Tissue culture-induced variation at simple sequence repeats in sorghum (Sorghum bicolor L.) is genotype-dependent and associated with down-regulated expression of a mismatch repair gene, MLH3

Plant Cell Reports

Volumn 29, Issue 1, 2010, Pages 51-59

  Zhang, Meishan ^a,b   Wang, Huan ^a   Dong, Zhenying ^a   Qi, Bao ^a   Xu, Kezhang ^b   Liu, Bao ^a  

^a NORTHEAST NORMAL UNIVERSITY   (China)

^b JILIN AGRICULTURAL UNIVERSITY   (China)

Author keywords

Mismatch repair (MMR) genes; Pure line versus hybrid; Simple sequence repeat (SSR); Somaclonal variation; Sorghum; Tissue culture

Indexed keywords

EUKARYOTA; SORGHUM BICOLOR; SPERMATOPHYTA;

EID: 72749097605     PISSN: 07217714     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00299-009-0797-9     Document Type: Article

References (28)

1. Bertagnolli MM, Niedzwiecki D, Compton CC, Hahn HP, Hall M, Damas B, Jewell SD, Mayer RJ, Goldberg RM, Saltz LB, Warren RS, Redston M (2009) Microsatellite instability predicts improved response to adjuvant therapy with irinotecan, fluorouracil, and leucovorin in stage III colon cancer: cancer and leukemia group B protocol 89803. J Clin Oncol 27: 1814-1821.
2. Boyko A, Kovalchuk I (2008) Epigenetic control of plant stress response. Environ Mol Mutagen 49: 61-72.
3. Chowdari KV, Ramakrishna W, Tamhankar SA, Hendre RR, Gupta VS, Sahasrabudhe NA, Ranjekar PK (1998) Identification of minor DNA variations in rice somaclonal variants. Plant Cell Rep 18: 55-58.
4. Gao DY, Vallejo VA, He B, Gai YC, Sun LH (2009) Detection of DNA changes in somaclonal mutants of rice using SSR markers and transposon display. Plant Cell Tissue Org Cult 98: 187-196.
5. Haugen AC, Goel A, Yamada K, Marra G, Nguyen TP, Nagasaka T, Kanazawa S, Koike J, Kikuchi Y, Zhong X, Arita M, Shibuya K, Oshimura M, Hemmi H, Boland CR, Koi M (2008) Genetic instability caused by loss of MutS homologue 3 in human colorectal cancer. Cancer Res 68: 8465-8472.
6. Joyce SM, Cassells AC, Jain SM (2003) Stress and aberrant phenotypes in in vitro culture. Plant Cell Tissue Org 74: 103-121.
7. Kaeppler SM, Kaeppler HF, Rhee Y (2000) Epigenetic aspects of somaclonal variation in plants. Plant Mol Biol 43: 179-188.
8. Krizova K, Fojtova M, Depicker A, Kovarik A (2009) Cell culture-induced gradual and frequent epigenetic reprogramming of invertedly repeated tobacco transgene epialleles. Plant Physiol 149: 1493-1504.
9. Larkin PJ, Scowcroft WR (1981) Somaclonal variation-a novel source of variability from cell cultures for plant improvement. Theor Appl Genet 60: 197-214.
10. Luo X, Fu Y, Zhang P, Wu S, Tian F, Liu J, Zhu Z, Yang J, Sun C (2009) Additive and over-dominant effects resulting from epistatic loci are the primary genetic basis of heterosis in rice. J Integr Plant Biol 51: 393-408.
11. Madlung A, Comai L (2004) The effect of stress on genome regulation and structure. Ann Bot 94: 481-495.
12. Marum L, Rocheta M, Maroco J, Oliveira MM, Miguel C (2009) Analysis of genetic stability at SSR loci during somatic embryogenesis in maritime pine (Pinus pinaster). Plant Cell Rep 28: 673-682.
13. McClintock B (1984) The significance of responses of the genome to challenge. Science 226: 792-801.
14. Mohan Jain S (2001) Tissue culture-derived variation in crop improvement. Euphytica 118: 153-166.
15. Nag DK, Suri M, Stenson EK (2004) Both CAG repeats and inverted DNA repeats stimulate spontaneous unequal sister-chromatid exchange in Saccharomyces cerevisiae. Nucleic Acids Res 32: 5677-5684.
16. Phillips RL, Kaeppler SM, Olhoft P (1994) Genetic instability of plant tissue cultures: breakdown of normal controls. Proc Natl Acad Sci USA 91: 5222-5226.
17. Rahman MH, Rajora OP (2001) Microsatellite DNA somaclonal variation in micropropagated trembling aspen (Populus tremuloides). Plant Cell Rep 20: 531-536.
18. Rodríguez López CM, Wetten AC, Wilkinson MJ (2004) Detection and quantification of in vitro-culture induced chimerism using simple sequence repeat (SSR) analysis in Theobroma cacao (L.). Theor Appl Genet 110: 157-166.
19. Ryu TH, Yi SI, Kwon YS, Kim BD (2007) Microsatellite DNA somaclonal variation of regenerated plants via cotyledon culture of hot pepper (Capsicum annuum L.). Kor J Genet 29: 459-464.
20. Schellenbaum P, Mohler V, Wenzel G, Walter B (2008) Variation in DNA methylation patterns of grapevine somaclones (Vitis vinifera L.). BMC Plant Biol 8: 78. doi: 10. 1186/1471-2229-8-78.
21. Tanurdzic M, Vaughn MW, Jiang H, Lee TJ, Slotkin RK, Sosinski B, Thompson WF, Doerge RW, Martienssen RA (2008) Epigenomic consequences of immortalized plant cell suspension culture. PLoS Biol 6: 2880-2895.
22. Varshney RK, Graner A, Sorrells ME (2005) Genic microsatellite markers in plants: features and applications. Trend Biotechnol 23: 48-55.
23. Vilar E, Scaltriti M, Balmãa J, Saura C, Guzman M, Arribas J, Baselga J, Tabernero J (2008) Microsatellite instability due to hMLH1 deficiency is associated with increased cytotoxicity to irinotecan in human colorectal cancer cell lines. Br J Cancer 99: 1607-1612.
24. Wang HY, Chai Y, Chu XC, Zhao YY, Wu Y, Zhao JH, Ngezahayo F, Xu CM, Liu B (2009) Molecular characterization of a rice mutator-phenotype derived from an incompatible cross-pollination reveals transgenerational mobilization of multiple transposable elements and extensive epigenetic instability. BMC Plant Biol 9. doi: 10. 1186/1471-2229-9-63.
25. Wu YQ, Huang Y (2007) An SSR genetic map of Sorghum bicolor (L.) Moench and its comparison to a published genetic map. Genome 50: 84-89.
26. Wu SY, Culligan K, Lamers M, Hays J (2003) Dissimilar mispair-recognition spectra of Arabidopsis DNA-mismatch-repair proteins MSH2·MSH6 (Musα) and MSH2·MSH7 (Musγ). Nucleic Acids Res 31: 6027-6034.
27. Yu J, Mallon MA, Zhang W, Freimuth RR, Marsh S, Watson MA, Goodfellow PJ, McLeod HL (2006) DNA repair pathway profiling and microsatellite instability in colorectal cancer. Clin Cancer Res 12: 5104-5111.
28. Zhang MS, Xu CM, Yan HY, Zhao N, Von Wettstein D, Liu B (2009) Limited tissue culture-induced mutations and linked epigenetic modifications in F1 hybrids of sorghum pure lines are accompanied by increased transcription of DNA methyltransferases and 5-methylcytosine glycosylases. Plant J 57: 666-679.