Towards automatic extraction of social networks of organizations in pub-med abstracts

Proceedings - 2009 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2009

Volumn , Issue , 2009, Pages 279-286

  Jonnalagadda, Siddhartha ^a,b   Topham, Philip ^a   Gonzalez, Graciela ^b  

^a Lnx Research LLC   (United States)

^b ARIZONA STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AUTOMATIC EXTRACTION; BIOTECHNOLOGY INDUSTRY; CONNECTED COMPONENT; FUNDING AGENCIES; GOVERNMENT AGENCIES; LOCAL LEARNING; LOCAL SEQUENCES; RESEARCH GROUPS; RESOLVING AMBIGUITIES; SOCIAL NETWORK ANALYSIS; SOCIAL NETWORKS; TRANSLATIONAL RESEARCH;

BEHAVIORAL RESEARCH; ELECTRIC NETWORK ANALYSIS; FLUORINE CONTAINING POLYMERS; SOCIETIES AND INSTITUTIONS; TECHNICAL PRESENTATIONS;

BIOINFORMATICS;

EID: 72949087375     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/BIBMW.2009.5332108     Document Type: Conference Paper

References (31)

1. D. Katz and R. L. Kahn, The Social Psychology of Organizations. New York: John Wiley & Sons, Inc, 1966,
2. K. Weick, The Social Psychology of Organizing. Reading, MA: Addison-Wesley, 1969,
3. M. Crozier, "The relationship between micro and macro sociology," Human Relations, vol. 25, pp. 239-251, 1972.
4. R. C. Roistacher, "A review of mathematical methods in sociometry," Sociol. Methods & Res., vol. 3, pp. 123, 1974.
5. D. Knoke and S. Yang, Social Network Analysis. Sage Publications, 2008,
6. N. Chinchor and P. Robinson, "MUC-7 named entity task definition," MUC, 1997,
7. M. A. Khalid, et al., "The impact of named entity normalization on information retrieval for question answering," LCNS, 2008.
8. J. Hakenberg, et al., "Inter-species normalization of gene mentions with GNAT," Bioinformatics, 2008.
9. Y. Jin, et al., "Automated recognition of malignancy mentions in biomedical literature," BMC Bioinformatics, 2006.
10. E. A. Balas, et al., "Managing clinical knowledge for health care improvement," Yearb Med Inform. 65-70, 2000.
11. J. Surowiecki, The Wisdom of Crowds: Why the Many are Smarter than the Few and how Collective Wisdom Shapes Business, Economies, Societies and Nations. Doubleday, 2004,
12. M. A. Thomson O'Brien, et al., "Local opinion leaders: effects on professional practice and health care outcomes," Cochrane Database Syst. Rev., 2000.
13. M. Bhandari, et al., "A randomized trial of opinion leader endorsement in a survey of orthopaedic surgeons: effect on primary response rates," Int. J. Epidemiol., 2003.
14. N. A. Christakis and J. H. Fowler, "The spread of obesity in a large social network over 32 years," N. Engl. J. Med., 2007.
15. W. Yu, et al., "An automatic method to generate domain-specific investigator networks using PubMed abstracts," BMC Med. Inform. Decis. Mak., 2007.
16. S. Jonnalagadda, "Towards a generic analyzer for firewalls" Bachelors Thesis, IIT Kharagpur, pp. 36-37, 2008.
17. O. Andreasson, "Iptables Tutorial 1.2. 0," http://iptables- Tutorial.Frozentux.net/index.Html, 2005.
18. Brunstein Ada, "Annotation Guidelines For Answer Types,http://www.Ldc.Upenn.edu/Catalog/docs/LDC2005T3 3/BBN-Types-Subtypes. Html, 2002.
19. G. Inc, "Geoworldmap database containing cities of the world with geographical coordinates," 2009.
20. R. Sproat, "Normalization of non-standard words," Comp. Speech & Lang, 2001.
21. S. Hauser, et al., "Correcting OCR text by association with historical datasets," in SPIE Conference on Doc. Recog. and Retrieval, 2003.
22. A. Morgan, et al., "Overview of BioCreative II gene normalization," Genome Biol., 2008.
23. R. Barzilay and L. Lee, "Learning to paraphrase: An unsupervised approach using multiple-sequence alignment," in NAACL- HLT, 2003.
24. J. Cordeiro, et al., "Biology Based Alignments of Paraphrases for Sentence Compression," ACL, 2007.
25. S. B. Needleman and C. D. Wunsch, "A general method applicable to the search for similarities in the amino acid sequence of two proteins," J. Mol. Biol., 1970.
26. T. F. Smith and M. S. Waterman, "Identification of common molecular subsequences," J.Mol.Bwl, 1981.
27. A. S. de Carvalho Junior, "Sequence Alignment Algorithms", http://neobio.sourceforge.net/SequenceAlignment.pdf, 2003.
28. D. McClosky, E. Charniak and M. Johnson, "Reranking and self-training for parser adaptation," in Int. Conf. on Computational Linguistics 2006.
29. J. H. Friedman, "Intelligent local learning for prediction in high dimensions," in International Conference on Artificial Neural Networks, 1995,
30. V. I. Levenshtein, "Binary codes capable of correcting deletions, insertions and reversals," in Soviet Physics Doklady, 1966, pp. 707-710.
31. T. H. Cormen, et al., "Introduction to algorithms," 2001.