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Volumn 73, Issue 3, 2010, Pages 579-592

Pre-analytical factors in clinical proteomics investigations: Impact of ex vivo protein modifications for multiple sclerosis biomarker discovery

Author keywords

Clinical Proteomics; MALDI TOF MS; Mass spectrometry; Neurodegenerative disease; Pre analytical validation

Indexed keywords

APOLIPOPROTEIN A4; COMPLEMENT COMPONENT C3; HEMOGLOBIN A; HEMOGLOBIN BETA CHAIN; PREALBUMIN;

EID: 72149090132     PISSN: 18743919     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jprot.2009.07.014     Document Type: Article
Times cited : (42)

References (45)
  • 1
    • 0001644020 scopus 로고    scopus 로고
    • The human plasma proteome: history, character, and diagnostic prospects
    • Anderson N.L., and Anderson N.G. The human plasma proteome: history, character, and diagnostic prospects. Mol Cell Proteomics 1 11 (2002) 845-867
    • (2002) Mol Cell Proteomics , vol.1 , Issue.11 , pp. 845-867
    • Anderson, N.L.1    Anderson, N.G.2
  • 3
    • 2542640080 scopus 로고    scopus 로고
    • Mass spectrometry as a diagnostic and a cancer biomarker discovery tool: opportunities and potential limitations
    • Diamandis E.P. Mass spectrometry as a diagnostic and a cancer biomarker discovery tool: opportunities and potential limitations. Mol Cell Proteomics 3 4 (2004) 367-378
    • (2004) Mol Cell Proteomics , vol.3 , Issue.4 , pp. 367-378
    • Diamandis, E.P.1
  • 4
    • 34447290448 scopus 로고    scopus 로고
    • An introduction into proteomics and its clinical applications
    • Ahram M. An introduction into proteomics and its clinical applications. Saudi Med J 28 4 (2007) 499-507
    • (2007) Saudi Med J , vol.28 , Issue.4 , pp. 499-507
    • Ahram, M.1
  • 5
    • 35649024481 scopus 로고    scopus 로고
    • High-resolution proteome/peptidome analysis of peptides and low-molecular-weight proteins in urine
    • Mischak H., Julian B.A., and Novak J. High-resolution proteome/peptidome analysis of peptides and low-molecular-weight proteins in urine. Proteomics Clin Appl 1 8 (2007) 792-804
    • (2007) Proteomics Clin Appl , vol.1 , Issue.8 , pp. 792-804
    • Mischak, H.1    Julian, B.A.2    Novak, J.3
  • 8
    • 0021236724 scopus 로고
    • The place of human gamma-trace (cystatin C) amongst the cysteine proteinase inhibitors
    • Barrett A.J., Davies M.E., and Grubb A. The place of human gamma-trace (cystatin C) amongst the cysteine proteinase inhibitors. Biochem Biophys Res Commun 120 2 (1984) 631-666
    • (1984) Biochem Biophys Res Commun , vol.120 , Issue.2 , pp. 631-666
    • Barrett, A.J.1    Davies, M.E.2    Grubb, A.3
  • 9
    • 0041358773 scopus 로고    scopus 로고
    • A panel of cerebrospinal fluid potential biomarkers for the diagnosis of Alzheimer's disease
    • Carrette O., Demalte I., Scherl A., Yalkinoglu O., Corthals G., Burkhard P., et al. A panel of cerebrospinal fluid potential biomarkers for the diagnosis of Alzheimer's disease. Proteomics 3 8 (2003) 1486-1494
    • (2003) Proteomics , vol.3 , Issue.8 , pp. 1486-1494
    • Carrette, O.1    Demalte, I.2    Scherl, A.3    Yalkinoglu, O.4    Corthals, G.5    Burkhard, P.6
  • 10
    • 3543064741 scopus 로고    scopus 로고
    • Cystatin C as a potential cerebrospinal fluid marker for the diagnosis of Creutzfeldt-Jakob disease
    • Sanchez J.C., Guillaume E., Lescuyer P., Allard L., Carrette O., Scherl A., et al. Cystatin C as a potential cerebrospinal fluid marker for the diagnosis of Creutzfeldt-Jakob disease. Proteomics 4 8 (2004) 2229-2233
    • (2004) Proteomics , vol.4 , Issue.8 , pp. 2229-2233
    • Sanchez, J.C.1    Guillaume, E.2    Lescuyer, P.3    Allard, L.4    Carrette, O.5    Scherl, A.6
  • 11
    • 32044452472 scopus 로고    scopus 로고
    • Cleavage of cystatin C in the cerebrospinal fluid of patients with multiple sclerosis
    • Irani D.N., Anderson C., Gundry R., Cotter R., Moore S., Kerr D.A., et al. Cleavage of cystatin C in the cerebrospinal fluid of patients with multiple sclerosis. Ann Neurol 59 2 (2006) 237-247
    • (2006) Ann Neurol , vol.59 , Issue.2 , pp. 237-247
    • Irani, D.N.1    Anderson, C.2    Gundry, R.3    Cotter, R.4    Moore, S.5    Kerr, D.A.6
  • 12
    • 23844538657 scopus 로고    scopus 로고
    • Truncated cystatin C in cerebrospiral fluid: Technical [corrected] artefact or biological process?
