메뉴 건너뛰기




Volumn 161, Issue 1, 2010, Pages 2-6

Guide to the Nomenclature of Kinetoplastid RNA Editing: A Proposal

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; GENETICS; KINETOPLASTIDA; METABOLISM; NOMENCLATURE; PHYSIOLOGY; RNA EDITING;

EID: 72649096964     PISSN: 14344610     EISSN: 16180941     Source Type: Journal    
DOI: 10.1016/j.protis.2009.10.001     Document Type: Article
Times cited : (27)

References (38)
  • 1
    • 58249121139 scopus 로고    scopus 로고
    • The MRB1 complex functions in kinetoplastid RNA processing
    • Acestor N., Panigrahi A.K., Carnes J., Zíková A., and Stuart KD. The MRB1 complex functions in kinetoplastid RNA processing. RNA 15 (2009) 277-286
    • (2009) RNA , vol.15 , pp. 277-286
    • Acestor, N.1    Panigrahi, A.K.2    Carnes, J.3    Zíková, A.4    Stuart, KD.5
  • 3
    • 0037276124 scopus 로고    scopus 로고
    • A 100-kD complex of two RNA-binding proteins from mitochondria of Leishmania tarentolae catalyzes RNA annealing and interacts with several RNA editing components
    • Aphasizhev R., Aphasizheva I., Nelson R.E., and Simpson L. A 100-kD complex of two RNA-binding proteins from mitochondria of Leishmania tarentolae catalyzes RNA annealing and interacts with several RNA editing components. RNA 9 (2003) 62-76
    • (2003) RNA , vol.9 , pp. 62-76
    • Aphasizhev, R.1    Aphasizheva, I.2    Nelson, R.E.3    Simpson, L.4
  • 4
    • 0037040412 scopus 로고    scopus 로고
    • Trypanosome mitochondrial 3′ terminal uridylyl transferase (TUTase): the key enzyme in U-insertion/deletion RNA editing
    • Aphasizhev R., Sbicego S., Peris M., Jang S.H., Aphasizheva I., Simpson A.M., Rivlin A., and Simpson L. Trypanosome mitochondrial 3′ terminal uridylyl transferase (TUTase): the key enzyme in U-insertion/deletion RNA editing. Cell 108 (2002) 637-648
    • (2002) Cell , vol.108 , pp. 637-648
    • Aphasizhev, R.1    Sbicego, S.2    Peris, M.3    Jang, S.H.4    Aphasizheva, I.5    Simpson, A.M.6    Rivlin, A.7    Simpson, L.8
  • 5
    • 0025189769 scopus 로고
    • A model for RNA editing in kinetoplastid mitochondria: "Guide" RNA molecules transcribed from maxicircle DNA provide the edited information
    • Blum B., Bakalara N., and Simpson L. A model for RNA editing in kinetoplastid mitochondria: "Guide" RNA molecules transcribed from maxicircle DNA provide the edited information. Cell 60 (1990) 189-198
    • (1990) Cell , vol.60 , pp. 189-198
    • Blum, B.1    Bakalara, N.2    Simpson, L.3
  • 6
    • 37549054714 scopus 로고    scopus 로고
    • RNA editing in Trypanosoma brucei requires three different editosomes
    • Carnes J., Trotter J.R., Peltan A., Fleck M., and Stuart K. RNA editing in Trypanosoma brucei requires three different editosomes. Mol Cell Biol 28 (2008) 122-130
    • (2008) Mol Cell Biol , vol.28 , pp. 122-130
    • Carnes, J.1    Trotter, J.R.2    Peltan, A.3    Fleck, M.4    Stuart, K.5
  • 7
    • 34548592133 scopus 로고    scopus 로고
    • RNA-protein interactions in assembled editing complexes in trypanosomes
    • Cruz-Reyes J. RNA-protein interactions in assembled editing complexes in trypanosomes. Methods Enzymol 424 (2007) 107-125
    • (2007) Methods Enzymol , vol.424 , pp. 107-125
    • Cruz-Reyes, J.1
  • 8
    • 0032529450 scopus 로고    scopus 로고
    • Trypanosoma brucei U insertion and U deletion activities co-purify with an enzymatic editing complex but are differentially optimized
