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Volumn 6, Issue , 2009, Pages

Comparative analysis of panicum streak virus and maize streak virus diversity, recombination patterns and phylogeography

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; GEMINIVIRUS; GENE SEQUENCE; MAIZE STREAK VIRUS; NUCLEOTIDE SEQUENCE; PANICUM STREAK VIRUS; PHYLOGEOGRAPHY; PLANT DISEASE; SPECIES DIVERSITY; VIRUS RECOMBINATION; AFRICA; CHEMISTRY; CLUSTER ANALYSIS; DNA SEQUENCE; GENETIC RECOMBINATION; GENETIC VARIABILITY; GENETICS; GEOGRAPHY; INDIAN OCEAN; ISOLATION AND PURIFICATION; MAIZE; MILLET; MOLECULAR GENETICS; PHYLOGENY; SEQUENCE HOMOLOGY; VIROLOGY; VIRUS GENOME;

EID: 72849108570     PISSN: None     EISSN: 1743422X     Source Type: Journal    
DOI: 10.1186/1743-422X-6-194     Document Type: Article
Times cited : (26)

References (56)
  • 2
    • 0033370276 scopus 로고    scopus 로고
    • Nucleotide sequence evidence for three distinct sugarcane streak mastreviruses
    • 10.1007/s007050050647. 10664387
    • Nucleotide sequence evidence for three distinct sugarcane streak mastreviruses. L Bigarré M Salah M Granier R Frutos JC Thouvenel M Peterschmitt, Arch Virol 1999 144 2331 2344 10.1007/s007050050647 10664387
    • (1999) Arch Virol , vol.144 , pp. 2331-2344
    • Bigarré, L.1    Salah, M.2    Granier, M.3    Frutos, R.4    Thouvenel, J.C.5    Peterschmitt, M.6
  • 3
    • 0026534749 scopus 로고
    • The nucleotide sequence of an infectious insect-transmissible clone of the geminivirus Panicum streak virus
    • 10.1099/0022-1317-73-5-1041. 1588314
    • The nucleotide sequence of an infectious insect-transmissible clone of the geminivirus Panicum streak virus. RW Briddon P Lunness LC Chamberlin MS Pinner H Brundish PG Markham, J Gen Virol 1992 73 1041 1047 10.1099/0022-1317- 73-5-1041 1588314
    • (1992) J Gen Virol , vol.73 , pp. 1041-1047
    • Briddon, R.W.1    Lunness, P.2    Chamberlin, L.C.3    Pinner, M.S.4    Brundish, H.5    Markham, P.G.6
  • 4
    • 0027357699 scopus 로고
    • Complete nucleotide sequence of sugarcane streak Monogeminivirus
    • 10.1007/BF01309851. 8352656
    • Complete nucleotide sequence of sugarcane streak Monogeminivirus. FL Hughes EP Rybicki R Kirby, Arch Virol 1993 132 171 182 10.1007/BF01309851 8352656
    • (1993) Arch Virol , vol.132 , pp. 171-182
    • Hughes, F.L.1    Rybicki, E.P.2    Kirby, R.3
  • 5
    • 84985467707 scopus 로고
    • Characterization of maize streak virus:description of strains; Symptoms
    • 10.1111/j.1365-3059.1988.tb02198.x
    • Characterization of maize streak virus:description of strains; symptoms. MS Pinner PG Markham RH Markham EL Dekker, Plant Path 1988 37 74 87 10.1111/j.1365-3059.1988.tb02198.x
    • (1988) Plant Path , vol.37 , pp. 74-87
    • Pinner, M.S.1    Markham, P.G.2    Markham, R.H.3    Dekker, E.L.4
  • 6
    • 0002894778 scopus 로고
    • Characterization of maize streak virus isolates using monoclonal and polyclonal antibodies and by transmission to a few hosts
    • Characterization of maize streak virus isolates using monoclonal and polyclonal antibodies and by transmission to a few hosts. M Peterschmitt B Reynaud G Sommermeyer P Baudin, Plant Dis 1991 75 27 32
    • (1991) Plant Dis , vol.75 , pp. 27-32
    • Peterschmitt, M.1    Reynaud, B.2    Sommermeyer, G.3    Baudin, P.4
  • 7
    • 0000221478 scopus 로고
    • The transmission of streak disease between maize, sugarcane and wild grasses
    • 10.1111/j.1744-7348.1930.tb07240.x
    • The transmission of streak disease between maize, sugarcane and wild grasses. HH Storey APD McClean, Ann Appl Biol 1930 17 691 719 10.1111/j.1744-7348.1930.tb07240.x