    • Carrette O., Burkhard P.R., Hughes S., Hochstrasser D.F., and Sanchez J.C. Truncated cystatin C in cerebrospiral fluid: Technical [corrected] artefact or biological process?. Proteomics 5 12 (2005) 3060-3065
    • (2005) Proteomics , vol.5 , Issue.12 , pp. 3060-3065
    • Carrette, O.1    Burkhard, P.R.2    Hughes, S.3    Hochstrasser, D.F.4    Sanchez, J.C.5
  • 15
    • 41649100689 scopus 로고    scopus 로고
    • Mining the plasma proteome for cancer biomarkers
    • Hanash S.M., Pitteri S.J., and Faca V.M. Mining the plasma proteome for cancer biomarkers. Nature 3 (2008) 571-579
    • (2008) Nature , vol.3 , pp. 571-579
    • Hanash, S.M.1    Pitteri, S.J.2    Faca, V.M.3
  • 16
    • 0042367739 scopus 로고    scopus 로고
    • Proteomic patterns in biological fluids: do they represent the future of cancer diagnostics?
    • Diamandis E., and Point P. Proteomic patterns in biological fluids: do they represent the future of cancer diagnostics?. Clin Chem 49 8 (2003) 1272-1275
    • (2003) Clin Chem , vol.49 , Issue.8 , pp. 1272-1275
    • Diamandis, E.1    Point, P.2
  • 18
    • 38349090225 scopus 로고    scopus 로고
    • Impact of preanalytical variables on the analysis of biological fluids in proteomic studies
    • Ferguson R.E., Hochstrasser D.F., and Banks R.E. Impact of preanalytical variables on the analysis of biological fluids in proteomic studies. Proteomics Clin Appl 1 8 (2007) 739-746
    • (2007) Proteomics Clin Appl , vol.1 , Issue.8 , pp. 739-746
    • Ferguson, R.E.1    Hochstrasser, D.F.2    Banks, R.E.3
  • 19
    • 0142250869 scopus 로고    scopus 로고
    • Proteomic profiling of urinary proteins in renal cancer by surface enhanced laser desorption ionization and neural-network analysis: identification of key issues affecting potential clinical utility
    • Rogers M.A., Clarke P., Noble J., Munro N.P., Paul A., Selby P.J., et al. Proteomic profiling of urinary proteins in renal cancer by surface enhanced laser desorption ionization and neural-network analysis: identification of key issues affecting potential clinical utility. Cancer Res 15, 63 20 (2003) 6971-6983
    • (2003) Cancer Res , vol.15-63 , Issue.20 , pp. 6971-6983
    • Rogers, M.A.1    Clarke, P.2    Noble, J.3    Munro, N.P.4    Paul, A.5    Selby, P.J.6
  • 20
    • 0003055646 scopus 로고    scopus 로고
    • Freezing method affects the concentration and variability of urine proteins and the interpretation of data on microalbuminuria. The Oxford Regional Prospective Study Group
    • Schultz C.J., Dalton R.N., Turner C., Neil H.A., and Dunger D.B. Freezing method affects the concentration and variability of urine proteins and the interpretation of data on microalbuminuria. The Oxford Regional Prospective Study Group. Diabet Med 17 1 (2000) 7-14
    • (2000) Diabet Med , vol.17 , Issue.1 , pp. 7-14
    • Schultz, C.J.1    Dalton, R.N.2    Turner, C.3    Neil, H.A.4    Dunger, D.B.5
  • 21
    • 23944470664 scopus 로고    scopus 로고
    • Peptidomic analysis of human blood specimens: comparison between plasma specimens and serum by differential peptide display
    • Tammen H., Schulte I., Hess R., Menzel C., Kellmann M., Mohring T., et al. Peptidomic analysis of human blood specimens: comparison between plasma specimens and serum by differential peptide display. Proteomics 5 13 (2005) 3414-3422
    • (2005) Proteomics , vol.5 , Issue.13 , pp. 3414-3422
    • Tammen, H.1    Schulte, I.2    Hess, R.3    Menzel, C.4    Kellmann, M.5    Mohring, T.6
  • 22
    • 0034955141 scopus 로고    scopus 로고
    • Recommended diagnostic criteria for multiple sclerosis: guidelines from the international panel on the diagnosis of multiple sclerosis