    • Cruz-Reyes J., Rusch L.N., and Sollner-Webb B. Trypanosoma brucei U insertion and U deletion activities co-purify with an enzymatic editing complex but are differentially optimized. Nucleic Acids Res 26 (1998) 3634-3639
    • (1998) Nucleic Acids Res , vol.26 , pp. 3634-3639
    • Cruz-Reyes, J.1    Rusch, L.N.2    Sollner-Webb, B.3
  • 9
    • 65249140056 scopus 로고    scopus 로고
    • Differential functions of two editosome exoUases in Trypanosoma brucei
    • Ernst N.L., Panicucci B., Carnes J., and Stuart K. Differential functions of two editosome exoUases in Trypanosoma brucei. RNA 15 (2009) 947-957
    • (2009) RNA , vol.15 , pp. 947-957
    • Ernst, N.L.1    Panicucci, B.2    Carnes, J.3    Stuart, K.4
  • 10
    • 44649128170 scopus 로고    scopus 로고
    • 3′ adenylation determines mRNA abundance and monitors completion of RNA editing in T. brucei mitochondria
    • Etheridge R.D., Aphasizheva I., Gershon P.D., and Aphasizhev R. 3′ adenylation determines mRNA abundance and monitors completion of RNA editing in T. brucei mitochondria. EMBO J 27 (2008) 1596-1608
    • (2008) EMBO J , vol.27 , pp. 1596-1608
    • Etheridge, R.D.1    Aphasizheva, I.2    Gershon, P.D.3    Aphasizhev, R.4
  • 11
    • 62649115927 scopus 로고    scopus 로고
    • Snapshots of the RNA editing machine in trypanosomes captured at different assembly stages in vivo
    • Golas M.M., Bohm C., Sander B., Effenberger K., Brecht M., Stark H., and Göringer HU. Snapshots of the RNA editing machine in trypanosomes captured at different assembly stages in vivo. EMBO J 28 (2009) 766-778
    • (2009) EMBO J , vol.28 , pp. 766-778
    • Golas, M.M.1    Bohm, C.2    Sander, B.3    Effenberger, K.4    Brecht, M.5    Stark, H.6    Göringer, HU.7
  • 12
    • 62549093977 scopus 로고    scopus 로고
    • Kinetoplastid guide RNA biogenesis is dependent on subunits of the mitochondrial RNA binding complex 1 and mitochondrial RNA polymerase
    • Hashimi H., Cicova Z., Novotna L., Wen Y.Z., and Lukeš J. Kinetoplastid guide RNA biogenesis is dependent on subunits of the mitochondrial RNA binding complex 1 and mitochondrial RNA polymerase. RNA 15 (2009) 588-599
    • (2009) RNA , vol.15 , pp. 588-599
    • Hashimi, H.1    Cicova, Z.2    Novotna, L.3    Wen, Y.Z.4    Lukeš, J.5
  • 13
    • 42449091992 scopus 로고    scopus 로고
    • TbRGG1, an essential protein involved in kinetoplastid RNA metabolism that is associated with a novel multiprotein complex
    • Hashimi H., Zíková A., Panigrahi A.K., Stuart K.D., and Lukeš J. TbRGG1, an essential protein involved in kinetoplastid RNA metabolism that is associated with a novel multiprotein complex. RNA 14 (2008) 970-980
    • (2008) RNA , vol.14 , pp. 970-980
    • Hashimi, H.1    Zíková, A.2    Panigrahi, A.K.3    Stuart, K.D.4    Lukeš, J.5
  • 14
    • 46649094360 scopus 로고    scopus 로고
    • Determinants for association and guide RNA-directed endonuclease cleavage by purified RNA editing complexes from Trypanosoma brucei
    • Hernandez A., Panigrahi A., Cifuentes-Rojas C., Sacharidou A., Stuart K., and Cruz-Reyes J. Determinants for association and guide RNA-directed endonuclease cleavage by purified RNA editing complexes from Trypanosoma brucei. J Mol Biol 381 (2008) 35-48
    • (2008) J Mol Biol , vol.381 , pp. 35-48
    • Hernandez, A.1    Panigrahi, A.2    Cifuentes-Rojas, C.3    Sacharidou, A.4    Stuart, K.5    Cruz-Reyes, J.6
  • 15
    • 0035801635 scopus 로고    scopus 로고
    • Roles for ligases in the RNA editing complex of Trypanosoma brucei: band IV is needed for U-deletion and RNA repair