    • (1930) Ann Appl Biol , vol.17 , pp. 691-719
    • Storey, H.H.1    McClean, A.P.D.2
  • 8
    • 39749123272 scopus 로고    scopus 로고
    • Novel Sugarcane streak virus and Sugarcane streak Reunion virus mastrevirus isolates from Southern Africa and la Reunion
    • 10.1007/s00705-007-0016-3. 18175043
    • Novel Sugarcane streak virus and Sugarcane streak Reunion virus mastrevirus isolates from Southern Africa and La Reunion. DN Shepherd A Varsani O Windram P Lefeuvre AL Monjane B Owor DP Martin, Arch Virol 2008 153 605 609 10.1007/s00705-007-0016-3 18175043
    • (2008) Arch Virol , vol.153 , pp. 605-609
    • Shepherd, D.N.1    Varsani, A.2    Windram, O.3    Lefeuvre, P.4    Monjane, A.L.5    Owor, B.6    Martin, D.P.7
  • 9
    • 70350380851 scopus 로고    scopus 로고
    • A novel sugarcane-infecting mastrevirus species from South Africa
    • 10.1007/s00705-009-0490-x
    • A novel sugarcane-infecting mastrevirus species from South Africa. R Lawry DP Martin DN Shepherd T van Antwerpen A Varsani, Arch Virol 2009 154 1699 1703 10.1007/s00705-009-0490-x
    • (2009) Arch Virol , vol.154 , pp. 1699-1703
    • Lawry, R.1    Martin, D.P.2    Shepherd, D.N.3    Van Antwerpen, T.4    Varsani, A.5
  • 15
    • 62749122244 scopus 로고    scopus 로고
    • Widely conserved recombination patterns among single-stranded DNA viruses
    • 19116260. 10.1128/JVI.02152-08
    • Widely conserved recombination patterns among single-stranded DNA viruses. P Lefeuvre JM Lett A Varsani DP Martin, J Virol 2009 83 2697 2707 19116260 10.1128/JVI.02152-08
    • (2009) J Virol , vol.83 , pp. 2697-2707
    • Lefeuvre, P.1    Lett, J.M.2    Varsani, A.3    Martin, D.P.4
  • 16
    • 0033590220 scopus 로고    scopus 로고
    • Possible emergence of new geminiviruses by frequent recombination
    • 10.1006/viro.1999.0056. 10600594
    • Possible emergence of new geminiviruses by frequent recombination. M Padidam S Sawyer CM Fauquet, Virology 1999 265 218 225 10.1006/viro.1999.0056 10600594
    • (1999) Virology , vol.265 , pp. 218-225
    • Padidam, M.1    Sawyer, S.2    Fauquet, C.M.3
  • 17
    • 0033971648 scopus 로고    scopus 로고
    • Evidence of synergism between African cassava mosaic virus and a new double-recombinant geminivirus infecting cassava in Cameroon
    • 10640569
    • Evidence of synergism between African cassava mosaic virus and a new double-recombinant geminivirus infecting cassava in Cameroon. VN Fondong JS Pita ME Rey A de Kochko RN Beachy CM Fauquet, J Gen Virol 2000 81 287 297 10640569
    • (2000) J Gen Virol , vol.81 , pp. 287-297
    • Fondong, V.N.1    Pita, J.S.2    Rey, M.E.3    De Kochko, A.4    Beachy, R.N.5    Fauquet, C.M.6
  • 18
    • 0035115583 scopus 로고    scopus 로고
    • Recombination, pseudorecombination and synergism of geminiviruses are determinant keys to the epidemic of severe cassava mosaic disease in Uganda
    • 11172108
    • Recombination, pseudorecombination and synergism of geminiviruses are determinant keys to the epidemic of severe cassava mosaic disease in Uganda. JS Pita VN Fondong A Sangaré GW Otim-Nape S Ogwal CM Fauquet, J Gen Virol 2001 82 655 665 11172108
    • (2001) J Gen Virol , vol.82 , pp. 655-665
    • Pita, J.S.1    Fondong, V.N.2    Sangaré, A.3    Otim-Nape, G.W.4    Ogwal, S.5    Fauquet, C.M.6
  • 19
    • 0036938933 scopus 로고    scopus 로고
    • A natural recombinant between the geminiviruses Tomato yellow leaf curl Sardinia virus and Tomato yellow leaf curl virus exhibits a novel pathogenic phenotype and is becoming prevalent in Spanish populations
    • 10.1006/viro.2002.1633. 12490393
