STIFDB arabidopsis stress responsive transcription factor dataBase

International Journal of Plant Genomics

Volumn 2009, Issue , 2009, Pages

  Sowdhamini, R ^a   Shameer, K ^a   Ambika, S ^a   Varghese, Susan Mary ^a   Karaba, N ^a   Udayakumar, M ^a  

^a UNIVERSITY OF AGRICULTURAL SCIENCES   (India)

Author keywords

[No Author keywords available]

Indexed keywords

ARABIDOPSIS; ARABIDOPSIS THALIANA;

EID: 72849137189     PISSN: 16875370     EISSN: 16875389     Source Type: Journal    
DOI: 10.1155/2009/583429     Document Type: Article

References (27)

1. Jenks M., Hasegawa P., Plant Abiotic Stress Biological Sciences Series 2005 Oxford, UK Blackwell Publishing
2. Rhee S. Y., Dickerson J., Xu D., Bioinformatics and its applications in plant biology Annual Review of Plant Biology 2006 57 335 360
3. STIFDB (Stress responsive TranscrIption Factor DataBase),. http://caps.ncbs.res.in/stifdb
4. Sundar A. S., Varghese S. M., Shameer K., Karaba N., Udayakumar M., Sowdhamini R., STIF: identification of stress-upregulated transcription factor binding sites in Arabidopsis thaliana Bioinformation 2008 2 10 431 437
5. Ashburner M., Ball C. A., Blake J. A., Creating the gene ontology resource: design and implementation Genome Research 2001 11 8 1425 1433
6. The Gene Ontology project in 2008, Nucleic Acids Research 2008 36 D440 D444
7. Ashburner M., Ball C. A., Blake J. A., Gene ontology: tool for the unification of biology Nature Genetics 2000 25 1 25 29
8. Garcia-Hernandez M., Berardini T. Z., Chen G., TAIR: a resource for integrated Arabidopsis data Functional and Integrative Genomics 2002 2 6 239 253
9. Swarbreck D., Wilks C., Lamesch P., The Arabidopsis information resource (TAIR): gene structure and function annotation Nucleic Acids Research 2008 36 D1009 D1014
10. Guo A., He K., Liu D., DATF: a database of Arabidopsis transcription factors Bioinformatics 2005 21 10 2568 2569
11. Nottingham Arabidopsis Stock Centre (NASC),. http://arabidopsis.info
12. Button D. K., Gartland K. M., Ball L. D., Natanson L., Gartland J. S., Lyon G. D., DRASTICINSIGHTS: querying information in a plant gene expression database Nucleic Acids Research 2006 34 D712 D716
13. Sakurai T., Satou M., Akiyama K., RARGE: a large-scale database of RIKEN Arabidopsis resources ranging from transcriptome to phenome Nucleic Acids Research 2005 33 D647 D650
14. Warren G. J., Cold stress: manipulating freezing tolerance in plants Current Biology 1998 8 15 R514 R516
15. Eddy S. R., Profile hidden Markov models Bioinformatics 1998 14 9 755 763
16. Validation of STIF algorithm for 29 stress responsive genes,. http://caps.ncbs.res.in/stifdb/help.html#validation
17. Mahalingam R., Gomez-Buitrago A., Eckardt N., Characterizing the stress/defense transcriptome of Arabidopsis Genome Biology 2003 4 3 R20
18. Vinocur B., Altman A., Recent advances in engineering plant tolerance to abiotic stress: achievements and limitations Current Opinion in Biotechnology 2005 16 2 123 132
19. TFmapTranscription Factor map in STIFDB,. http://caps.ncbs.res.in/stifdb/ help.html#tfmap
20. Stajich J. E., Block D., Boulez K., The Bioperl toolkit: Perl modules for the life sciences Genome Research 2002 12 10 1611 1618
21. Mulder N. J., Apweiler R., The InterPro database and tools for protein domain analysis Current Protocols in Bioinformatics 2008 chapter 2: unit 2.7
22. Bray E. A., Classification of genes differentially expressed during water-deficit stress in Arabidopsis thaliana: an analysis using microarray and differential expression data Annals of Botany 2002 89 803 811
23. Browse STIFDB using stress signals,. http://caps.ncbs.res.in/stifdb/ browse.html#se
24. Altschul S. F., Madden T. L., Schffer A. A., Gapped BLAST and PSI-BLAST: a new generation of protein database search programs Nucleic Acids Research 1997 25 17 3389 3402
25. The MySQL Database,. http://dev.mysql.com
26. Perl,. http://www.perl.org
27. Qu L.-J., Zhu Y.-X., Transcription factor families in Arabidopsis: major progress and outstanding issues for future research Current Opinion in Plant Biology 2006 9 5 544 549