Outside the unusual cell wall of the hyperthermophilic archaeon Aeropyrum pernix K1

Molecular and Cellular Proteomics

Volumn 8, Issue 11, 2009, Pages 2570-2581

  Palmieri, Gianna ^a   Cannio, Raffaele ^a   Fiume, Immacolata ^a   Rossi, Mosé ^b   Pocsfalvi, Gabriella ^a  

^a CNR   (Italy)

^b UNIVERSITY OF NAPLES FEDERICO II   (Italy)

Author keywords

[No Author keywords available]

Indexed keywords

ABC TRANSPORTER; ADENOSINE TRIPHOSPHATASE; BACTERIAL PROTEIN; CARRIER PROTEIN; CELL SURFACE PROTEIN; COTRANSPORTER; PROTEOME; SIGNAL PEPTIDE;

AEROPYRUM; ARTICLE; BACTERIAL CELL WALL; HYPERTHERMOPHILIC ARCHAEON; NONHUMAN; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEOMICS;

AEROPYRUM; ARCHAEA; CELL MEMBRANE; CELL WALL; CHROMATOGRAPHY, HIGH PRESSURE LIQUID; ELECTROPHORESIS, POLYACRYLAMIDE GEL; GRAM-NEGATIVE BACTERIA; GRAM-POSITIVE BACTERIA; OPEN READING FRAMES; PROTEIN BINDING; PROTEOME; PROTEOMICS; SPECTROMETRY, MASS, ELECTROSPRAY IONIZATION; SURFACE PROPERTIES; TANDEM MASS SPECTROMETRY;

AEROPYRUM; AEROPYRUM PERNIX; ARCHAEA; BACTERIA (MICROORGANISMS); EUKARYOTA; NEGIBACTERIA; POSIBACTERIA;

EID: 72149121349     PISSN: 15359476     EISSN: None     Source Type: Journal    
DOI: 10.1074/mcp.M900012-MCP200     Document Type: Article

References (42)