    • McDonald W.I., Compston A., Edan G., Goodkin D., Hartung H.P., Lublin F.D., et al. Recommended diagnostic criteria for multiple sclerosis: guidelines from the international panel on the diagnosis of multiple sclerosis. Ann Neurol 50 (2001) 121-127
    • (2001) Ann Neurol , vol.50 , pp. 121-127
    • McDonald, W.I.1    Compston, A.2    Edan, G.3    Goodkin, D.4    Hartung, H.P.5    Lublin, F.D.6
  • 24
    • 0141743615 scopus 로고    scopus 로고
    • Discriminant models for high-throughput proteomics mass spectrometer data
    • Purohit P.V., and Rocke D.M. Discriminant models for high-throughput proteomics mass spectrometer data. Proteomics 3 9 (2003) 1699-1703
    • (2003) Proteomics , vol.3 , Issue.9 , pp. 1699-1703
    • Purohit, P.V.1    Rocke, D.M.2
  • 26
    • 0031556739 scopus 로고    scopus 로고
    • Integrating robust clustering techniques in S-PLUS
    • Elsevier
    • Struyf A., Hubert M., and Rousseeuw P.J. Integrating robust clustering techniques in S-PLUS. Comput Stat Data Anal 26 (1997) 17-37 Elsevier
    • (1997) Comput Stat Data Anal , vol.26 , pp. 17-37
    • Struyf, A.1    Hubert, M.2    Rousseeuw, P.J.3
  • 27
    • 0033014724 scopus 로고    scopus 로고
    • Mass spectral study of polymorphism of the apolipoproteins of very low density lipoprotein
    • Bondarenko P.V., Cockrill S.L., Watkins L.K., Cruzado I.D., and Macfarlane R.D. Mass spectral study of polymorphism of the apolipoproteins of very low density lipoprotein. J Lipid Res 40 3 (1999) 543-555
    • (1999) J Lipid Res , vol.40 , Issue.3 , pp. 543-555
    • Bondarenko, P.V.1    Cockrill, S.L.2    Watkins, L.K.3    Cruzado, I.D.4    Macfarlane, R.D.5
  • 28
    • 23944520883 scopus 로고    scopus 로고
    • HUPO Plasma Proteome Project specimen collection and handling: towards the standardization of parameters for plasma proteome samples
    • Rai A.J., Gelfand C.A., Haywood B.C., Warunek D.J., Yi J., Schuchard M.D., et al. HUPO Plasma Proteome Project specimen collection and handling: towards the standardization of parameters for plasma proteome samples. Proteomics 5 13 (2005) 3262-3277
    • (2005) Proteomics , vol.5 , Issue.13 , pp. 3262-3277
    • Rai, A.J.1    Gelfand, C.A.2    Haywood, B.C.3    Warunek, D.J.4    Yi, J.5    Schuchard, M.D.6
  • 29
    • 1842613666 scopus 로고    scopus 로고
    • Modification of cysteine residue in transthyretin and a synthetic peptide: analyses by electrospray ionization mass spectrometry
    • Nakanishi T., Sato T., Sakoda S., Yoshioka M., and Shimizu A. Modification of cysteine residue in transthyretin and a synthetic peptide: analyses by electrospray ionization mass spectrometry. Biochim Biophys Acta 1698 (2004) 45-53
    • (2004) Biochim Biophys Acta , vol.1698 , pp. 45-53
    • Nakanishi, T.1    Sato, T.2    Sakoda, S.3    Yoshioka, M.4    Shimizu, A.5
  • 30
    • 42249088080 scopus 로고    scopus 로고
    • Serum peptide profiling using MALDI mass spectrometry: avoiding the pitfalls of coated magnetic beads using well-established ZipTip technology
    • Review
    • Tiss A., Smith C., Camuzeaux S., Kabir M., Gayther S., Menon U., et al. Serum peptide profiling using MALDI mass spectrometry: avoiding the pitfalls of coated magnetic beads using well-established ZipTip technology. Proteomics Suppl 1 (2007) 77-89 Review
    • (2007) Proteomics , vol.SUPPL. 1 , pp. 77-89
    • Tiss, A.1    Smith, C.2    Camuzeaux, S.3    Kabir, M.4    Gayther, S.5    Menon, U.6
  • 31
    • 37549000974 scopus 로고    scopus 로고
    • Independent component analysis for the extraction of reliable protein signal profiles from MALDI-TOF mass spectra