    • Huang C.E., Cruz-Reyes J., Zhelonkina A.G., O'Hearn S., Wirtz E., and Sollner-Webb B. Roles for ligases in the RNA editing complex of Trypanosoma brucei: band IV is needed for U-deletion and RNA repair. EMBO J 20 (2001) 4694-4703
    • (2001) EMBO J , vol.20 , pp. 4694-4703
    • Huang, C.E.1    Cruz-Reyes, J.2    Zhelonkina, A.G.3    O'Hearn, S.4    Wirtz, E.5    Sollner-Webb, B.6
  • 16
    • 0029788229 scopus 로고    scopus 로고
    • RNA editing: a mechanism for gRNA-specified uridylate insertion into precursor mRNA [see comments]
    • Kable M.L., Seiwert S.D., Heidmann S., and Stuart K. RNA editing: a mechanism for gRNA-specified uridylate insertion into precursor mRNA [see comments]. Science 273 (1996) 1189-1195
    • (1996) Science , vol.273 , pp. 1189-1195
    • Kable, M.L.1    Seiwert, S.D.2    Heidmann, S.3    Stuart, K.4
  • 17
    • 33846164078 scopus 로고    scopus 로고
    • In Trypanosoma brucei RNA editing, TbMP18 (band VII) is critical for editosome integrity and for both insertional and deletional cleavages
    • Law J.A., O'Hearn S., and Sollner-Webb B. In Trypanosoma brucei RNA editing, TbMP18 (band VII) is critical for editosome integrity and for both insertional and deletional cleavages. Mol Cell Biol 27 (2007) 777-787
    • (2007) Mol Cell Biol , vol.27 , pp. 777-787
    • Law, J.A.1    O'Hearn, S.2    Sollner-Webb, B.3
  • 18
    • 68149089810 scopus 로고    scopus 로고
    • Structure of the core editing complex (L-complex) involved in uridine insertion/deletion RNA editing in trypanosomatid mitochondria
    • Li F, Ge P, Hui W, Atanasov A, Rogers K, Guo Q, Osato D, Falick AM, Zhou H, Simpson L (2009) Structure of the core editing complex (L-complex) involved in uridine insertion/deletion RNA editing in trypanosomatid mitochondria. Proc Natl Acad Sci USA 106:12306-12310
    • (2009) Proc Natl Acad Sci USA , vol.106 , pp. 12306-12310
    • Li, F.1    Ge, P.2    Hui, W.3    Atanasov, A.4    Rogers, K.5    Guo, Q.6    Osato, D.7    Falick, A.M.8    Zhou, H.9    Simpson, L.10
  • 19
    • 60349110387 scopus 로고    scopus 로고
    • Structural mapping of spliceosomes by electron microscopy
    • Lührmann R., and Stark H. Structural mapping of spliceosomes by electron microscopy. Curr Opin Struct Biol 19 (2009) 96-102
    • (2009) Curr Opin Struct Biol , vol.19 , pp. 96-102
    • Lührmann, R.1    Stark, H.2
  • 20
    • 0026710969 scopus 로고
    • The polarity of editing within a multiple gRNA-mediated domain is due to formation of anchors for upstream gRNAs by downstream editing
    • Maslov D.A., and Simpson L. The polarity of editing within a multiple gRNA-mediated domain is due to formation of anchors for upstream gRNAs by downstream editing. Cell 70 (1992) 459-467
    • (1992) Cell , vol.70 , pp. 459-467
    • Maslov, D.A.1    Simpson, L.2
  • 21
    • 0030848282 scopus 로고    scopus 로고
    • Disruption of a gene encoding a novel mitochondrial DEAD-box protein in Trypanosoma brucei affects edited mRNAs
    • Missel A., Souza A.E., Nörskau G., and Göringer HU. Disruption of a gene encoding a novel mitochondrial DEAD-box protein in Trypanosoma brucei affects edited mRNAs. Mol Cell Biol 17 (1997) 4895-4903
    • (1997) Mol Cell Biol , vol.17 , pp. 4895-4903
    • Missel, A.1    Souza, A.E.2    Nörskau, G.3    Göringer, HU.4
  • 22
    • 0344198459 scopus 로고    scopus 로고
    • The spliceosome: the most complex macromolecular machine in the cell?