1. Woese, C. R., Kandler, O., and Wheelis, M. L. (1990) Towards a natural system of organisms: proposal for the domains archaea, bacteria, and eucarya. Proc. Natl. Acad. Sci. U.S.A. 87, 4576-4579
2. Brochier-Armanet, C., Boussau, B., Gribaldo, S., and Forterre, P. (2008) Mesophilic crenarchaeota: proposal for a third archaeal phylum, the thaumarchaeota. Nat. Rev. Microbiol. 6, 245-252
3. Koga, Y., and Morii, H. (2007) Biosynthesis of ether-type polar lipids in archaea and evolutionary considerations. Microbiol. Mol. Biol. Rev. 71, 97-120
4. Sára, M., and Sleytr, U. B. (2000) S-layer proteins. J. Bacteriol. 182, 859-868
5. Engelhardt, H. (2007) Are S-layers exoskeletons? The basic function of protein surface layers revisited. J. Struct. Biol. 160, 115-124
6. Eichler, J. (2003) Facing extremes: archaeal surface-layer (glyco)proteins. Microbiology 149, 3347-3351
7. Schäffer, C., and Messner, P. (2004) Surface-layer glycoproteins: an example for the diversity of bacterial glycosylation with promising impacts on nanobiotechnology. Glycobiology 14, 31R-42R (Pubitemid 39161973)
8. Näther, D. J., Rachel, R., Wanner, G., and Wirth, R. (2006) Flagella of Pyrococcus furiosus: multifunctional organelles, made for swimming, adhesion to various surfaces, and cell-cell contacts. J. Bacteriol. 188, 6915-6923 (Pubitemid 44497904)
9. Moissl, C., Rachel, R., Briegel, A, Engelhardt, H., and Huber, R. (2005) The unique structure of archaeal hami, highly complex cell appendages with nano-grappling hooks. Mol. Microbiol. 56, 361-370
10. Albers, S. V., Szabó, Z., and Driessen, A. J. (2006) Protein secretion in the archaea: multiple paths towards a unique cell surface. Nat. Rev. Microbiol. 4, 537-547
11. Szabó, Z., Stahl, A. O., Albers, S. V., Kissinger, J. C., Driessen, A. J., and Pohlschröder, M. (2007) Identification of diverse archaeal proteins with class III signal peptides cleaved by distinct archaeal prepilin peptidases. J. Bacteriol. 189, 772-778
12. Pohlschröder, M., Giménez, M. I., and Jarrell, K. F. (2005) Protein transport in archaea: Sec and twin arginine translocation pathways. Curr. Opin. Microbiol. 8, 713-719
13. Ng, S. Y., Chaban, B., VanDyke, D. J., and Jarrell, K. F. (2007) Archaeal signal peptidases. Microbiology 153, 305-314
14. Bardy, S. L., Eichler, J., and Jarrell, K. F. (2003) Archaeal signal peptides - a comparative survey at the genome level. Protein Sci. 12, 1833-1843 (Pubitemid 37022806)
15. Saleh, M., Song, C., Nasserulla, S., and Leduc, L. G. (2009) Indicators from archaeal secretomes. Microbiol. Res., Epub ahead of print, PubMed PMID: 18407482
16. Albers, S. V., Koning, S. M., Konings, W. N., and Driessen, A. J. (2004) Insights into ABC transport in archaea. J. Bioenerg. Biomembr. 36, 5-15
17. Sako, Y., Nomura, N., Uchida, A., Ishida, Y., Morii, H., Koga, Y., Hoaki, T., and Maruyama, T. (1996) Aeropyrum pemix gen. nov., sp. nov., a novel aerobic hyperthermophilic archaeon growing at temperatures up to 100 degrees C. Int. J. Syst. Bacteriol. 46, 1070-1077
18. - 18. Moril, H., Yagl, H., Akutsu, H., Nomura, N., Sako, Y., and Koga, Y. (1999) A novel phosphoglycolipid archaetidyl(glucosyl)inositol with two sesterterpanyl chains from the aerobic hyperthermophilic archaeon Aeropyrum pernix K1. Biochim. Biophys. Acta 1436, 426-436
19. Yamazaki, S., Yamazaki, J., Nishijima, K., Otsuka, R., Mise, M., Ishikawa, H., Sasaki, K., Tago, S., and Isono, K. (2006) Proteome analysis of an aerobic hyperthermophilic crenarchaeon, Aeropyrum pernix K1. Mol. Cell. Proteomics 5, 811-823
20. Laemmli, U. K. (1970) Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227, 680-685
21. Shevchenko, A, Wilm, M., Vorm, O., and Mann, M. (1996) Mass spectrometric sequencing of proteins silver-stained polyacrylamide gels. Anal. Chem. 68, 850-858
22. Keller, A, Nesvizhskii, A. I., Kolker, E., and Aebersold, R. (2002) Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search. And. Chem. 74, 5383-5392
23. Bendtsen, J. D., Nielsen, H., von Heijne, G., and Brunak, S. (2004) Improved prediction of signal peptides: SignalP 3.0. J. Mol. Biol. 340, 783-795
24. Bendtsen, J. D., Kiemer, L., Fausbøll, A., and Brunak, S. (2005) Non-classical protein secretion in bacteria. BMC Microbiol. 5, 58 (Pubitemid 41561577)