    • A natural recombinant between the geminiviruses Tomato yellow leaf curl Sardinia virus and Tomato yellow leaf curl virus exhibits a novel pathogenic phenotype and is becoming prevalent in Spanish populations. F Monci S Snchez-Campos J Navas-Castillo E Moriones, Virology 2002 303 317 326 10.1006/viro.2002.1633 12490393
    • (2002) Virology , vol.303 , pp. 317-326
    • Monci, F.1    Snchez-Campos, S.2    Navas-Castillo, J.3    Moriones, E.4
  • 20
    • 34250175133 scopus 로고    scopus 로고
    • Frequent occurrence of recombinants in mixed infections of tomato yellow leaf curl disease-associated begomoviruses
    • 10.1016/j.virol.2007.03.045. 17467025
    • Frequent occurrence of recombinants in mixed infections of tomato yellow leaf curl disease-associated begomoviruses. S García-Andrés DM Tomas S Sanchez-Campos J Navas-Castillo E Moriones, Virology 2007 365 210 219 10.1016/j.virol.2007.03.045 17467025
    • (2007) Virology , vol.365 , pp. 210-219
    • García-Andrés, S.1    Tomas, D.M.2    Sanchez-Campos, S.3    Navas-Castillo, J.4    Moriones, E.5
  • 21
    • 33847014211 scopus 로고    scopus 로고
    • Founder effect, plant host, and recombination shape the emergent population of begomoviruses that cause the tomato yellow leaf curl disease in the Mediterranean basin
    • 10.1016/j.virol.2006.09.030. 17070885
    • Founder effect, plant host, and recombination shape the emergent population of begomoviruses that cause the tomato yellow leaf curl disease in the Mediterranean basin. S García-Andrés GP Accotto J Navas-Castillo E Moriones, Virology 2007 359 302 312 10.1016/j.virol.2006.09.030 17070885
    • (2007) Virology , vol.359 , pp. 302-312
    • García-Andrés, S.1    Accotto, G.P.2    Navas-Castillo, J.3    Moriones, E.4
  • 24
    • 13444251528 scopus 로고    scopus 로고
    • RDP2: Recombination detection and analysis from sequence alignments
    • 10.1093/bioinformatics/bth490. 15377507
    • RDP2: recombination detection and analysis from sequence alignments. DP Martin C Williamson D Posada, Bioinformatics 2005 21 260 262 10.1093/bioinformatics/bth490 15377507
    • (2005) Bioinformatics , vol.21 , pp. 260-262
    • Martin, D.P.1    Williamson, C.2    Posada, D.3
  • 25
    • 33846507059 scopus 로고    scopus 로고
    • Constraints to genetic exchange support gene coadaptation in a tripartite RNA virus
    • DOI 10.1371/journal.ppat.0030008
    • Constraints to genetic exchange support gene coadaptation in a tripartite RNA virus. F Escriu A Fraile F García-Arenal, PLoS Pathog 2007 3 8 17257060 10.1371/journal.ppat.0030008 (Pubitemid 46168847)
    • (2007) PLoS Pathogens , vol.3 , Issue.1 , pp. 0067-0074
    • Escriu, F.1    Fraile, A.2    Garcia-Arenal, F.3
  • 26
    • 37349086780 scopus 로고    scopus 로고
    • Avoidance of protein fold disruption in natural virus recombinants
    • DOI 10.1371/journal.ppat.0030181
    • Avoidance of protein fold disruption in natural virus recombinants. P Lefeuvre JM Lett B Reynaud DP Martin, PLoS Pathog 2007 3 181 18052529 10.1371/journal.ppat.0030181 (Pubitemid 350291612)
    • (2007) PLoS Pathogens , vol.3 , Issue.11 , pp. 1782-1789
    • Lefeuvre, P.1    Lett, J.-M.2    Reynaud, B.3    Martin, D.P.4
  • 27
    • 33747626399 scopus 로고    scopus 로고
    • The evolutionary value of recombination is constrained by genome modularity
    • 16244707. 10.1371/journal.pgen.0010051
    • The evolutionary value of recombination is constrained by genome modularity. DP Martin E van der Walt D Posada EP Rybicki, PLoS Genet 2005 1 51 16244707 10.1371/journal.pgen.0010051
    • (2005) PLoS Genet , vol.1 , pp. 551
    • Martin, D.P.1    Der Van, W.E.2    Posada, D.3    Rybicki, E.P.4