    • Mantini D., Petrucci F., Del Boccio P., Pieragostino D., Di Nicola M., Lugaresi A., et al. Independent component analysis for the extraction of reliable protein signal profiles from MALDI-TOF mass spectra. Bioinformatics 24 1 (2008) 63-70
    • (2008) Bioinformatics , vol.24 , Issue.1 , pp. 63-70
    • Mantini, D.1    Petrucci, F.2    Del Boccio, P.3    Pieragostino, D.4    Di Nicola, M.5    Lugaresi, A.6
  • 32
    • 34247154330 scopus 로고    scopus 로고
    • Plasma lipid peroxidation and progression of disability in multiple sclerosis
    • Koch M., Mostert J., Arutjunyan A.V., Stepanov M., Teelken A., Heersema D., et al. Plasma lipid peroxidation and progression of disability in multiple sclerosis. Eur J Neurol 14 5 (2007) 529-533
    • (2007) Eur J Neurol , vol.14 , Issue.5 , pp. 529-533
    • Koch, M.1    Mostert, J.2    Arutjunyan, A.V.3    Stepanov, M.4    Teelken, A.5    Heersema, D.6
  • 33
    • 47249106357 scopus 로고    scopus 로고
    • Lipoic acid: a novel therapeutic approach for multiple sclerosis and other chronic inflammatory diseases of the CNS
    • Salinthone S., Yadav V., Bourdette D.N., and Carr D.W. Lipoic acid: a novel therapeutic approach for multiple sclerosis and other chronic inflammatory diseases of the CNS. Endocr Metab Immune Disord Drug Targets 8 2 (2008) 132-142
    • (2008) Endocr Metab Immune Disord Drug Targets , vol.8 , Issue.2 , pp. 132-142
    • Salinthone, S.1    Yadav, V.2    Bourdette, D.N.3    Carr, D.W.4
  • 34
    • 0036014862 scopus 로고    scopus 로고
    • Serum levels of antioxidant vitamins and lipid peroxidation in multiple sclerosis
    • Besler H.T., Comoǧlu S., and Okçu Z. Serum levels of antioxidant vitamins and lipid peroxidation in multiple sclerosis. Nutr Neurosci 5 3 (2002) 215-220
    • (2002) Nutr Neurosci , vol.5 , Issue.3 , pp. 215-220
    • Besler, H.T.1    Comoǧlu, S.2    Okçu, Z.3
  • 35
    • 49349084487 scopus 로고    scopus 로고
    • Expression of the receptor for advanced glycation end products in oligodendrocytes in response to oxidative stress
    • Qin J., Goswami R., Dawson S., and Dawson G. Expression of the receptor for advanced glycation end products in oligodendrocytes in response to oxidative stress. J Neurosci Res 86 11 (Aug 15 2008) 2414-2422
    • (2008) J Neurosci Res , vol.86 , Issue.11 , pp. 2414-2422
    • Qin, J.1    Goswami, R.2    Dawson, S.3    Dawson, G.4
  • 36
    • 0142028144 scopus 로고    scopus 로고
    • Characterization of specifically oxidized apolipoproteins in mildly oxidized high density lipoprotein
    • Pankhurst G., Wang X.L., Wilcken D.E., Baernthaler G., Panzenböck U., Raftery M., et al. Characterization of specifically oxidized apolipoproteins in mildly oxidized high density lipoprotein. J Lipid Res 44 2 (2003) 349-355
    • (2003) J Lipid Res , vol.44 , Issue.2 , pp. 349-355
    • Pankhurst, G.1    Wang, X.L.2    Wilcken, D.E.3    Baernthaler, G.4    Panzenböck, U.5    Raftery, M.6
  • 37
    • 34548783245 scopus 로고    scopus 로고
    • Serum protein profiling to identify high-risk neuroblastoma: preclinical relevance of blood-based biomarkers
    • Sandoval J.A., Turner K.E., Hoelz D.J., Rescorla F.J., Hickey R.J., and Malkas L.H. Serum protein profiling to identify high-risk neuroblastoma: preclinical relevance of blood-based biomarkers. J Surg Res 142 2 (2007) 268-274
    • (2007) J Surg Res , vol.142 , Issue.2 , pp. 268-274
    • Sandoval, J.A.1    Turner, K.E.2    Hoelz, D.J.3    Rescorla, F.J.4    Hickey, R.J.5    Malkas, L.H.6
  • 38
  • 39
    • 34548593728 scopus 로고    scopus 로고
    • Serum proteomic analysis focused on fibrosis in patients with hepatitis C virus infection
