An insight into the genetic polymorphism among European populations of Lactuca serriola assessed by AFLP

Biochemical Systematics and Ecology

Volumn 37, Issue 5, 2009, Pages 597-608

  Lebeda, Aleš ^a   Kitner, Miloslav ^a   Dziechciarková, Marta ^a   Doležalová, Ivana ^a   Křístková, Eva ^a   Lindhout, Pim ^b  

^a PALACKÝ UNIVERSITY   (Czech Republic)

^b De Ruiter Seeds   (Netherlands)

Author keywords

Genetic variation; Geographical distribution; Germplasm exploitation; Isozymes; Prickly lettuce

Indexed keywords

ALGORITHM; DICOTYLEDON; DIVERSITY INDEX; ENZYME ACTIVITY; GENETIC VARIATION; GEOGRAPHICAL DISTRIBUTION; GERMPLASM; POLYMORPHISM; PROTEIN;

LACTUCA; LACTUCA SATIVA; LACTUCA SERRIOLA;

EID: 72549107533     PISSN: 03051978     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.bse.2009.10.010     Document Type: Article

References (80)

1. Alexander J.M., Poll M., Hansjörg D., and Edwards P.J. Contrasting patterns of genetic variation and structure in plant invasions of mountains. Diversity and Distributions 15 (2009) 502-515
2. Alexander, J.M., 2007. Patterns of distribution and traits of Asteraceae forbs along altitudinal gradients in their native and introduced ranges. PhD thesis. ETH Zürich, Zürich.
3. In: Ayad W.G., Hodgkin T., Jaradat A., and Rao V.R. (Eds). Molecular Genetic Techniques for Plant Genetic Resources. Report of an IPGRI Workshop (1997), International Plant Genetic Resources Institute, Rome, Italy 9-11
4. Bailey J.W., and Sinnott E.W. The climatic distribution of certain types of angiosperm leaves. American Journal of Botany 3 (1916) 24-39
5. Beharav A., Ben-David R., Doležalová I., and Lebeda A. Eco-geographical distribution of Lactuca saligna natural populations in Israel. Israel Journal of Plant Science 56 (2008) 195-206
6. Carter R.N., and Prince S.D. A history of the taxonomic treatment of unlobed-leaved prickly lettuce, Lactuca serriola L., in Britain. Watsonia 14 (1982) 59-62
7. Carter R.N., and Prince S.D. The geographical distribution of prickly lettuce (Lactuca serriola), I. A general survey of its habitats and performance in Britain. Journal of Ecology 73 (1985) 27-38
8. Clark A.G., and Lanigan C.M. Prospects for estimating nucleotide divergence with RAPDs. Molecular Biology and Evolution 10 (1993) 1096-1111
9. Cox C.B., and Moore P.D. Biogeography. An Ecological and Evolutionary Approach. 17th ed. (2005), Blackwell Publishing, Oxford, UK
10. D'Andrea L., Broennimann O., Kozlowski G., Guisan A., Morin X., Keller-Senften J., and Felber F. Climate change, anthropogenic disturbance and the northward range expansion of Lactuca serriola (Asteraceae). Journal of Biogeography 36 (2009) 1-15
11. D'Andrea L., van de Wiel C., Meirmans P., Guadagnuolo R., Kozlowski G., den Nijs H., and Felber F. Chapter 2: molecular biogeography of prickly lettuce (L. serriola L.) in Europe based on nuclear microsatellites and chloroplast DNA polymorphism. Ph.D. thesis. In: D'Andrea L. (Ed). Historical and Molecular Biogeography of Prickly Lettuce (L. serriola L.) and Evaluation of Hybridisation with the Crop (L. sativa L.) (2006) 41-68. [cited 15 May 2009]. Available from URL: http://doc.rero.ch/lm.php?url = 1000,40,4, 20060823144601-IC/these_DandreaL_.pdf/
12. Diniz-Filho J.A.F., de Campos Telles M.P., Bonatto S.L., Eizirik E., de Freitas T.R.O., de Marco Jr. P., Santos F.R., Sole-Cava A., and Soares T.N. Mapping the evolutionary twilight zone: molecular markers, populations and geography. Journal of Biogeography 35 (2008) 753-763
