Quantitative optoacoustic signal extraction using sparse signal representation

IEEE Transactions on Medical Imaging

Volumn 28, Issue 12, 2009, Pages 1997-2006

  Rosenthal, Amir ^a   Razansky, Daniel ^a   Ntziachristos, Vasilis ^a  

^a TECHNICAL UNIVERSITY OF MUNICH   (Germany)

Author keywords

Imaging; Inverse problems; Optoacoustics; Photoacoustics; Sparse representations; Tomography

Indexed keywords

ABSORPTION COEFFICIENTS; EXPERIMENTAL PARAMETERS; EXPLICIT KNOWLEDGE; ILLUMINATION CONDITIONS; ILLUMINATION GEOMETRY; ILLUMINATION SYSTEM; LIGHT TRANSPORT; MULTI-SPECTRAL; OPTICAL ENERGY; OPTO-ACOUSTICS; OPTOACOUSTIC SIGNALS; OPTOACOUSTIC TOMOGRAPHY; PHOTOACOUSTICS; PHOTON DENSITIES; PRACTICAL IMPLEMENTATION; ROBUST PERFORMANCE; SPARSE REPRESENTATION; SPARSE REPRESENTATIONS; SPARSE SIGNAL REPRESENTATION; SPATIAL CHARACTERISTICS; TOMOGRAPHIC; TOMOGRAPHIC RECONSTRUCTION; WHOLE-BODY IMAGING;

ABSORPTION; DIFFERENTIAL EQUATIONS; IMAGE PROCESSING; INVERSE PROBLEMS; OPTICAL PROPERTIES; SIGNAL PROCESSING; TOMOGRAPHY;

PHOTOACOUSTIC EFFECT;

ALGORITHM; ARTICLE; COMPUTER ASSISTED DIAGNOSIS; ELASTOGRAPHY; IMAGE ENHANCEMENT; METHODOLOGY; REPRODUCIBILITY; SENSITIVITY AND SPECIFICITY; SIGNAL PROCESSING; THREE DIMENSIONAL IMAGING; TOMOGRAPHY;

ALGORITHMS; ELASTICITY IMAGING TECHNIQUES; IMAGE ENHANCEMENT; IMAGE INTERPRETATION, COMPUTER-ASSISTED; IMAGING, THREE-DIMENSIONAL; REPRODUCIBILITY OF RESULTS; SENSITIVITY AND SPECIFICITY; SIGNAL PROCESSING, COMPUTER-ASSISTED; TOMOGRAPHY;

EID: 72249094966     PISSN: 02780062     EISSN: None     Source Type: Journal    
DOI: 10.1109/TMI.2009.2027116     Document Type: Article

References (24)