    • Nilsen TW. The spliceosome: the most complex macromolecular machine in the cell?. Bioessays 25 (2003) 1147-1149
    • (2003) Bioessays , vol.25 , pp. 1147-1149
    • Nilsen, TW.1
  • 23
    • 67649305168 scopus 로고    scopus 로고
    • Uridine insertion/deletion RNA editing in trypanosomatid mitochondria: In search of the editosome
    • Osato D, Rogers K, Guo Q, Li F, Richmond G, Klug F, Simpson L (2009). Uridine insertion/deletion RNA editing in trypanosomatid mitochondria: in search of the editosome. RNA 15:1338-1344
    • (2009) RNA , vol.15 , pp. 1338-1344
    • Osato, D.1    Rogers, K.2    Guo, Q.3    Li, F.4    Richmond, G.5    Klug, F.6    Simpson, L.7
  • 24
    • 33646870148 scopus 로고    scopus 로고
    • Compositionally and functionally distinct editosomes in Trypanosoma brucei
    • Panigrahi A.K., Ernst N.L., Domingo G.J., Fleck M., Salavati R., and Stuart KD. Compositionally and functionally distinct editosomes in Trypanosoma brucei. RNA 12 (2006) 1038-1049
    • (2006) RNA , vol.12 , pp. 1038-1049
    • Panigrahi, A.K.1    Ernst, N.L.2    Domingo, G.J.3    Fleck, M.4    Salavati, R.5    Stuart, KD.6
  • 26
    • 74049121769 scopus 로고    scopus 로고
    • Isolation and compositional analysis of trypanosomatid editosomes
    • Panigrahi A.K., Schnaufer A., and Stuart KD. Isolation and compositional analysis of trypanosomatid editosomes. Methods Enzymol 424 (2007) 3-24
    • (2007) Methods Enzymol , vol.424 , pp. 3-24
    • Panigrahi, A.K.1    Schnaufer, A.2    Stuart, KD.3
  • 29
    • 0030928201 scopus 로고    scopus 로고
    • Purification of a functional enzymatic editing complex from Trypanosoma brucei mitochondria
    • Rusche L.N., Cruz-Reyes J., Piller K.J., and Sollner-Webb B. Purification of a functional enzymatic editing complex from Trypanosoma brucei mitochondria. EMBO J 16 (1997) 4069-4081
    • (1997) EMBO J , vol.16 , pp. 4069-4081
    • Rusche, L.N.1    Cruz-Reyes, J.2    Piller, K.J.3    Sollner-Webb, B.4
  • 30
    • 33747478692 scopus 로고    scopus 로고
    • Crystal structures of T. brucei MRP1/MRP2 guide-RNA binding complex reveal RNA matchmaking mechanism
    • Schumacher M.A., Karamooz E., Zíková A., Trantirek L., and Lukeš J. Crystal structures of T. brucei MRP1/MRP2 guide-RNA binding complex reveal RNA matchmaking mechanism. Cell 126 (2006) 701-711
    • (2006) Cell , vol.126 , pp. 701-711
    • Schumacher, M.A.1    Karamooz, E.2    Zíková, A.3    Trantirek, L.4    Lukeš, J.5
  • 31
    • 0029942430 scopus 로고    scopus 로고
    • Direct visualization of uridylate deletion in vitro suggests a mechanism for kinetoplastid RNA editing
    • Seiwert S.D., Heidmann S., and Stuart K. Direct visualization of uridylate deletion in vitro suggests a mechanism for kinetoplastid RNA editing. Cell 84 (1996) 831-841
    • (1996) Cell , vol.84 , pp. 831-841
    • Seiwert, S.D.1    Heidmann, S.2    Stuart, K.3
  • 32
    • 1642580825 scopus 로고    scopus 로고
    • Mitochondrial proteins and complexes in Leishmania and Trypanosoma involved in U-insertion/deletion RNA editing
    • Simpson L., Aphasizhev R., Gao G., and Kang X. Mitochondrial proteins and complexes in Leishmania and Trypanosoma involved in U-insertion/deletion RNA editing. RNA 10 (2004) 159-170
    • (2004) RNA , vol.10 , pp. 159-170
    • Simpson, L.1    Aphasizhev, R.2    Gao, G.3    Kang, X.4
  • 35
    • 38649125860 scopus 로고    scopus 로고
    • KREPA6 is an RNA-binding protein essential for editosome integrity and survival of Trypanosoma brucei
    • Tarun Jr. S.Z., Schnaufer A., Ernst N.L., Proff R., Deng J., Hol W., and Stuart K. KREPA6 is an RNA-binding protein essential for editosome integrity and survival of Trypanosoma brucei. RNA 14 (2008) 347-358
    • (2008) RNA , vol.14 , pp. 347-358
    • Tarun Jr., S.Z.1    Schnaufer, A.2    Ernst, N.L.3    Proff, R.4    Deng, J.5    Hol, W.6    Stuart, K.7
  • 38
    • 43849091242 scopus 로고    scopus 로고
    • Structure and function of the native and recombinant mitochondrial MRP1/MRP2 complex from Trypanosoma brucei
    • Zíková A., Kopecna J., Schumacher M.A., Stuart K., Trantirek L., and Lukeš J. Structure and function of the native and recombinant mitochondrial MRP1/MRP2 complex from Trypanosoma brucei. Int J Parasitol 38 (2008) 901-912
    • (2008) Int J Parasitol , vol.38 , pp. 901-912
    • Zíková, A.1    Kopecna, J.2    Schumacher, M.A.3    Stuart, K.4    Trantirek, L.5    Lukeš, J.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.