25. Bendtsen, J. D., Nielsen, H., Widdick, D., Palmer, T., and Brunak, S. (2005) Prediction of twin-arginine signal peptides. BMC Biolinformatics 6, 167
26. Juncker, A. S., Willenbrock, H., Von Heijne, G., Brunak, S., Nielsen, H., and Krogh, A. (2003) Prediction of lipoprotein signal peptides in Gram-negative bacteria. Protein Sci. 12, 1652-1662 (Pubitemid 36910046)
27. Krogh, A., Larsson, B., von Heijne, G., and Sonnhammer, E. L. (2001) Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J. Mol. Biol. 305, 567-580
28. Gardy, J. L., Laird, M. R., Chen, F., Rey, S., Walsh, C. J., Ester, M., and Brinkman, F. S. L. (2005) PSORTb v. 2.0: Expanded prediction of bacterial protein subcellular localization and insights gained from comparative proteome analysis. Bioinformatics 21, 617-623
29. Rose, R. W., Brüser, T., Kissinger, J. C., and Pohlschröder, M. (2002) Adaptation of protein secretion to extremely high-salt conditions by extensive use of the twin-arginine translocation pathway. Mol. Microbiol. 45, 943-950
30. Mulkidjanian, A. Y., Makarova, K. S., Galperin, M. Y., and Koonin, E. V. (2007) Inventing the dynamo machine: the evolution of the F-type and V-type ATPases. Nat. Rev. Microbiol. 5, 892-899
31. vanden Hoven, R. N., and Santini, J. M. (2004) Arsenite oxidation by the heterotrophy hydrogenophaga sp. str. NT-14: the arsenite oxidase and its physiological electron acceptor. Biochim. Biophys. Acta 1656, 148-155
32. Cabello, P., Roldán, M. D., and Moreno-Vivián, C. (2004) Nitrate reduction and the nitrogen cycle in archaea. Microbiology 150, 3527-3546 (Pubitemid 39545304)
33. Ring, G., and Eichler, J. (2004) In the archaea Haloferax volcanii, membrane protein biogenesis and protein synthesis rates are affected by decreased ribosomal binding to the translocon. J. Biol. Chem. 279, 53160-53166
34. Bisle, B., Schmidt, A., Scheibe, B., Klein, C., Tebbe, A., Kellermann, J., Siedler, F., Pfeiffer, F., Lottspeich, F., and Oesterhelt, D. (2006) Quantitative profiling of the membrane proteome in a halophilic archaeon. Mol. Cell. Proteomics 5, 1543-1558
35. Son, H. J., Shin, E. J., Nam, S. W., Kim, D. E., and Jeon, S. J. (2007) Properties of the α subunit of a chaperonin from the hyperthermophilic crenarchaeon Aeropyrum pernix K1. FEMS Microbiol. Lett. 266, 103-109
36. Trent, J. D., Kagawa, H. K., Paavola, C. D., McMillan, R. A., Howard, J., Jahnke, L., Lavin, C., Embaye, T., and Henze, C. E. (2003) Intracellular localization of a group II chaperonin indicates a membrane-related function. Proc. Natl. Acad. Sci. U.S.A. 100, 15589-15594
37. Pocsfalvl, G., Cacace, G., Cuccurullo, M., Serluca, G., Sorrentino, A., Schlosser, G., Blaiotta, G., and Malomi, A. (2008) Proteomic analysis of exoproteins expressed by enterotoxigenic Staphylococcus aureus strains. Proteomics 8, 2462-2476
38. Halio, S. B., Blumentals, I. I., Short, S. A., Merrill, B. M., and Kelly, R. M. (1996) Sequence, expression in Escherichia coli, and analysis of the gene encoding a novel intracellular protease (Pfpl) from the hyperthermophilic archaeon Pyrococcus furiosus. J. Bacteriol. 178, 2605-2612
39. Catara, G., Ruggiero, G., La Cara, F., Digilio, F. A., Capasso, A., and Rossi, M. (2003) A novel extracellular subtilisin-like protease from the hyperthermophile Aeropyrum pernix K1: biochemical properties, cloning, and expression. Extremophiles 7, 391-399 (Pubitemid 41512718)
40. Ishikawa, K., Ishida, H., Koyama, Y., Kawarabayasi, Y., Kawahara, J., Matsui, E., and Matsui, I. (1998) Acylamino acid-releasing enzyme from the thermophilic archaeon Pyrococcus horikoshii. J. Biol. Chem. 273, 17726-17731
41. Kawarabayasi, Y., Hino, Y., Horikawa, H., Yamazaki, S., Haikawa, Y., Jin-no, K., Takahashi, M., Sekine, M., Baba, S., Ankai, A., Kosugi, H., Hosoyarna, A., Fukui, S., Nagai, Y., Nishijima, K., Nakazawa, H., Takamiya, M., Masuda, S., Funahashi, T., Tanaka, T., Kudoh, Y., Yamazaki, J., Kushida, N., Oguchi, A., Aoki, K., Kubota, K., Nakamura, Y., Nomura, N., Sako, Y., and Kikuchi, H. (1999) Complete genome sequence of an aerobic hyperthermophilic crenarchaeon, Aeropyrum pernix K1. DNA Res. 6, 83-101, 145-152
42. Ren, Q., Chen, K., and Paulsen, I. T. (2007) TransportDB: a comprehensive database resource for cytoplasmic membrane transport systems and outer membrane channels. Nucleic Acids Res. 35, D274-D279 (Pubitemid 46056214)