메뉴 건너뛰기




Volumn 22, Issue 11, 2009, Pages 1810-1816

Differential base stacking interactions induced by trimethylene interstrand DNA cross-links in the 5′-CpG-3′ and 5′-GpC-3′ sequence contexts

Author keywords

[No Author keywords available]

Indexed keywords

5A2 CPG 3A2 OLIGODEOXYNUCLEOTIDE; 5A2 GPC 3A2 OLIGODEOXYNUCLEOTIDE; CPG OLIGODEOXYNUCLEOTIDE; CYCLOPROPANE; DNA; UNCLASSIFIED DRUG;

EID: 72749106795     PISSN: 0893228X     EISSN: 15205010     Source Type: Journal    
DOI: 10.1021/tx900225c     Document Type: Article
Times cited : (9)

References (32)
  • 1
    • 0031801984 scopus 로고    scopus 로고
    • Genotoxic lipid peroxidation products: Their DNA damaging properties and role in formation of endogenous DNA adducts
    • Burcham, P. C. (1998) Genotoxic lipid peroxidation products: Their DNA damaging properties and role in formation of endogenous DNA adducts. Mutagenesis 13, 287-305.
    • (1998) Mutagenesis , vol.13 , pp. 287-305
    • Burcham, P.C.1
  • 2
    • 0033257464 scopus 로고    scopus 로고
    • 2-propanodeoxyguanosine adducts as endogenous DNA lesions in rodents and humans
    • 2-propanodeoxyguanosine adducts as endogenous DNA lesions in rodents and humans. IARC Sci. Publ. 150, 45-54.
    • (1999) IARC Sci. Publ. , vol.150 , pp. 45-54
    • Chung, F.L.1    Zhang, L.2    Ocando, J.E.3    Nath, R.G.4
  • 4
    • 34548508693 scopus 로고    scopus 로고
    • Lipid peroxidation-induced DNA damage in cancer-prone inflammatory diseases: A review of published adduct types and levels in humans
    • DOI 10.1016/j.freeradbiomed.2007.07.012, PII S0891584907004935
    • Nair, U., Bartsch, H., and Nair, J. (2007) Lipid peroxidation-induced DNA damage in cancer-prone inflammatory diseases: A review of published adduct types and levels in humans. Free Radical Biol. Med. 43, 1109-1120. (Pubitemid 47374441)
    • (2007) Free Radical Biology and Medicine , vol.43 , Issue.8 , pp. 1109-1120
    • Nair, U.1    Bartsch, H.2    Nair, J.3
  • 5
    • 0033257353 scopus 로고    scopus 로고
    • Reactions of α-acetoxy-N-nitrosopyrrolidine and crotonaldehyde with DNA
    • Hecht, S. S., Upadhyaya, P., and Wang, M. (1999) Reactions of α-acetoxy-N-nitrosopyrrolidine and crotonaldehyde with DNA. IARC Sci. Publ. 150, 147-154.
    • (1999) IARC Sci. Publ. , vol.150 , pp. 147-154
    • Hecht, S.S.1    Upadhyaya, P.2    Wang, M.3
  • 6
    • 0032518993 scopus 로고    scopus 로고
    • 2-propanodeoxyguanosine adducts: Potential new biomarkers of smoking-induced DNA damage in human oral tissue
    • 2-propanodeoxyguanosine adducts: Potential new biomarkers of smoking-induced DNA damage in human oral tissue. Cancer Res. 58, 581-584.
    • (1998) Cancer Res. , vol.58 , pp. 581-584
    • Nath, R.G.1    Ocando, J.E.2    Guttenplan, J.B.3    Chung, F.L.4
  • 7
    • 0025814980 scopus 로고
    • Chemistry and biochemistry of 4-hydroxynonenal, malonaldehyde and related aldehydes
    • Esterbauer, H., Schaur, R. J., and Zollner, H. (1991) Chemistry and biochemistry of 4-hydroxynonenal, malonaldehyde and related aldehydes. Free Radical Biol. Med. 11, 81-128. (Pubitemid 121003917)
