Variations of Single Nucleotide Polymorphism (SNP) of Hordoindoline a Gene (hina) and Its Relationships with Kernel Hardness in 92 North American Barley Varieties (Hordeum vulgare L.)

Agricultural Sciences in China

Volumn 8, Issue 12, 2009, Pages 1440-1447

  CHEN, Guo yue ^a   YANG, Shi dong ^a   LI, Wei tao ^a   LI, Wei ^a   WEI, Yu ming ^a   ZHENG, You liang ^a  

^a SICHUAN AGRICULTURAL UNIVERSITY   (China)

Author keywords

barley; haplotype; hardness; Hordoindoline a gene; SNP

Indexed keywords

HORDEUM; HORDEUM VULGARE SUBSP. VULGARE; TRITICUM AESTIVUM;

EID: 72149101905     PISSN: 16712927     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1671-2927(08)60357-0     Document Type: Article

References (35)

1. Allison M.J., Cowe I.A., and McHale R. A rapid test for the prediction of malting quality of barley. Journal of the Institute of Brewing 82 (1976) 166-167
2. Alison M.J. Relationships between milling energy and hot water extract values of malts from some modern barley and their parental cultivars. Journal of the Institute of Brewing 92 (1986) 604-607
3. Baker R.J. Inheritance of kernel hardness in spring wheat. Crop Science 17 (1977) 960-962
4. Beecher B., Bowman J., Martin J.M., Bettge A.D., Morris C.F., Blake T.K., and Giroux M.J. Hordoindolines are assciated with a major endosperm-texture QTL in barley (Hordeum vulgare). Genome 45 (2002) 584-591
5. Beecher B., Smidansky E.D., See D., Blake T.K., and Giroux M.J. Mapping and sequence analysis of barley hordoindolines. Theoretical and Applied Genetics 102 (2001) 833-840
6. Brennan C.S., Harris N., Smith D., and Shewry P.R. Structural differences in the mature endosperms of good and poor malting barley cultivars. Journal of Cereal Science 24 (1996) 171-177
7. Caldwell K.S., Langridge P., and Powelll W. Comparative sequence analysis of the region harbouring the hardness locus in barley and its collinear region in rice 1. Plant Physiology 136 (2004) 3177-3190
8. Caldwell K.S., Russell J., Langridge P., and Powell W. Extreme population-dependent linkage disequilibrium detected in an inbreeding plant species, Hordeum vulgare. Genetics 172 (2006) 557-567
9. Campbell J.B., Martin J.M., Crutcher F., Meyer F.D., Clark D.R., and Giroux M.J. Effects on soft wheat (Triticum aestivum L.) quality of increased Puroindoline dosage. Cereal Chemistry 84 (2007) 80-89
10. Darlington H.F., and Palmer G.H. Homogeneity of the friable flour of malting barley. Journal of the Institute of Brewing 102 (1992) 179-182
11. Darlington H.F., Rouster J., Hoffman L., Halford N.G., Shewery P.R., and Simpson D.J. Identification and molecular characterization of hordoindolines from barley grain. Plant Molecular Biology 47 (2001) 785-794
12. Fox G.P., Nguyen L., and Bowan J. Relationship between hardness genes and quality in barley (Hordeum vulgare). Journal of the Institute of Brewing 113 (2007) 87-95
13. Fox G.P., Osborne B., Bowman J., Kellyd A., Cakire M., Poulsenf D., Inkermana A., and Henryg R. Measurement of genetic and environmental variation in barley (Hordeum vulgare) grain hardness. Journal of Cereal Science 46 (2007) 82-92
14. Giroux M.J., and Morris C.F. A glycine to serine change in puroindoline b is associated with wheat grain hardness and low levels of starch-surface friabilin. Theoretical and Applied Genetics 95 (1997) 857-864
15. Giroux M.J., and Morris C.F. Wheat grain hardness results from highly conserved mutations in the frabilin components, puroindoline a and b. Proceedings of National Academ of Sciecnces of the USA 95 (1998) 6262-6266
16. Giroux M.J., Talbert L., Habernicht D.K., Lanning S., Hemphill A., and Martin J.M. Association of puroindoline sequence type and grain hardness in hard red spring wheat. Crop Science 40 (2000) 370-374
