Arabidopsis decapping 5 is required for mRNA decapping, P-body formation, and translational repression during postembryonic development

Plant Cell

Volumn 21, Issue 10, 2009, Pages 3270-3279

  Xu, Jun ^a   Chua, Nam Hai ^a  

^a ROCKEFELLER UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARABIDOPSIS; ARABIDOPSIS THALIANA; EUKARYOTA; TRITICUM AESTIVUM;

EID: 72049130531     PISSN: 10404651     EISSN: 1532298X     Source Type: Journal    
DOI: 10.1105/tpc.109.070078     Document Type: Article

References (33)

1. Albrecht, M., and Lengauer, T. (2004). Novel Sm-like proteins with long C-terminal tails and associated methyltransferases. FEBS Lett. 569: 18-26. (Pubitemid 38844586)
2. Audhya, A., Hyndman, F., McLeod, I.X., Maddox, A.S., Yates III, J.R., Desai, A., and Oegema, K. (2005). A complex containing the Sm protein CAR-1 and the RNA helicase CGH-1 is required for embryonic cytokinesis in Caenorhabditis elegans. J. Cell Biol. 171: 267-279. (Pubitemid 41540019)
3. Badis, G., Saveanu, C., Fromont-Racine, M., and Jacquier, A. (2004). Targeted mRNA degradation by deadenylation-independent decapping. Mol. Cell 15: 5-15. (Pubitemid 38850215)
4. Barbee, S.A., et al. (2006). Stauten- and FMRP-containing neuronal RNPs are structurally and functionally related to somatic P bodies. Neuron 52: 997-1009.
5. Beelman, C.A., and Parker, R. (1994). Differential effects of translational inhibition in cis and in trans on the decay of the unstable yeast MFA2 mRNA. J. Biol. Chem. 269: 9687-9692.
6. Beelman, C.A., Stevens, A., Caponigro, G., LaGrandeur, T.E., Hatfield, L., Fortner, D.M., and Parker, R. (1996). An essential component of the decapping enzyme required for normal rates of mRNA turnover. Nature 382: 642-646. (Pubitemid 26268959)
7. Boag, P.R., Nakamura, A., and Blackwell, T.K. (2005). A conserved RNA-protein complex component involved in physiological germline apoptosis regulation in C. elegans. Development 132: 4975-4986. (Pubitemid 41764009)
8. Brengues, M., Teixeira, D., and Parker, R. (2005). Movement of eukaryotic mRNAs between polysomes and cytoplasmic processing bodies. Science 310: 486-489. (Pubitemid 41507961)
9. Buchan, J.R., Muhlrad, D., and Parker, R. (2008). P bodies promote stress granule assembly in Saccharomyces cerevisiae. J. Cell Biol. 183: 441-455.
10. Clough, S.J., and Bent, A.F. (1998). Floral dip: A simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J. 16: 735-743.
11. Decker, C.J., Teixeira, D., and Parker, R. (2007). Edc3p and a glutamine/asparagine-rich domain of Lsm4p function in processing body assembly in Saccharomyces cerevisiae. J. Cell Biol. 179: 437-449.
12. Decourty, L., Saveanu, C., Zemam, K., Hantraye, F., Frachon, E., Rousselle, J.-C., Fromont-Racine, M., and Jacquier, A. (2008). Linking functionally related genes by sensitive and quantitative characterization of genetic interaction profiles. Proc. Natl. Acad. Sci. USA 105: 5821-5826.
13. Deyholos, M.K., Cavaness, G.F., Hall, B., King, E., Punwani, J., Van Norman, J., and Sieburth, L.E. (2003). VARICOSE, a WD-domain protein, is required for leaf blade development. Development 130: 6577-6588. (Pubitemid 38088857)
14. Dong, S., Li, C., Zenklusen, D., Singer, R.H., Jacobson, A.He, F. (2007). YRA1 autoregulation requires nuclear export and cytoplasmic Edc3p-mediated degradation of its pre-mRNA. Mol. Cell 25: 559-573. (Pubitemid 46274442)
15. Franks, T.M., and Lykke-Andersen, J. (2008). The control of mRNA decapping and P-body formation. Mol. Cell 32: 605-615.
