Estimating the integrity of aged DNA samples by CE

Electrophoresis

Volumn 30, Issue 22, 2009, Pages 3986-3995

  Fattorini, Paolo ^a   Marrubini, Giorgio ^b   Ricci, Ugo ^c   Gerin, Fabio ^a   Grignani, Pierangela ^b   Cigliero, Solange Sorçaburu ^a   Xamin, Andrea ^d   Edalucci, Elisabetta ^a   La Marca, Giancarlo ^e   Previderé, Carlo ^b  

^a UNIVERSITY OF TRIESTE   (Italy)

^b UNIVERSITY OF PAVIA   (Italy)

^c Diagnostic Genetics Unit   (Italy)

^d Resana   (Italy)

^e Azienda U O Meyer   (Italy)

Author keywords

Ancient DNA; CE; DNA damage; PCR fidelity; STR typing

Indexed keywords

AROMATIC COMPOUNDS; ELECTROPHORESIS; POLYMERASE CHAIN REACTION; QUALITY CONTROL; RELIABILITY ANALYSIS;

ANCIENT DNA; CE; DNA BASIS; DNA DAMAGES; DNA SAMPLES; EGYPTIAN MUMMY; MICELLAR SYSTEMS; PCR FIDELITY; PRIMARY STRUCTURES; STR TYPING;

DNA;

ACCURACY; ARTICLE; CAPILLARY ELECTROPHORESIS; CONTROLLED STUDY; DNA DETERMINATION; DNA EXTRACTION; DNA FINGERPRINTING; DNA STRUCTURE; ENANTIOSELECTIVITY; HUMAN; HUMAN TISSUE; HYDROLYSIS; POLYMERASE CHAIN REACTION; RELIABILITY; SENSITIVITY ANALYSIS;

EID: 72749108856     PISSN: 01730835     EISSN: 15222683     Source Type: Journal    
DOI: 10.1002/elps.200900283     Document Type: Article

References (45)