    • White I.R., Patel K., Symonds W.T., Dev A., Griffin P., Tsokanas N., et al. Serum proteomic analysis focused on fibrosis in patients with hepatitis C virus infection. J Transl Med 5 (2007) 33
    • (2007) J Transl Med , vol.5 , pp. 33
    • White, I.R.1    Patel, K.2    Symonds, W.T.3    Dev, A.4    Griffin, P.5    Tsokanas, N.6
  • 40
    • 46149089887 scopus 로고    scopus 로고
    • Comparative proteomics analysis of cerebrospinal fluid of patients with Guillain-Barré syndrome
    • Yang Y.R., Liu S.L., Qin Z.Y., Liu F.J., Qin Y.J., Bai S.M., et al. Comparative proteomics analysis of cerebrospinal fluid of patients with Guillain-Barré syndrome. Cell Mol Neurobiol 28 5 (2008) 737-744
    • (2008) Cell Mol Neurobiol , vol.28 , Issue.5 , pp. 737-744
    • Yang, Y.R.1    Liu, S.L.2    Qin, Z.Y.3    Liu, F.J.4    Qin, Y.J.5    Bai, S.M.6
  • 41
    • 34247139196 scopus 로고    scopus 로고
    • Proteomic identification of potential protein markers in cerebrospinal fluid of GBS patients
    • Jin T., Hu L.S., Chang M., Wu J., Winblad B., and Zhu J. Proteomic identification of potential protein markers in cerebrospinal fluid of GBS patients. Eur J Neurol 14 5 (2007) 563-568
    • (2007) Eur J Neurol , vol.14 , Issue.5 , pp. 563-568
    • Jin, T.1    Hu, L.S.2    Chang, M.3    Wu, J.4    Winblad, B.5    Zhu, J.6
  • 42
    • 33646730482 scopus 로고    scopus 로고
    • Identification of complement C3a as a candidate biomarker in human chronic hepatitis C and HCV-related hepatocellular carcinoma using a proteomics approach
    • Lee I.N., Chen C.H., Sheu J.C., Lee H.S., Huang G.T., Chen D.S., et al. Identification of complement C3a as a candidate biomarker in human chronic hepatitis C and HCV-related hepatocellular carcinoma using a proteomics approach. Proteomics 6 9 (2006) 2865-2873
    • (2006) Proteomics , vol.6 , Issue.9 , pp. 2865-2873
    • Lee, I.N.1    Chen, C.H.2    Sheu, J.C.3    Lee, H.S.4    Huang, G.T.5    Chen, D.S.6
  • 43
    • 33645683223 scopus 로고    scopus 로고
    • Differential post-translational modifications of transthyretin in Alzheimer's disease: a study of the cerebral spinal fluid
    • 2305-2013
    • Biroccio A., Del Boccio P., Panella M., Bernardini S., Di Ilio C., Gambi D., et al. Differential post-translational modifications of transthyretin in Alzheimer's disease: a study of the cerebral spinal fluid. Proteomics 6 7 (2006) 2305-2013
    • (2006) Proteomics , vol.6 , Issue.7
    • Biroccio, A.1    Del Boccio, P.2    Panella, M.3    Bernardini, S.4    Di Ilio, C.5    Gambi, D.6
  • 44
    • 37149043429 scopus 로고    scopus 로고
    • 2-D difference gel electrophoresis of the lung squamous cell carcinoma versus normal sera demonstrates consistent alterations in the levels of ten specific proteins
    • Dowling P., O'Driscoll L., Meleady P., Henry M., Roy S., Ballot J., et al. 2-D difference gel electrophoresis of the lung squamous cell carcinoma versus normal sera demonstrates consistent alterations in the levels of ten specific proteins. Electrophoresis 8 23 (2007) 4302-4310
    • (2007) Electrophoresis , vol.8 , Issue.23 , pp. 4302-4310
    • Dowling, P.1    O'Driscoll, L.2    Meleady, P.3    Henry, M.4    Roy, S.5    Ballot, J.6
  • 45
    • 49149116620 scopus 로고    scopus 로고
    • Comparative serum proteome expression of osteonecrosis of the femoral head in adults
    • Wu R.W., Wang F.S., Ko J.Y., Wang C.J., and Wu S.L. Comparative serum proteome expression of osteonecrosis of the femoral head in adults. Bone 43 3 (Sep 2008) 561-566
    • (2008) Bone , vol.43 , Issue.3 , pp. 561-566
    • Wu, R.W.1    Wang, F.S.2    Ko, J.Y.3    Wang, C.J.4    Wu, S.L.5


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