  • 28
    • 1242342116 scopus 로고    scopus 로고
    • Variability and genetic structure of the population of watermelon mosaic virus infecting melon in Spain
    • 10.1016/j.virol.2003.10.002. 14972570
    • Variability and genetic structure of the population of watermelon mosaic virus infecting melon in Spain. IM Moreno JM Malpica JA Diaz-Pendon E Moriones A Fraile F García-Arenal, Virology 2004 318 451 460 10.1016/j.virol.2003. 10.002 14972570
    • (2004) Virology , vol.318 , pp. 451-460
    • Moreno, I.M.1    Malpica, J.M.2    Diaz-Pendon, J.A.3    Moriones, E.4    Fraile, A.5    García-Arenal, F.6
  • 29
    • 0036392284 scopus 로고    scopus 로고
    • Investigation of Maize streak virus pathogenicity determinants using chimaeric genomes
    • 10.1006/viro.2002.1458. 12350349
    • Investigation of Maize streak virus pathogenicity determinants using chimaeric genomes. DP Martin EP Rybicki, Virology 2002 300 180 188 10.1006/viro.2002.1458 12350349
    • (2002) Virology , vol.300 , pp. 180-188
    • Martin, D.P.1    Rybicki, E.P.2
  • 30
    • 45249113964 scopus 로고    scopus 로고
    • Viable chimaeric viruses confirm the biological importance of sequence specific maize streak virus movement protein and coat protein interactions
    • DOI 10.1186/1743-422X-5-61
    • Viable chimaeric viruses confirm the biological importance of sequence specific maize streak virus movement protein and coat protein interactions. E van der Walt K Palmer DP Martin EP Rybicki, Virol J 2008 5 61 18489800 10.1186/1743-422X-5-61 (Pubitemid 351842202)
    • (2008) Virology Journal , vol.5 , pp. 61
    • Van Der Walt, E.1    Palmer, K.E.2    Martin, D.P.3    Rybicki, E.P.4
  • 32
    • 36749074393 scopus 로고    scopus 로고
    • Begomovirus 'melting pot' in the south-west Indian Ocean islands: Molecular diversity and evolution through recombination
    • 10.1099/vir.0.83252-0. 18024917
    • Begomovirus 'melting pot' in the south-west Indian Ocean islands: molecular diversity and evolution through recombination. P Lefeuvre DP Martin M Hoareau F Naze H Delatte M Thierry A Varsani N Becker B Reynaud JM Lett, J Gen Virol 2007 88 3458 3468 10.1099/vir.0.83252-0 18024917
    • (2007) J Gen Virol , vol.88 , pp. 3458-3468
    • Lefeuvre, P.1    Martin, D.P.2    Hoareau, M.3    Naze, F.4    Delatte, H.5    Thierry, M.6    Varsani, A.7    Becker, N.8    Reynaud, B.9    Lett, J.M.10
  • 33
    • 18144380966 scopus 로고    scopus 로고
    • South West Indian Ocean islands tomato begomovirus populations represent a new major monopartite begomovirus group
    • 10.1099/vir.0.80805-0. 15831967
    • South West Indian Ocean islands tomato begomovirus populations represent a new major monopartite begomovirus group. H Delatte DP Martin F Naze R Goldbach B Reynaud M Peterschmitt JM Lett, J Gen Virol 2005 86 1533 1542 10.1099/vir.0.80805-0 15831967
    • (2005) J Gen Virol , vol.86 , pp. 1533-1542
    • Delatte, H.1    Martin, D.P.2    Naze, F.3    Goldbach, R.4    Reynaud, B.5    Peterschmitt, M.6    Lett, J.M.7
  • 34
    • 19444372534 scopus 로고    scopus 로고
    • Molecular biodiversity of cassava begomoviruses in Tanzania: Evolution of cassava geminiviruses in Africa and evidence for East Africa being a center of diversity of cassava geminiviruses
    • DOI 10.1186/1743-422X-2-21
    • Molecular biodiversity of cassava begomoviruses in Tanzania: evolution of cassava geminiviruses in Africa and evidence for East Africa being a center of diversity of cassava geminiviruses. J Ndunguru JP Legg TA Aveling G Thompson CM Fauquet, Virol J 2005 2 21 15784145 10.1186/1743-422X-2-21 (Pubitemid 40727399)