1. Eckert, K. A., Kunkel, T. A., Genome Res. PCR Methods Appl. 1991, 1, 17-24.
2. Mulligan, C. J., Methods Enzymol. 2005, 395, 87-103.
3. Pääbo, S., Poinar, H., Serre, D., Jaenicke-Despres, V., Hebler, J., Rohland, N., Kuch, M. et al., Annu. Rev. Genet. 2004, 38, 645-679.
4. Pääbo, S., Irwin, D., Wilson, A., J. Biol. Chem. 1990, 265, 4718-4721.
5. Pääbo, S., Higuchi, R. G., Wilson, A., J. Biol. Chem. 1989, 264, 9709-9712.
6. Malmström, H., Stora° , J., Dalén, L., Holmlund, G., Götherström, A., Mol. Biol. Evol. 2005, 22, 2040-2047.
7. Nicholson, G. J., Tomiuk, J., Czarnetzki, A., Bachmann, L., Pusch, C. M., Am. J. Phys. Anthropol. 2002, 118, 117-120.
8. Bouwman, A. S., Chilvers, E. R., Brown, K. A., Brown, T. A., Am. J. Phys. Anthropol. 2006, 131, 428-431.
9. Bower, M. A., Spencer,M., Matsumura, S., Nisbet, R. E. R., Howe, C. J., Nucleic Acids Res. 2005, 33, 2549-2556.
10. Cooper, A., Poinar, H. N., Science 2000, 289, 1139-1141.
11. Lindahl, T., Nature 1993, 362, 709-715.
12. Mitchell, D., Willerslev, E., Hansen, A., Mutat. Res. 2005, 571, 265-276.
13. Gilbert, M. T. P., Barnes, I., Collins, M. J., Smith, C., Eklund, J., Goudsmit, J., Poinar, H., Cooper, A., Am. J. Phys. Anthropol. 2005, 128, 110-114.
14. Marota, I., Basile, C., Ubaldi, M., Rollo, F., Am. J. Phys. Anthropol. 2002, 117, 310-318.
15. Gilbert, M. T. P., Willerslev, E., Hansen, A. J., Barnes, I., Rudbeck, L., Lynnerup, N., Cooper, A., Am. J. Hum. Genet. 2003, 72, 32-47.
16. Gilbert,M. T. P., Hansen, A. J.,Willerslev, E., Rudbeck, L., Barnes, I., Lynnerup, N., Cooper, A., Am. J. Hum. Genet. 2003, 72, 48-61.
17. Fattorini, P., Malusá, N., Cossutta, F., Ciofuli, R., Altamura, B. M., Furlan, G., Furlanut, M., Previderè, C., Prog. Forensic Genet. 2000, 8, 78-81.
18. McGhee, J. D., Von Hippel, P. H., Biochemistry 1977, 16, 3276-3293.
19. Höss, M., Jaruga, P., Zastawny, T. H., Dizdaroglu, M., Pääbo, S., Nucleic Acids Res. 1996, 24, 1304-1307.
20. Fattorini, P., Ciofuli, R., Cossutta, F., Giulianini, P., Edomi, P., Furlanut, M, Previderè, C., Electrophoresis 1999, 20, 3349-3357.
21. Ma, Y., Liu, G., Du, M., Stayton, I., Electrophoresis 2004, 25, 1473-1484.
22. Esaka, Y., Inagaki, S., Goto, M., J. Chromatogr. B 2003, 797, 321-329.
23. Adam, T., Friedecký, D., Fairbanks, L. D., Ševč ík, J., Barták, P., Clin. Chem. 1999, 45, 2086-2093.
24. Pizzichini, M., Arezzini, L., Billarelli, C., Carlucci, F., Terzuoli, L., Adv. Exp. Med. Biol. 1998, 431, 797-800.
25. Alfazema, L. N., Howells, S., Perrett, D., J. Chromatogr. A 1998, 817, 345-352.
26. Cheng, M.-L., Liu, T.-Z., Lu, F.-J., Chiu, D. T.-Y., Clin. Biochem. 1999, 32, 473-476.
27. Terzuoli, L., Porcelli, B., Setacci, C., Giubbolini, M., Cinci, G., Carlucci, F., Pagani, R., Marinello, E., J. Chromatogr. B 1999, 728, 185-192.
28. Carlucci, F., Tabucchi, A., Biagioli, B., Sani, G., Lisi, G., Maccherini, M., Rosi, F., Marinello, E., Electrophoresis 2000, 21, 1552-1557.
29. Friedecký, D., Adam, T., Barták, P., Electrophoresis 2002, 23, 565-571.
30. Zhang, L., Liu, Y., Chen, G., J. Chromatogr. A 2004, 1043, 317-321.
31. Zinellu, A., Carru, C., Sotgia, S., Deiana, L., Anal. Biochem. 2004, 330, 298-305.
32. Kattygnarath, D., Mounier, N., Madelaine-Chambrin, I., Gourmel, B., Le Bricon, T., Gisselbrecht, C., Faure, P., Houzé, P., Clin. Biochem. 2006, 39, 86-90.
33. Previderè, C., Micheletti, P., Perossa, R., Grignani, P., Fattorini, P., Int. J. Legal Med. 2002, 116, 334-339.
34. Dizdaroglu, M., Methods Enzymol. 1994, 234, 3-16.
35. Pääbo, S., Proc. Natl. Acad. Sci. USA 1989, 86, 1939-1943.
36. Sandoval Guerriero, K., Revilla Vázquez, A., Segura-Pacheco, B., Dueñas-Gonzalez, A., Electrophoresis 2005, 26, 1057-1062.
37. Swarts, S. G., Smith, G. S., Miao, L., Wheeler, K. T., Radiat. Environ. Biophys. 1996, 35, 41-53.
38. Dizdaroglu, M., Kirkali, G., Jaruga, P., Free Radic. Biol. Med. 2008, 45, 1610-1621.
39. Jaruga, P., Kirkali, G., Dizdaroglu, M., Free Radic. Biol. Med. 2008, 45, 1601-1609.
40. Lim, K. S., Huang, S. H., Jenner, A., Wang, H., Tang, S. Y., Haliwell, B., Free Radic. Biol. Med. 2006, 40, 1939-1948.
41. Strachan, T., Read, A. P., Human Molecular Genetics, 3rd Edn, Garland Science Publishing, London 2004.
42. Pääbo, S., Amplifying ancient DNA. In: Gelfand, D. H., Sninsky, J. J., White, T., Innis, M. (Eds), PCR protocols: a guide to methods and application, Academic Press, New York 1990, pp. 159-166.
43. Gill, P., Whitaker, J., Flaxman, C., Brown, N., Buckleton, J., J. Forensic Sci. 2000, 112, 17-40.
44. Roberts, C., Ingham, S., Int. J. Osteoarchaeol. 2008, 18, 600-613.
45. Fattorini, P., Cossutta, F., Giulianini, P., Edomi, P., Previderè, C., Electrophoresis 2000, 21, 2969-2972.