1. X. Wang, Y. Pang, G. Ku, X. Xie, G. Stoica, and L. H. V. Wang, "Noninvasive laser-induced photoacoustic tomography for structural and functional in vivo imaging of the brain," Nat. Biotechnol., vol.21, pp. 803-806, 2003.
2. D. Razansky and V. Ntziachristos, "Hybrid photoacoustic molecular tomography using finite-element-based inversion," Med. Phys., vol.34, pp. 4293-4301, Nov. 2007.
3. R. A. Kruger, W. L. Kiser, D. R. Reinecke, G. A. Kruger, and K. D. Miller, "Thermoacoustic optical molecular imaging of small animals," Mol. Imag., vol.2, pp. 113-123, 2003.
4. R. I. Siphanto, K. K. Thumma, R. G. M. Kolkman, T. G. van Leeuwen, F. F. M. de Mul, J. W. van Neck, L. N. A. van Adrichem, and W. Steen-bergen, "Serial noninvasive photoacoustic imaging of neovasculariza-tion in tumor angiogenesis," Opt. Expr., vol.13, pp. 89-95, 2005.
5. J. Laufer, D. Delpy, C. Elwell, and P. Beard, "Quantitative spatially resolved measurement of tissue chromophore concentrations using pho-toacoustic spectroscopy: Application to the measurement of blood oxy-genation and haemoglobin concentration," Phys. Med. Biol., vol.52, pp. 141-168, 2007.
6. Y. Wang, X. Xie, X. Wang, G. Ku, K. L. Gill, D. P. O'Neal, G. Stoica, and L. V. Wang, "Photoacoustic tomography of a nanoshell contrast agent in the in vivo rat brain," Nano Lett., vol.4, pp. 1689-1692, Sep. 2004. (Pubitemid 39297446)
7. D. Razansky, C. Vinegoni, and V. Ntziachristos, "Multispectral pho-toacoustic imaging of fluorochromes in small animals," Opt. Lett., vol.32, pp. 2891-2893, 2007.
8. D. Razansky et al., ""Multi-spectral optoacoustic tomography of deep-seated fluorescent proteins in-vivo," Nature Photon., vol. 3, no. 7, Jul. 2009.
9. B. T. Cox, S. R. Arridge, K. P. Kostli, and P. C. Beard, "2D quantitative photoacoustic image reconstruction of absorption distributions in scattering media using a simple iterative method," Appl. Opt., vol.45, pp. 1866-1875, 2006.
10. B. T. Cox, S. R. Arridge, and P. C. Beard, "Gradient-based quantitative photoacoustic image reconstruction for molecular imaging," Proc. SPIE, vol.6437, pp. 64371T-1-10, 2007.
11. T. Jetzfellner et al., ""Performance of iterative optoacoustic tomography with experimental data," Appl. Phys. Lett., vol. 95, no. 1, Jul. 2009.
12. M. Lustig, D. Donoho, and J. M. Pauly, "Sparse MRI: The application of compressed sensing for rapid MR imaging," Magn. Reson. Med., vol.58, pp. 1182-1195, Dec. 2007.
13. M. Schweiger, S. Arridge, M. Hiraoka, and D. Delpy, "The finite element method for the propagation of light in scattering media: Boundary and source conditions," Med. Phys., vol.22, pp. 1779-1792, 1995.
14. S. S. Chen, D. L. Donoho, and M. A. Sauders, "Atomic decomposition by basis pursuit," SIAM Rev., vol.43, pp. 129-159, 2001.
15. M. Elad and M. Aharon, "Image denoising via sparse and redundant representations over learned dictionaries," IEEE Trans. Image Process., vol.15, no.12, pp. 3736-3745, Dec. 2006. (Pubitemid 44811686)
16. E. J. Candes, L. Demanet, D. L. Donoho, and L. Ying, "Fast discrete curvelet transforms," Multiscale Model. Simul., vol.5, pp. 861-899, 2005.
17. Y. C. Pati, R. Rezaiifar, and P. S. Krishnaprasad, "Orthogonal matching pursuit: Recursive function approximation withapplications to wavelet decomposition," in Conf. Rec. 27th Asilomar Conf. Signals, Syst., Comput., Pacific Grove, CA, 1993, pp. 40-44.
18. G. H. Golub and C. F. Van Loan, Matrix Computation, 3rd ed. Baltimore, MD: Johns Hopkins Univ. Press, 1996.
19. N. Hurley and S. Rickard, "Comparing measures of sparsity," in Proc. IEEE Workshop Machine Learning Signal Process., 2008, pp. 55-60.
20. P. C. Hansen and D. P. O'Leary, "The use of the l-curve in the regular-ization of discrete ill-posed problems," SIAM J. Sci. Comput., vol.14, pp. 1487-1503, 1993.
21. M. J. Niedre, G. M. Turner, and V. Ntziachristos, "Time-resolved imaging of optical coefficients through murine chest cavities," J. Biomed. Opt., vol.11, p. 064017, 2006.
22. A. Kienle, L. Lilge, M. S. Patterson, R. Hibst, R. Steiner, and B. C. Wilson, "Spatially resolved absolute diffuse reflectance measurements for noninvasive determination of the optical scattering and absorption coefficients of biological tissue," Appl. Opt., vol.35, pp. 2304-2314, 1996.
23. M. Xu and L. V. Wang, "Universal back-projection algorithm for pho-toacoustic computed tomography," Phys. Rev. E, vol.71, p. 016706, 2005.
24. M. Elad and A. M. Bruckstein, "A Generalized uncertainty principle and sparse representation in pairs of bases," IEEE Trans. Inf. Theory, vol.48, no.9, pp. 2558-2567, Sep. 2002.