    • (1991) Free Radical Biology and Medicine , vol.11 , Issue.1 , pp. 81-128
    • Esterbauer, H.1    Schaur, R.J.2    Zollner, H.3
  • 11
    • 0037958699 scopus 로고    scopus 로고
    • 2-deoxyguanosine adducts of the lipid peroxidation product trans-4-hydroxynonenal
    • 2-deoxyguanosine adducts of the lipid peroxidation product trans-4-hydroxynonenal. J. Am. Chem. Soc. 125, 5687-5700.
    • (2003) J. Am. Chem. Soc. , vol.125 , pp. 5687-5700
    • Wang, H.1    Kozekov, I.D.2    Harris, T.M.3    Rizzo, C.J.4
  • 16
    • 0035961532 scopus 로고    scopus 로고
    • Structural studies of an oligodeoxynucleotide containing a trimethylene interstrand cross-link in a 5′-(CpG) motif: Model of a malondialdehyde cross-link
    • DOI 10.1021/ja003163w
    • Dooley, P. A., Tsarouhtsis, D., Korbel, G. A., Nechev, L. V., Shearer, J., Zegar, I. S., Harris, C. M., Stone, M. P., and Harris, T. M. (2001) Structural studies of an oligodeoxynucleotide containing a trimethylene interstrand cross-link in a 5′-(CpG) motif: Model of a malondialdehyde cross-link. J. Am. Chem. Soc. 123, 1730-1739. (Pubitemid 32179423)
    • (2001) Journal of the American Chemical Society , vol.123 , Issue.8 , pp. 1730-1739
    • Dooley, P.A.1    Tsarouhtsis, D.2    Korbel, G.A.3    Nechev, L.V.4    Shearer, J.5    Zegar, I.S.6    Harris, C.M.7    Stone, M.P.8    Harris, T.M.9
  • 17
    • 0037425566 scopus 로고    scopus 로고
    • NMR determination of the conformation of a trimethylene interstrand cross-link in an oligodeoxynucleotide duplex containing a 5′-d(GpC) motif
    • DOI 10.1021/ja0207798
    • Dooley, P. A., Zhang, M., Korbel, G. A., Nechev, L. V., Harris, C. M., Stone, M. P., and Harris, T. M. (2003) NMR determination of the conformation of a trimethylene interstrand cross-link in an oligodeoxynucleotide duplex containing a 5′-d(GpC) motif. J. Am. Chem. Soc. 125, 62-72. (Pubitemid 36068644)
    • (2003) Journal of the American Chemical Society , vol.125 , Issue.1 , pp. 62-72
    • Dooley, P.A.1    Zhang, M.2    Korbel, G.A.3    Nechev, L.V.4    Harris, C.M.5    Stone, M.P.6    Harris, T.M.7
  • 21
    • 0002636134 scopus 로고
    • Pairwise solute descreening of solute charges from a dielectric medium
    • Hawkins, G. D., Cramer, C. J., and Truhlar, D. G. (1995) Pairwise solute descreening of solute charges from a dielectric medium. Chem. Phys. Lett. 246, 122-129.
    • (1995) Chem. Phys. Lett. , vol.246 , pp. 122-129
    • Hawkins, G.D.1    Cramer, C.J.2    Truhlar, D.G.3
  • 22
    • 33748390341 scopus 로고    scopus 로고
    • Parametrized models of aqueous free energies of solvation based on pairwise descreening of solute atomic charges from a dielectric medium
    • Hawkins, G. D., Cramer, C. J., and Truhlar, D. G. (1996) Parametrized models of aqueous free energies of solvation based on pairwise descreening of solute atomic charges from a dielectric medium. J. Phys. Chem. 100, 19824-19839.
    • (1996) J. Phys. Chem. , vol.100 , pp. 19824-19839
    • Hawkins, G.D.1    Cramer, C.J.2    Truhlar, D.G.3
  • 23
    • 14244273182 scopus 로고    scopus 로고