16. Goeres, D.C., Van Norman, J.M., Zhang, W., Fauver, N.A., Spencer, M.L., and Sieburth, L.E. (2007). Components of the Arabidopsis mRNA decapping complex are required for early seedling development. Plant Cell 19: 1549-1564.
17. Hatfield, L., Beelman, C.A., Stevens, A., and Parker, R. (1996). Mutations in trans-acting factors affecting mRNA decapping in Saccharomyces cerevisiae. Mol. Cell. Biol. 16: 5830-5838.
18. Iwasaki, S., Takeda, A., Motose, H., and Watanabe, Y. (2007). Characterization of Arabidopsis decapping proteins AtDCPI and AtDCP2, which are essential for post-embryonic development. FEBS Lett. 581: 2455-2459. (Pubitemid 46764705)
19. Karimi, M., Inze, D., and Depicker, A. (2002). GATEWAY vectors for Agrobacterium-mediated plant transformation. Trends Plant Sci. 7: 193-195. (Pubitemid 36725938)
20. Kshirsagar, M., and Parker, R. (2004). Identification of Edc3p as an enhancer of mRNA decapping in Saccharomyces cerevisiae. Genetics 166: 729-739.
21. Ling, S.H.M., Decker, C.J., Walsh, M.A., She, M., Parker, R., and Song, H. (2008). Crystal structure of human Edc3 and its functional implications. Mol. Cell. Biol. 28: 5965-5976.
22. Rajyaguru, P., and Parker, R. (2009). CGH-1 and the control of maternal mRNAs. Trends Cell Biol. 19: 24-28.
23. Reijns, M.A., Alexander, R.D., Spiller, M.P., and Beggs, J.D. (2008). A role for Q/N-rich aggregation-prone regions in P-body localization. J. Cell Sci. 121: 2463-2472.
24. Schwartz, D.C., and Parker, R. (1999). Mutations in translation initiation factors lead to increased rates of deadenylation and decapping of mRNAs in Saccharomyces cerevisiae. Mol. Cell. Biol. 19: 5247-5256.
25. Schwartz, D.C., and Parker, R. (2000). mRNA decapping in yeast requires dissociation of the cap binding protein, eukaryotic translation initiation factor 4E. Mol. Cell. Biol. 20: 7933-7942.
26. Sheth, U., and Parker, R. (2003). Decapping and decay of messenger RNA occur in cytoplasmic processing bodies. Science 300: 805-808. (Pubitemid 36532117)
27. Shimada, L.T., Shimada, T., Takahashi, H., Fukao, Y., and HaraNishimura, I. (2008). A novel role for oleosins in freezing tolerance of oilseeds in Arabidopsis thaliana. Plant J. 55: 798-809.
28. Tanaka, K.J., Ogawa, K., Takagi, M., Imamoto, N., Matsumoto, K., and Tsujimoto, M. (2006). RAP55, a cytoplasmic mRNP component, represses translation in Xenopus oocytes. J. Biol. Chem. 281: 40096-40106.
29. Tritschler, F., Eulalio, A., Helms, S., Schmidt, S., Coles, M., Weichenrieder, O., Izaurralde, E., and Truffault, V. (2008). Similar modes of interaction enable trailer hitch and EDC3 to associate with DCP1 and Me31B in distinct protein complexes. Mol. Cell. Biol. 28: 6695-6708.
30. Tritschler, F., Eulalio, A., Truffault, V., Hartmann, M.D., Helms, S., Schmidt, S., Coles, M., Izaurralde, E., and Weichenrieder, O. (2007). A divergent Sm fold in EDC3 proteins mediates DCP1 binding and P-body targeting. Mol. Cell. Biol. 27: 8600-8611.
31. Wilhelm, J.E., Buszczak, M., and Sayles, S. (2005). Efficient protein trafficking requires trailer hitch, a component of a ribonucleoprotein complex localized to the ER in Drosophila. Dev. Cell 9: 675-685. (Pubitemid 41555149)
32. Xu, J., Yang, J.Y., Niu, Q.W., and Chua, N.H. (2006). Arabidopsis DCP2, DCP1, and VARICOSE form a decapping complex required for postembryonic development. Plant Cell 18: 3386-3398. (Pubitemid 46464900)
33. Yang, W.H., Yu, J.H., Gulick, T., Block, K.D., and Bloch, D.B. (2006). RNA-associated protein 55 (RAP55) localizes to mRNA processing bodies and stress granules. RNA 12: 547-554.