-
1
-
-
0037245913
-
BIND: The Biomolecular Interaction Network Database
-
Jan 1
-
G. D. Bader, D. Betel, and C. W. Hogue, "BIND: the Biomolecular Interaction Network Database," Nucleic Acids Res, vol. 31, pp. 248-50, Jan 1 2003.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 248-250
-
-
Bader, G.D.1
Betel, D.2
Hogue, C.W.3
-
2
-
-
27244436714
-
Expansion of the BioCyc collection of pathway/genome databases to 160 genomes
-
P. D. Karp, C. A. Ouzounis, C. Moore-Kochlacs, L. Goldovsky, P. Kaipa, D. Ahren, S. Tsoka, N. Darzentas, V. Kunin, and N. Lopez-Bigas, "Expansion of the BioCyc collection of pathway/genome databases to 160 genomes," Nucleic Acids Res, vol. 33, pp. 6083-9, 2005.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 6083-6089
-
-
Karp, P.D.1
Ouzounis, C.A.2
Moore-Kochlacs, C.3
Goldovsky, L.4
Kaipa, P.5
Ahren, D.6
Tsoka, S.7
Darzentas, N.8
Kunin, V.9
Lopez-Bigas, N.10
-
4
-
-
0345863935
-
The KEGG resource for deciphering the genome
-
January 1
-
M. Kanehisa, S. Goto, S. Kawashima, Y. Okuno, and M. Hattori, "The KEGG resource for deciphering the genome," Nucl. Acids Res., vol. 32, pp. D277-280, January 1, 2004 2004.
-
(2004)
Nucl. Acids Res
, vol.32
-
-
Kanehisa, M.1
Goto, S.2
Kawashima, S.3
Okuno, Y.4
Hattori, M.5
-
5
-
-
0242490780
-
Cytoscape: A software environment for integrated models of biomolecular interaction networks
-
Nov
-
P. Shannon, A. Markiel, O. Ozier, N. S. Baliga, J. T. Wang, D. Ramage, N. Amin, B. Schwikowski, and T. Ideker, "Cytoscape: a software environment for integrated models of biomolecular interaction networks," Genome Res, vol. 13, pp. 2498-504, Nov 2003.
-
(2003)
Genome Res
, vol.13
, pp. 2498-2504
-
-
Shannon, P.1
Markiel, A.2
Ozier, O.3
Baliga, N.S.4
Wang, J.T.5
Ramage, D.6
Amin, N.7
Schwikowski, B.8
Ideker, T.9
-
6
-
-
34547586817
-
VisANT 3.0: New modules for pathway visualization, editing, prediction and construction
-
Jul
-
Z. Hu, D. M. Ng, T. Yamada, C. Chen, S. Kawashima, J. Mellor, B. Linghu, M. Kanehisa, J. M. Stuart, and C. DeLisi, "VisANT 3.0: new modules for pathway visualization, editing, prediction and construction," Nucleic Acids Res, vol. 35, pp. W625-32, Jul 2007.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Hu, Z.1
Ng, D.M.2
Yamada, T.3
Chen, C.4
Kawashima, S.5
Mellor, J.6
Linghu, B.7
Kanehisa, M.8
Stuart, J.M.9
DeLisi, C.10
-
7
-
-
35748962289
-
Tools for visually exploring biological networks
-
Oct 15
-
M. Suderman and M. Hallett, "Tools for visually exploring biological networks," Bioinformatics, vol. 23, pp. 2651-9, Oct 15 2007.
-
(2007)
Bioinformatics
, vol.23
, pp. 2651-2659
-
-
Suderman, M.1
Hallett, M.2
-
10
-
-
84998183610
-
-
Palgrave Macmillan
-
J. Yang, M. O. Ward, E. A. Rundensteiner, and A. Patro, "InterRing: a visual interface for navigating and manipulating hierarchies." vol. 2: Palgrave Macmillan, 2003, pp. 16-30.
-
(2003)
InterRing: A visual interface for navigating and manipulating hierarchies
, vol.2
, pp. 16-30
-
-
Yang, J.1
Ward, M.O.2
Rundensteiner, E.A.3
Patro, A.4
-
11
-
-
0000956767
-
Cone Trees: Animated 3D visualizations of hierarchical information
-
New Orleans, Louisiana, United States: ACM
-
G. G. Robertson, J. D. Mackinlay, and S. K. Card, "Cone Trees: animated 3D visualizations of hierarchical information," in Proceedings of the SIGCHI conference on Human factors in computing systems: Reaching through technology New Orleans, Louisiana, United States: ACM, 1991.
-
(1991)
Proceedings of the SIGCHI conference on Human factors in computing systems: Reaching through technology
-
-
Robertson, G.G.1
Mackinlay, J.D.2
Card, S.K.3
-
13
-
-
72849140830
-
-
J. Fekete, Wang, D., Overlaying Graph Links on Treemaps, in In Information Visualization 2003 Symposium Poster Compendium, IEEE, 2003, pp. 82-83.
-
J. Fekete, Wang, D., "Overlaying Graph Links on Treemaps," in In Information Visualization 2003 Symposium Poster Compendium, IEEE, 2003, pp. 82-83.
-
-
-
-
14
-
-
0346882669
-
Metabolic pathways in three dimensions
-
Dec 12
-
I. Rojdestvenski, "Metabolic pathways in three dimensions," Bioinformatics, vol. 19, pp. 2436-41, Dec 12 2003.
-
(2003)
Bioinformatics
, vol.19
, pp. 2436-2441
-
-
Rojdestvenski, I.1
-
15
-
-
24644479105
-
Integration of metabolic networks and gene expression in virtual reality
-
Sep 15
-
Y. Yang, L. Engin, E. S. Wurtele, C. Cruz-Neira, and J. A. Dickerson, "Integration of metabolic networks and gene expression in virtual reality," Bioinformatics, vol. 21, pp. 3645-50, Sep 15 2005.