17. Ikeda T.M., Ohnishi N., Nagamine T., Oda S., Hisatomi T., and Yano H. Identification of new puroindoline genotypes and their relationship to flour texture among wheat cultivars. Journal of Cereal Science 41 (2005) 1-6
18. Koliatsou M., and Palmer G.H. A new method to assess mealiness and steeliness of barley varieties and relationship of mealiness with malting parameters. Journal of the American Society of Brewing Chemists 61 (2003) 114-118
19. Kumar S., Tamura K., and Nei M. MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5 (2004) 150-163
20. Lee M.S., Jang C.S., Lee S.S., Kim J.Y., Lee B.M., Seong R.C., and Seo Y.W. Hordoindolines are predominantly expressed in the aleurone layer in late kernel development in barley. Breeding Science 56 (2006) 63-68
21. Lillemo M., and Morris C.F. A leucine to proline mutation in puroindoline b is frequently present in hard wheats from northern Europe. Theoretical and Applied Genetics 100 (2000) 1100-1107
22. MacRitchie F. Physicochemical aspects of some problems in wheat research. In: Pomeranz Y. (Ed). Advances in Cereal Science and Technology vol. 3 (1980), American Association of Cereal Chemistry, St. Paul, MN 271-326
23. Massa A.N., and Morris C.F. Molecular evolution of the puroindoline-a, puroindoline-b, and grain softness protein-1 genes in the Tribe Triticeae. Journal of Molecular Evolution 63 (2006) 526-536
24. Mather D.E., Tinker N.A., LaBerge D.E., Edney M., Jones B.L., Rossnagel B.G., Legge W.G., Briggs K.G., Irvine R.B., Falk D.E., and Kasha K.J. Regions of the genome that affect grain and malt quality in a North American two-row barley cross. Crop Science 37 (1997) 544-554
25. Mestres C., and Matencio F. Biochemical basis of kernel milling characteristics and endosperm vitreousness of maize. Journal of Cereal Science 24 (1992) 283-290
26. Miller S.S., and Fulcher R.G. Distribution of (1-3)(1-4)-[.beta]-D-glucan in kernels of oats and barley using micro spectrofluorometry. Cereal Chemistry 71 (1994) 64-68
27. Naes T., Isaksson T., Fearn T., and Davies T. A user-friendly guide to multivariate calibration and classification (2002), NIR Publications, Chichester, UK
28. Newton C.R., Graham L.E., Heptinstall L.E., Powell S.J., Summers C., Kalsheker N., Smith J.C., and Markham A.F. Analysis of any point mutation in DNA. The amplification refractory mutation system (ARMS). Nucleic Acids Research 17 (1989) 2503-2516
29. Pomeranz Y., and Williams P.C. Wheat hardness: its genetic, structural and biochemical background, measurement and significance. In: Pomeranz Y. (Ed). Advances in Cereal Science and Technology vol. 10 (1990), American Association of Cereal Chemistry, St. Paul, Minneapolis 471-548
30. Rouvès S., Boeuf C., Zwickert-Menteur S., Gautier M.F., Joudrier P., Nelson J.C., Bernard M., and Jestin L. Locating supplementary RFLP markers on barley chromosome 7 and synteny with homoeologous wheat group 5. Plant Breeding 115 (1996) 511-513
31. Symes K.J. The inheritance of grain hardness in wheat as measured by the particle size index. Australian Journal of Agricultural Research 16 (1965) 113-123
32. Suzanne E.C., Patrick M.H., and Cynthia A.H. Effects of single nucleotide polymorphisms in [.beta]-amylase 1 alleles from barley on functional properties of the enzymes. Plant Physiology and Biochemistry 41 (2003) 798-804
33. Thomas W.T.B., Powell W., Swanston J.S., Ellis R.P., Chamlers K.J., Barua U.M., Jack P., Lea V., Forster B.P., and Waugh R. Quantitative trait loci for germination and malting quality characters in a spring barley cross. Crop Science 36 (1996) 265-273
34. Turnbull K.M., and Rahman S. Endosperm texture in wheat. Journal of Cereal Science 36 (2002) 327-337
35. Yan Z., Wan Y., Liu K., Zheng Y.L., and Wang D.W. Identification of a novel HMW glutenin subnit and comparison of its amino acid sequence with those of homologous subunits. Chinese Science Bulletin 47 (2002) 220-225 (in Chinese)