13. Doležalová I., Lebeda A., and Křístková E. Prickly lettuce (Lactuca serriola L.) germplasm collecting and distribution study in Slovenia and Sweden. Plant Genetic Resources Newsletter 128 (2001) 41-44
14. Doležalová I., Křístková E., Lebeda A., and Vinter V. Description of morphological characters of wild Lactuca L. spp. genetic resources (English-Czech version). Horticultural Science (Prague) 29 (2002) 56-83
15. Doležalová I., Lebeda A., Janeček J., Číhalíková J., Křístková E., and Vránová O. Variation in chromosome numbers and nuclear DNA contents in genetic resources of Lactuca L. species (Asteraceae). Genetic Resources and Crop Evolution 49 (2002) 383-395
16. Doležalová I., Křístková E., Lebeda A., Vinter V., Astley D., and Boukema I.W. Basic morphological descriptors for genetic resources of wild Lactuca spp. Plant Genetic Resources Newsletter 134 (2003) 1-9
17. Dziechciarková M., Lebeda A., Doležalová I., and Astley D. Characterization of Lactuca spp. germplasm by protein and molecular markers - a review. Plant Soil Environment 50 (2004) 47-58
18. Dziechciarková M., Lebeda A., Doležalová I., and Křístková E. Isozyme variation in European Lactuca serriolagermplasm. In: Vollmann J., Grausgruber H., and Ruckenbauer P. (Eds). Genetic Variation for Plant Breeding. Proceedings of the 17th Eucarpia General Congress, 8-11 September 2004, Tulln, Austria (2004), BOKU-University of Natural Resources and Applied Life Sciences, Vienna, Austria 103-107
19. Felsenstein J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39 (1985) 783-791
20. Feráková V. The Genus Lactuca L. in Europe (1977), Komenský University Press, Bratislava, Czechoslovakia
21. Funk V.A., Bayer R.J., Keeley S., Chan R., Watson L., Gemeinholzer B., Schilling E., Panero J.L., Baldwin B.G., Garcia-Jacas N., Susanna A., and Jansen R.K. Everywhere but Antarctica: using a supertree to understand the diversity and distribution of the Compositae. Biologiske Skrifter Kongelige Danske Videnskabernes Selskat 55 (2005) 343-374
22. Gomulkiewicz R., Drown D.M., Dybdahl M.F., Godsoe W., Nuismer S.L., Pepin K.M., Ridenhour B.J., Smith C.I., and Yoder J.B. Dos and dońts of testing the geographic mosaic theory of coevolution. Heredity 98 (2007) 249-258
23. Goudet J. FSTAT, A Program to Estimate and Test Gene Diversities and Fixation Indices (Version 2.9.3) (2001), University of Lausanne, Lausanne. http://www2.unil.ch/popgen/softwares/fstat.htm/ [cited 15 June 2009]. Available from URL:
24. Halliburton R. Introduction to Population Genetics (2004), Pearson Education Int., Upper Saddle River, New Jersey, USA
25. Hengeveld R. Dynamic Biogeography (1992), Cambridge University Press, Cambridge, UK
26. Hintum Th.J.L., and Boukema I.W. Genetic resources of leafy vegetables. In: Lebeda A., and Křístková E. (Eds). Eucarpia Leafy Vegetables '99. Proceedings of the Eucarpia Meeting on Leafy Vegetables Genetics and Breeding (1999), Palacký University in Olomouc, Czech Republic 59-71
27. Holub E.B. Natural history of Arabidopsis thaliana and oomycete symbioses. European Journal of Plant Pathology 122 (2008) 91-109
28. Hooftman D.A.P., Oostermeijer J.G.B., and den Nijs H.J.C.M. Invasive behaviour of Lactuca serriola (Asteraceae) in the Netherlands: spatial distribution and ecological amplitude. Basic and Applied Ecology 7 (2006) 507-519
29. Hooftman D.A.P., Nieuwenhuis B.P.S., Posthuma K.I., Oostermeijer J.G.B., and den Nijs H.J.C.M. Introgression potential of downy mildew resistance from lettuce to Lactuca serriola and its relevance for plant fitness. Basic and Applied Ecology 8 (2007) 135-146