    • (2005) Virology Journal , vol.2 , pp. 21
    • Ndunguru, J.1    Legg, J.P.2    Aveling, T.A.S.3    Thompson, G.4    Fauquet, C.M.5
  • 35
    • 0029822045 scopus 로고    scopus 로고
    • Infectivity and complete nucleotide sequence of the genome of a genetically distinct strain of maize streak virus from Réunion Island
    • 10.1007/BF01718288. 8893787
    • Infectivity and complete nucleotide sequence of the genome of a genetically distinct strain of maize streak virus from Réunion Island. M Peterschmitt M Granier R Frutos B Reynaud, Arch Virol 1996 141 1637 1650 10.1007/BF01718288 8893787
    • (1996) Arch Virol , vol.141 , pp. 1637-1650
    • Peterschmitt, M.1    Granier, M.2    Frutos, R.3    Reynaud, B.4
  • 36
    • 12544255069 scopus 로고    scopus 로고
    • Cassava mosaic geminiviruses in Africa
    • 10.1007/s11103-004-1651-7. 15630622
    • Cassava mosaic geminiviruses in Africa. JP Legg CM Fauquet, Plant Mol Biol 2004 56 585 599 10.1007/s11103-004-1651-7 15630622
    • (2004) Plant Mol Biol , vol.56 , pp. 585-599
    • Legg, J.P.1    Fauquet, C.M.2
  • 37
    • 63749117902 scopus 로고    scopus 로고
    • A reassessment of the epidemiology of Rice yellow mottle virus following recent advances in field and molecular studies
    • 10.1016/j.virusres.2009.01.011. 19195488
    • A reassessment of the epidemiology of Rice yellow mottle virus following recent advances in field and molecular studies. O Traoré A Pinel-Galzi F Sorho S Sarra M Rakotomalala E Sangu Z Kanyeka Y Séré G Konaté D Fargette, Virus Res 2009 141 258 267 10.1016/j.virusres.2009.01. 011 19195488
    • (2009) Virus Res , vol.141 , pp. 258-267
    • Traoré, O.1    Pinel-Galzi, A.2    Sorho, F.3    Sarra, S.4    Rakotomalala, M.5    Sangu, E.6    Kanyeka, Z.7    Séré, Y.8    Konaté, G.9    Fargette, D.10
  • 38
    • 20144368499 scopus 로고    scopus 로고
    • Processes of diversification and dispersion of rice yellow mottle virus inferred from large-scale and high-resolution phylogeographical studies
    • 10.1111/j.1365-294X.2005.02578.x. 15910330
    • Processes of diversification and dispersion of rice yellow mottle virus inferred from large-scale and high-resolution phylogeographical studies. O Traore F Sorho A Pinel Z Abubakar O Banwo J Maley E Hebrard S Winter Y Sere G Konate D Fargette, Mol Ecol 2005 14 2097 2110 10.1111/j.1365-294X.2005.02578.x 15910330
    • (2005) Mol Ecol , vol.14 , pp. 2097-2110
    • Traore, O.1    Sorho, F.2    Pinel, A.3    Abubakar, Z.4    Banwo, O.5    Maley, J.6    Hebrard, E.7    Winter, S.8    Sere, Y.9    Konate, G.10    Fargette, D.11
  • 40
    • 34547991103 scopus 로고    scopus 로고
    • Comparison of transmission abilities of four Cicadulina species vectors of maize streak virus from Nigeria
    • DOI 10.1111/j.1570-7458.2007.00577.x
    • Comparison of transmission abilities of four Cicadulina species vectors of maize streak virus from Nigeria. S Oluwafemi LE Jackai MD Alegbejo, Ent Exp Et App 2007 124 235 239 10.1111/j.1570-7458.2007.00577.x (Pubitemid 47274478)
    • (2007) Entomologia Experimentalis et Applicata , vol.124 , Issue.3 , pp. 235-239
    • Oluwafemi, S.1    Jackai, L.E.N.2    Alegbejo, M.D.3
  • 41
    • 0025004170 scopus 로고
    • Serotyping and strain identification of maize streak virus isolates
    • 10.1099/0022-1317-71-8-1635. 1697327
    • Serotyping and strain identification of maize streak virus isolates. MS Pinner PG Markham, J Gen Virol 1990 71 1635 1640 10.1099/0022-1317-71-8-1635 1697327
    • (1990) J Gen Virol , vol.71 , pp. 1635-1640
    • Pinner, M.S.1    Markham, P.G.2
  • 42
    • 1642523843 scopus 로고    scopus 로고