-
(2005)
Bioinformatics
, vol.21
, pp. 3645-3650
-
-
Yang, Y.1
Engin, L.2
Wurtele, E.S.3
Cruz-Neira, C.4
Dickerson, J.A.5
-
16
-
-
33645620985
-
Visual Understanding of Metabolic Pathways across Organisms Using Layout in Two and a Half Dimensions
-
U. Brandes, T. Dwyer, and F. Schreiber, "Visual Understanding of Metabolic Pathways across Organisms Using Layout in Two and a Half Dimensions.," Journal of Integrative Bioinformatics, 2004.
-
(2004)
Journal of Integrative Bioinformatics
-
-
Brandes, U.1
Dwyer, T.2
Schreiber, F.3
-
17
-
-
60749103244
-
Arena3D: Visualization of biological networks in 3D
-
G. A. Pavlopoulos, S. I. O'Donoghue, V. P. Satagopam, T. G. Soldatos, E. Pafilis, and R. Schneider, "Arena3D: visualization of biological networks in 3D," BMC Syst Biol, vol. 2, p. 104, 2008.
-
(2008)
BMC Syst Biol
, vol.2
, pp. 104
-
-
Pavlopoulos, G.A.1
O'Donoghue, S.I.2
Satagopam, V.P.3
Soldatos, T.G.4
Pafilis, E.5
Schneider, R.6
-
18
-
-
60149084660
-
BioCichlid: Central dogma-based 3D visualization system of time-course microarray data on a hierarchical biological network
-
Feb 15
-
R. R. Ishiwata, M. S. Morioka, S. Ogishima, and H. Tanaka, "BioCichlid: central dogma-based 3D visualization system of time-course microarray data on a hierarchical biological network," Bioinformatics, vol. 25, pp. 543-4, Feb 15 2009.
-
(2009)
Bioinformatics
, vol.25
, pp. 543-544
-
-
Ishiwata, R.R.1
Morioka, M.S.2
Ogishima, S.3
Tanaka, H.4
-
19
-
-
51749106556
-
Visualizing Time-Dependent Data in Multivariate Hierarchic Plots -Design and Evaluation of an Economic Application
-
Columbus, OHIO, USA
-
T. Tekusova and T. Schreck, "Visualizing Time-Dependent Data in Multivariate Hierarchic Plots -Design and Evaluation of an Economic Application," in Information Visualisation, 2008. IV '08., Columbus, OHIO, USA, 2008, pp. 143-150.
-
(2008)
Information Visualisation, 2008. IV '08
, pp. 143-150
-
-
Tekusova, T.1
Schreck, T.2
-
21
-
-
58149179979
-
EcoCyc: A comprehensive view of Escherichia coli biology
-
Jan
-
I. M. Keseler, C. Bonavides-Martinez, J. Collado-Vides, S. Gama-Castro, R. P. Gunsalus, D. A. Johnson, M. Krummenacker, L. M. Nolan, S. Paley, I. T. Paulsen, M. Peralta-Gil, A. Santos-Zavaleta, A. G. Shearer, and P. D. Karp, "EcoCyc: a comprehensive view of Escherichia coli biology," Nucleic Acids Res, vol. 37, pp. D464-70, Jan 2009.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Keseler, I.M.1
Bonavides-Martinez, C.2
Collado-Vides, J.3
Gama-Castro, S.4
Gunsalus, R.P.5
Johnson, D.A.6
Krummenacker, M.7
Nolan, L.M.8
Paley, S.9
Paulsen, I.T.10
Peralta-Gil, M.11
Santos-Zavaleta, A.12
Shearer, A.G.13
Karp, P.D.14
-
22
-
-
33845576184
-
Graphviz and dynagraph static and dynamic graph drawing tools,
-
Technical report, AT&T Labs, Research
-
J. Ellson, E. R. Gansner, and E. Koutsofios, "Graphviz and dynagraph static and dynamic graph drawing tools," Technical report, AT&T Labs - Research 2003.
-
(2003)
-
-
Ellson, J.1
Gansner, E.R.2
Koutsofios, E.3
-
23
-
-
34548595489
-
OBO-Edit--an ontology editor for biologists
-
Aug 15
-
J. Day-Richter, M. A. Harris, M. Haendel, and S. Lewis, "OBO-Edit--an ontology editor for biologists," Bioinformatics, vol. 23, pp. 2198-200, Aug 15 2007.
-
(2007)
Bioinformatics
, vol.23
, pp. 2198-2200
-
-
Day-Richter, J.1
Harris, M.A.2
Haendel, M.3
Lewis, S.4
-
24
-
-
38549134505
-
Many Microbe Microarrays Database: Uniformly normalized Affymetrix compendia with structured experimental metadata
-
Jan
-
J. J. Faith, M. E. Driscoll, V. A. Fusaro, E. J. Cosgrove, B. Hayete, F. S. Juhn, S. J. Schneider, and T. S. Gardner, "Many Microbe Microarrays Database: uniformly normalized Affymetrix compendia with structured experimental metadata," Nucleic Acids Res, vol. 36, pp. D866-70, Jan 2008.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Faith, J.J.1
Driscoll, M.E.2
Fusaro, V.A.3
Cosgrove, E.J.4
Hayete, B.5
Juhn, F.S.6
Schneider, S.J.7
Gardner, T.S.8
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