30. Jansen J., Verbakel H., Peleman J., and van Hintum Th.J.L. A note on the measurement of genetic diversity within genebank accessions of lettuce (Lactuca sativa L.) using AFLP markers. Theoretical and Applied Genetics 112 (2006) 554-561
31. Johnson R.L. A comparison of genetic structuring of yellowcheek darters (Etheostoma moorei) using AFLPs and allozymes. Biochemical Systematics and Ecology 37 4 (2009) 298-303
32. Jones C.J., Edwards K.J., Castaglione S., Winfield M.O., Sala F., van de Wiel C., Bredemeijer G., Vosman B., Matthes M., Daly A., Brettschneider R., Bettini P., Buiatti M., Maestri E., Malcevschi A., Marmiroli N., Aert R., Volckaert G., Rudea J., Linacero R., Vazquez A., and Karp A. Reproducibility testing of RAPD, AFLP and SSR markers in plants by a network of European laboratories. Molecular Breeding 3 (1997) 381-390
33. Kato T. Hybridization between Dianthus superbus var. longicalycinus and D. shinanensis evidenced by resolvable esterase isozymes from herbarium specimens. Annalles Tsukuba Botanical Garden 6 (1987) 9-18
34. Kitner M., Lebeda A., Doležalová I., Maras M., Křístková E., Beharav A., Nevo E., Pavlíček T., and Meglic V. AFLP analysis of Lactuca saligna germplasm collections from four European and three Middle East countries. Israel Journal of Plant Science 56 (2008) 185-193
35. Koopman W.J.M., Zevenbergen M.J., and van den Berg R.G. Species relationships in Lactuca s.l. (Lactuceae, Asteraceae) inferred from AFLP fingerprints. American Journal of Botany 88 (2001) 1881-1887
36. Křístková E., and Lebeda A. Collection of Lactuca spp. genetic resources in the Czech Republic. In: Lebeda A., and Křístková E. (Eds). Eucarpia Leafy Vegetables '99. Proceedings of the Eucarpia Meeting on Leafy Vegetables Genetics and Breeding, Olomouc, Czech Republic (1999), Palacký University Olomouc 109-116
37. Křístková E., Lebeda A., and Doležalová I. Collecting and evaluating of Lactuca serriola germplasm in Europe. In: Swiecicki W., Naganowska B., and Wolko B. (Eds). Broad Variation and Precise Characterization - Limitation for the Future (2001), Eucarpia, Section Genetic Resources, Poznań, Poland 49-52
38. Křístková E., Doležalová I., Lebeda A., Vinter V., and Novotná A. Description of morphological characters of lettuce (Lactuca sativa L.) genetic resources. Horticultural Science (Prague) 35 (2008) 113-129
39. Kuang H., Ochoa O.E., Nevo E., and Michelmore R.W. The disease resistance gene Dm3 is infrequent in natural populations of Lactuca serriola due to deletions and frequent gene conversions at the RGC2locus. The Plant Journal 47 (2006) 38-48
40. Kuang H., van Eck H.J., Sicard D., Michelmore R., and Nevo E. Evolution and genetic population structure of prickly lettuce (Lactuca serriola) and its RGC2 resistance gene cluster. Genetics 178 (2008) 1547-1558
41. Lebeda A., Doležalová I., Křístková E., Vinter V., Vránová O., Doležal K., Tarkowski P., Petrželová I., Trávníček B., Novotný R., and Janeček J. Complex research of taxonomy and ecobiology of wild Lactuca spp. genetic resources. In: Lebeda A., and Křístková E. (Eds). Eucarpia Leafy Vegetables '99. Proceedings of the Eucarpia Meeting on Leafy Vegetables Genetics and Breeding (1999), Palacký University in Olomouc, Olomouc, Czech Republic 117-131
42. Lebeda A., Doležalová I., Křístková E., and Mieslerová B. Biodiversity and ecogeography of wild Lactuca spp. in some European countries. Genetic Resources and Crop Evolution 48 (2001) 153-164