    • A simple method for cloning the complete begomovirus genome using the bacteriophage phi29 DNA polymerase
    • 10.1016/j.jviromet.2003.11.015. 14738990
    • A simple method for cloning the complete begomovirus genome using the bacteriophage phi29 DNA polymerase. AK Inoue-Nagata LC Albuquerque WB Rocha T Nagata, J Virol Methods 2004 116 209 211 10.1016/j.jviromet.2003.11.015 14738990
    • (2004) J Virol Methods , vol.116 , pp. 209-211
    • Inoue-Nagata, A.K.1    Albuquerque, L.C.2    Rocha, W.B.3    Nagata, T.4
  • 43
    • 33846798148 scopus 로고    scopus 로고
    • Successful application of FTA Classic Card technology and use of bacteriophage phi29 DNA polymerase for large-scale field sampling and cloning of complete maize streak virus genomes
    • 10.1016/j.jviromet.2006.11.004. 17174409
    • Successful application of FTA Classic Card technology and use of bacteriophage phi29 DNA polymerase for large-scale field sampling and cloning of complete maize streak virus genomes. BE Owor DN Shepherd NJ Taylor R Edema AL Monjane JA Thomson DP Martin A Varsani, J Virol Methods 2007 140 100 105 10.1016/j.jviromet.2006.11.004 17174409
    • (2007) J Virol Methods , vol.140 , pp. 100-105
    • Owor, B.E.1    Shepherd, D.N.2    Taylor, N.J.3    Edema, R.4    Monjane, A.L.5    Thomson, J.A.6    Martin, D.P.7    Varsani, A.8
  • 44
    • 40849083670 scopus 로고    scopus 로고
    • A protocol for the rapid isolation of full geminivirus genomes from dried plant tissue
    • 10.1016/j.jviromet.2007.12.014. 18280590
    • A protocol for the rapid isolation of full geminivirus genomes from dried plant tissue. DN Shepherd DP Martin P Lefeuvre AL Monjane BE Owor EP Rybicki A Varsani, J Virol Methods 2008 149 97 102 10.1016/j.jviromet.2007.12.014 18280590
    • (2008) J Virol Methods , vol.149 , pp. 97-102
    • Shepherd, D.N.1    Martin, D.P.2    Lefeuvre, P.3    Monjane, A.L.4    Owor, B.E.5    Rybicki, E.P.6    Varsani, A.7
  • 45
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
    • 10.1093/molbev/msm092. 17488738
    • MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. K Tamura J Dudley M Nei S Kumar, Mol Biol Evol 2007 24 1596 1599 10.1093/molbev/msm092 17488738
    • (2007) Mol Biol Evol , vol.24 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 46
    • 3543097981 scopus 로고    scopus 로고
    • Combining partial order alignment and progressive multiple sequence alignment increases alignment speed and scalability to very large alignment problems
    • 10.1093/bioinformatics/bth126. 14962922
    • Combining partial order alignment and progressive multiple sequence alignment increases alignment speed and scalability to very large alignment problems. C Grasso C Lee, Bioinformatics 2004 20 1546 1556 10.1093/ bioinformatics/bth126 14962922
    • (2004) Bioinformatics , vol.20 , pp. 1546-1556
    • Grasso, C.1    Lee, C.2
  • 47
    • 0242578620 scopus 로고    scopus 로고
    • A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
    • 10.1080/10635150390235520. 14530136
    • A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. S Guindon O Gascuel, Syst Biol 2003 52 696 704 10.1080/10635150390235520 14530136
    • (2003) Syst Biol , vol.52 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2
  • 48
    • 45849154165 scopus 로고    scopus 로고
    • JModelTest: Phylogenetic model averaging
    • 10.1093/molbev/msn083. 18397919
    • jModelTest: phylogenetic model averaging. D Posada, Mol Biol Evol 2008 25 1253 1256 10.1093/molbev/msn083 18397919
    • (2008) Mol Biol Evol , vol.25 , pp. 1253-1256
    • Posada, D.1
  • 49
    • 0033824415 scopus 로고    scopus 로고
    • RDP: Detection of recombination amongst aligned sequences
