bacteria that decompose fatty acids. 1. Isolation of new sulfate-reducing bacteria enriched with acetate from saline environments - description of Desulfobacter postgatei gen. nov., sp. nov. Arch Microbiol 129 : 395 400.
30. Wolin EA, Wolin MJ Wolfe RS (1963) Formation of methane by bacterial extracts. J Biol Chem 238 : 2882 2886.