43. Lebeda A., Doležalová I., and Astley D. Representation of wild Lactuca spp. (Asteraceae, Lactuceae) in world genebank collections. Genetic Resources and Crop Evolution 51 (2004) 167-174
44. Lebeda A., Doležalová I., Feráková V., and Astley D. Geographical distribution of wild Lactuca spp. (Asteraceae, Lactuceae). The Botanical Review 70 (2004) 328-356
45. Lebeda A., Doležalová I., Křístková E., Dehmer K.J., Astley D., van de Wiel C.C.M., and van Treuren R. Acquisition and ecological characterization of Lactuca serriola L. germplasm collected in the Czech Republic, Germany, the Netherlands and United Kingdom. Genetic Resources and Crop Evolution 54 (2007) 555-562
46. Lebeda A., Doležalová I., Křístková E., and Novotná E. Comparative study of variation of some morphological characteristics of Lactuca serriola germplasm collected in central Europe (Czech Republic) and the British Isles (England, U.K.). In: Bullitta S. (Ed). Plant Genetic Resources of Geographical and Other Islands (Conservation, Evaluation and Use for Plant Breeding). Proceedings of the XVII Eucarpia Genetic Resources Section Meeting; 30 March - 2 April 2005, Castelsardo (Italy) (2007), CNR-ISPAAM sez. Sassari Publisher, Sassari, Italy 95-96 (Abstract)
47. Lebeda A., Ryder E.J., Grube R., Doležalová I., and Křístková E. Lettuce (Asteraceae; Lactuca spp.), (Chapter 9). In: Singh R. (Ed). Genetic Resources, Chromosome Engineering, and Crop Improvement Series. Vegetable Crops vol. 3 (2007), CRC Press, Boca Raton, FL, USA 377-472
48. Lebeda A., Petrželová I., and Maryška Z. Structure and variation in the wild-plant pathosystem: Lactuca serriola - Bremia lactucae. European Journal of Plant Pathology 122 (2008) 127-146
49. Lebeda A., Sedlářová M., Petřivalský M., and Prokopová J. Diversity of defence mechanisms in plant-oomycete interactions: a case study of Lactuca spp. and Bremia lactucae. European Journal of Plant Pathology 122 (2008) 71-89
50. Lebeda A., Doležalová I., Křístková E., Kitner M., Petrželová I., Mieslerová B., and Novotná A. Wild Lactuca germplasm for lettuce breeding: current status, gaps and challenges. Euphytica (2009) 10.1007/s10681-009-9914-7
51. Lindqvist K. Inheritance of lobed leaf form in Lactuca. Hereditas 44 (1958) 347-377
52. Lindqvist K. On the origin of cultivated lettuce. Hereditas 46 (1960) 319-350
53. Miller M.P. Tools for Population Genetic Analyses (TFPGA), Version 1.3 (1997), Department of Biological Sciences, Northern Arizona University, Flagstaff, AZ, USA. http://www.marksgeneticsoftware.net/tfpga.htm [cited 15 June 2009]. Available from URL:
54. Mizutani T., and Tanaka T. Genetic analyses of isozyme in lettuce, Lactuca sativa, and its relatives. Journal of Japanese Society for Horticultural Science 72 (2003) 122-127
55. Mou B. Lettuce. In: Prohens J., and Nuez F. (Eds). Handbook of Plant Breeding. Vegetables I. Asteraceae, Brassicaceae, Chenopodiaceae, and Cucurbitaceae (2008), Springer Science, New York 75-116
56. Nei M., and Li W.H. Mathematical-model for studying genetic-variation in terms of restriction endonucleases. Proceedings of the National Academy of Sciences of United States of America 76 (1979) 5269-5273
57. Nei M. Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics 89 (1978) 583-590
58. Nei M. Molecular Evolutionary Genetics (1987), Columbia University Press, New York
59. Nevo E. Genetic diversity in nature: patterns and theory. Evolutionary Biology 23 (1988) 217-247