    • Theory and applications of the Generalized Born solvation model in macromolecular simulations
    • DOI 10.1002/1097-0282(2000)56:4<275::AID-BIP10024>3.0.CO;2-E
    • Tsui, V., and Case, D. A. (2000) Theory and applications of the generalized Born solvation model in macromolecular simulations. Biopolymers 56, 275-291. (Pubitemid 34105875)
    • (2000) Biopolymers , vol.56 , Issue.4 , pp. 275-291
    • Tsui, V.1    Case, D.A.2
  • 24
    • 33646940952 scopus 로고
    • Numerical integration of the cartesian equations of motion of a system with constraints: Molecular dynamics of n-alkanes
    • Ryckaert, J.-P., Ciccotti, G., and Berendsen, H. J. C. (1977) Numerical integration of the cartesian equations of motion of a system with constraints: Molecular dynamics of n-alkanes. J. Comp. Phys. 23, 327-341.
    • (1977) J. Comp. Phys. , vol.23 , pp. 327-341
    • Ryckaert, J.-P.1    Ciccotti, G.2    Berendsen, H.J.C.3
  • 25
    • 0242396923 scopus 로고    scopus 로고
    • 3DNA: A software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures
    • Lu, X. J., and Olson, W. K. (2003) 3DNA: A software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures. Nucleic Acids Res. 31, 5108-5121.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 5108-5121
    • Lu, X.J.1    Olson, W.K.2
  • 27
    • 0020674698 scopus 로고
    • Base-stacking and base-pairing contributions to helix stability: Thermodynamics of double-helix formation with CCGG, CCGGp, CCGGAp, ACCGGp, CCGGUp, and ACCGGUp
    • Petersheim, M., and Turner, D. G. (1983) Base-stacking and base-pairing contributions to helix stability: Thermodynamics of double-helix formation with CCGG, CCGGp, CCGGAp, ACCGGp, CCGGUp, and ACCGGUp. Biochemistry 22, 256-263. (Pubitemid 13146564)
    • (1983) Biochemistry , vol.22 , Issue.2 , pp. 256-263
    • Petersheim, M.1    Turner, D.H.2
  • 29
    • 32644434270 scopus 로고    scopus 로고
    • Base-stacking and base-pairing contributions into thermal stability of the DNA double helix
    • DOI 10.1093/nar/gkj454
    • Yakovchuk, P., Protozanova, E., and Frank-Kamenetskii, M. D. (2006) Base-stacking and base-pairing contributions into thermal stability of the DNA double helix. Nucleic Acids Res. 34, 564-574. (Pubitemid 43240244)
    • (2006) Nucleic Acids Research , vol.34 , Issue.2 , pp. 564-574
    • Yakovchuk, P.1    Protozanova, E.2    Frank-Kamenetskii, M.D.3
  • 31
    • 0025359651 scopus 로고
    • NMR and computational characterization of mitomycin cross-linked to adjacent deoxyguanosines in the minor groove of the d(T-A-C-G-T-A)•d(T-A-C- G-T-A) duplex
    • Norman, D., Live, D., Sastry, M., Lipman, R., Hingerty, B. E., Tomasz, M., Broyde, S., and Patel, D. J. (1990) NMR and computational characterization of mitomycin cross-linked to adjacent deoxyguanosines in the minor groove of the d(T-A-C-G-T-A)•d(T-A-C-G-TA) dulplex. Biochemistry 29, 2861-2875. (Pubitemid 20122623)
    • (1990) Biochemistry , vol.29 , Issue.11 , pp. 2861-2875
    • Norman, D.1    Live, D.2    Sastry, M.3    Lipman, R.4    Hingerty, B.E.5    Tomasz, M.6    Broyde, S.7    Patel, D.J.8


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.