    • 10.1093/bioinformatics/16.6.562. 10980155
    • RDP: detection of recombination amongst aligned sequences. D Martin E Rybicki, Bioinformatics 2000 16 562 563 10.1093/bioinformatics/16.6.562 10980155
    • (2000) Bioinformatics , vol.16 , pp. 562-563
    • Martin, D.1    Rybicki, E.2
  • 50
    • 13144283628 scopus 로고    scopus 로고
    • A modified bootscan algorithm for automated identification of recombinant sequences and recombination breakpoints
    • DOI 10.1089/aid.2005.21.98
    • A modified bootscan algorithm for automated identification of recombinant sequences and recombination breakpoints. DP Martin D Posada KA Crandall C Williamson, AIDS and Human Retroviruses 2005 21 98 102 10.1089/aid.2005.21.98 (Pubitemid 40179806)
    • (2005) AIDS Research and Human Retroviruses , vol.21 , Issue.1 , pp. 98-102
    • Martin, D.P.1    Posada, D.2    Crandall, K.A.3    Williamson, C.4
  • 51
    • 0026708873 scopus 로고
    • Analyzing the mosaic structure of genes
    • 1556748
    • Analyzing the mosaic structure of genes. J Maynard Smith, J Mol Evol 1992 34 126 129 1556748
    • (1992) J Mol Evol , vol.34 , pp. 126-129
    • Maynard Smith, J.1
  • 52
    • 0036183042 scopus 로고    scopus 로고
    • The effect of recombination on the accuracy of phylogeny estimation
    • 11847565
    • The effect of recombination on the accuracy of phylogeny estimation. D Posada KA Crandall, J Mol Evol 2002 54 396 402 11847565
    • (2002) J Mol Evol , vol.54 , pp. 396-402
    • Posada, D.1    Crandall, K.A.2
  • 53
    • 0033753825 scopus 로고    scopus 로고
    • Sister-Scanning: A Monte Carlo procedure for assessing signals in recombinant sequences
    • 10.1093/bioinformatics/16.7.573. 11038328
    • Sister-Scanning: a Monte Carlo procedure for assessing signals in recombinant sequences. MJ Gibbs JS Armstrong AJ Gibbs, Bioinformatics 2000 16 573 582 10.1093/bioinformatics/16.7.573 11038328
    • (2000) Bioinformatics , vol.16 , pp. 573-582
    • Gibbs, M.J.1    Armstrong, J.S.2    Gibbs, A.J.3
  • 54
    • 34250757252 scopus 로고    scopus 로고
    • An exact nonparametric method for inferring mosaic structure in sequence triplets
    • DOI 10.1534/genetics.106.068874
    • An exact nonparametric method for inferring mosaic structure in sequence triplets. MF Boni D Posada MW Feldman, Genetics 2007 176 1035 1047 17409078 10.1534/genetics.106.068874 (Pubitemid 46961105)
    • (2007) Genetics , vol.176 , Issue.2 , pp. 1035-1047
    • Boni, M.F.1    Posada, D.2    Feldman, M.W.3
  • 55
    • 33751253784 scopus 로고    scopus 로고
    • Recombination patterns in aphthoviruses mirror those found in other picornaviruses
    • DOI 10.1128/JVI.01100-06
    • Recombination patterns in aphthoviruses mirror those found in other picornaviruses. L Heath E van der Walt A Varsani DP Martin, J Virol 2006 80 11827 11832 16971423 10.1128/JVI.01100-06 (Pubitemid 44788894)
    • (2006) Journal of Virology , vol.80 , Issue.23 , pp. 11827-11832
    • Heath, L.1    Van Der Walt, E.2    Varsani, A.3    Martin, D.P.4
  • 56
    • 65949117838 scopus 로고    scopus 로고
    • Identifying recombinants in human and primate immunodeficiency virus sequence alignments using quartet scanning
    • 19397803. 10.1186/1471-2105-10-126
    • Identifying recombinants in human and primate immunodeficiency virus sequence alignments using quartet scanning. P Lemey M Lott DP Martin V Moulton, BMC Bioinformatics 2009 10 126 19397803 10.1186/1471-2105-10-126
    • (2009) BMC Bioinformatics , vol.10 , pp. 126
    • Lemey, P.1    Lott, M.2    Martin, D.P.3    Moulton, V.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.