60. Pavlíček B.A., Hrda S., and Flegr J. FreeTree - Freeware program for construction of phylogenetic trees on the basis of distance data and bootstrap/jackknife analysis of the tree robustness, Application in the RAPD analysis of the genus Frenkelia. Folia Biologica 45 (1999) 97-99. [cited 15 June 2009]. Available from URL: http://www.natur.cuni.cz/∼flegr/programs/freetree.htm
61. Peakall R., and Smouse P.E. GENALEX 6: genetic analysis in Excel. Population genetic software for teaching and research. Molecular Ecology Notes 6 (2006) 288-295
62. Peckert T., Chrtek J., and Plačková I. Genetic variation in agamospermous populations of Hieracium echioides in southern Slovakia and northern Hungary (Danube basin). Preslia 77 (2005) 307-315
63. Petrželová I., and Lebeda A. Occurrence of Bremia lactucae in natural populations of Lactuca serriola. Journal of Phytopathology 152 (2004) 391-398
64. Pink D.A.C., and Keane E.M. Lettuce, Lactuca sativa. In: Kalloo G., and Bergh B.O. (Eds). Genetic Improvement of Vegetable Crops (1993), Pergamon Press, Oxford, U.K. 543-571
65. Prince S.D., and Carter R.N. Prickly lettuce (Lactuca serriola L.) in Britain. Watsonia 11 (1977) 331-338
66. Prince S.D., and Carter R.N. The geographical distribution of prickly lettuce (Lactuca serriola L.). III. Its performance in transplant sites beyond its distribution limit in Britain. Journal of Ecology 73 (1985) 49-64
67. Prince S.D., Carter R.N., and Dancy K.J. The geographical distribution of prickly lettuce (Lactuca serriola). II. Characteristics of populations near its distribution limit in Britain. Journal of Ecology 73 (1985) 39-48
68. Rohlf F.J. NTSYS-pc. Numerical Taxonomy and Multivariate Analysis System (1998), Applied Biostatatistics, New York, USA
69. Ryder E.J. Lettuce, Endive and Cichory (1999), CABI Publishing, Wallingford, U.K
70. Sagarin R.D., and Gaines S.D. The "abundant centre" distribution: to what extent is it a biogeographical rule?. Ecology Letters 5 (2002) 137-147
71. Thompson J.N. Specific hypotheses on the geographic mosaic of coevolution. The American Naturalist 153 (1999) S1-S14
72. Vallejos C.E. Enzyme activity staining. In: Tanksley S.D., and Orton T.J. (Eds). Isozymes in Plant Genetics and Breeding (1983), Elsevier, Amsterdam, The Netherlands 469-516
73. van der Beek J.G., Verkerk R., Zabel P., and Lindhout P. Mapping strategy for resistance genes in tomato based on RFLPs between cultivars: Cf-9 (resistance to Cladosporium fulvum) on chromosome I. Theoretical and Applied Genetics 84 (1992) 106-112
74. van der Maesen L.J.G. Systematics of crop-weed complexes. Acta Botanica Neerlandica 43 (1994) 78-79
75. van der Pijl L. Principles of Dispersal in Higher Plants. third ed. (1982), Springer-Verlag, Berlin
76. Vekemans X., Beauwens T., Lemaire M., and Roldan-Ruiz I. Data from amplified fragment length polymorphism (AFLP) markers show indication of size homoplasy and of a relationship between degree of homoplasy and fragment size. Molecular Ecology 11 (2002) 139-151
77. Vincent P. The Iogeography of the British Isles. An Introduction (1990), Routledge, London
78. Vos P., Hogers R., Bleeker M., Reijans M., van de Lee T., Hornes M., Frijters A., Pot J., Peleman J., Kuiper M., and Zabeau M. AFLP: a new technique for DNA fingerprinting. Nucleic Acids Research 23 (1995) 4407-4414
79. Weaver S.E., and Downs M.P. The biology of Canadian weeds. 122. Lactuca serriola L. Canadian Journal of Plant Science 83 (2003) 619-628
80. Werk K.S., and Ehleringer J. Non-random leaf orientation in Lactuca serriola L. Plant Cell Environment 7 (1984) 81-87