Erratum: Global-scale quantification of mineralization pathways in marine sediments: A reaction-transport modeling approach (Geochemistry, Geophysics, Geosystems (2009) 10 (Q10012) DOI: 10.1029/2009GC002484);Global-scale quantification of mineralization pathways in marine sediments: A reaction-transport modeling approach

Geochemistry, Geophysics, Geosystems

Volumn 10, Issue 10, 2009, Pages

  Thullner, Martin ^a,b   Dale, Andrew W ^c   Regnier, Pierre ^b,d  

^a HELMHOLTZ CENTRE FOR ENVIRONMENTAL RESEARCH UFZ   (Germany)

^b UTRECHT UNIVERSITY   (Netherlands)

^c GEOMAR HELMHOLTZ CENTRE FOR OCEAN RESEARCH KIEL   (Germany)

^d UNIVERSITÉ LIBRE DE BRUXELLES   (Belgium)

Author keywords

Carbon burial; Early diagenesis; Geomicrobiology modeling; Redox reaction rates; Terminal electron acceptor fluxes; carbon burial; early diagenesis; geomicrobiology modeling; redox reaction rates; terminal electron acceptor fluxes

Indexed keywords

EID: 72049123499     PISSN: 15252027     EISSN: 15252027     Source Type: Journal    
DOI: 10.1029/2010GC003409     Document Type: Erratum

References (81)

1. Aguilera, D. R., P. Jourabchi, C. Spiteri, and P. Regnier (2005), A knowledge-based reactive transport approach for the simulation of biogeochemical dynamics in Earth systems, Geochem. Geophys. Geosyst., 6, Q07012, doi:10.1029/ 2004GC000899.
2. 2, and Corg flux on diagenetic reaction balances, J. Mar. Res., 52, 259-295, doi:10.1357/ 0022240943077091.
3. Andersson, J. H., J. W. M. Wijsman, P. M. J. Herman, J. J. Middelburg, K. Soetaert, and C. Heip (2004), Respiration patterns in the deep ocean, Geophys. Res. Lett., 31, L03304, doi:10.1029/2003GL018756.
4. Archer, D. E., J. L. Morford, and S. R. Emerson (2002), A model of suboxic sedimentary diagenesis suitable for automatic tuning and gridded global domains, Global Biogeochem. Cycles, 16(1), 1017, doi:10.1029/2000GB001288.
5. Arndt, S., H.-J. Brumsack, and K. Wirtz (2006), Cretaceous black shales as active bioreactors: A biogeochemical model for the deep biosphere encountered during ODP Leg 207 (Demerara Rise), Geochim. Cosmochim. Acta, 70, 408-425, doi:10.1016/j.gca.2005.09.010. (Pubitemid 43109704)
6. Berelson, W. M., D. E. Hammond, D. O'Neil, X. M. Xu, C. Chin, and J. Zukin (1990), Benthic fluxes and pore water studies from sediments of the central equatorial North Pacific: Nutrient diagenesis, Geochim. Cosmochim. Acta, 54, 3001-3012, doi:10.1016/0016-7037(90)90117-4.
7. Berelson, W. M., J. McManus, K. H. Coale, K. S. Johnson, T. Kilgore, D. Burdige, and C. Pilskaln (1996), Biogenic matter diagenesis on the sea floor: A comparison between two continental margin transects, J. Mar. Res., 54, 731-762, doi:10.1357/0022240963213673.
8. Berg, P., S. Rysgaard, and B. Thamdrup (2003), Dynamic modeling of early diagenesis and nutrient cycling: A case study in an Arctic marine sediment, Am. J. Sci., 303, 905-955, doi:10.2475/ajs.303.10.905.
9. Berner, R. A. (1980), Early Diagenesis: A Theoretical Approach, Princeton Univ. Press, Princeton, N. J.
10. Boudreau, B. P. (1996), A method-of-lines code for carbon and nutrient diagenesis in aquatic sediments, Comput. Geosci., 22, 479-496, doi:10.1016/0098-3004(95)00115-8. (Pubitemid 126380248)
11. Boudreau, B. P. (1997), Diagenetic Models and Their Implementation, Springer, Berlin.
12. Boudreau, B. P., and B. R. Ruddick (1991), On a reactive continuum representation of organic-matter diagenesis, Am. J. Sci., 291, 507-538.
13. Brüchert, V., and C. Arnosti (2003), Anaerobic carbon transformation: Experimental studies with flow through cells, Mar. Chem., 80, 171-183, doi:10.1016/S0304-4203(02)00119-6.
14. Buisman, C., P. Uspeert, A. Janssen, and G. Lettinga (1990), Kinetics of chemical and biological sulphide oxidation in aqueous solutions, Water Res., 24, 667-671, doi:10.1016/ 0043-1354(90)90201-G.
15. Burdige, D. J. (2006), Geochemistry of Marine Sediments, Princeton Univ. Press, Princeton, N. J.
16. Cai, W.-J., and C. E. Reimer (1995), Benthic oxygen flux, bottom water oxygen concentration and core top organic carbon content in the deep northeast Pacific Ocean, Deep Sea Res., Part A, 42, 1681-1699, doi:10.1016/0967-0637(95) 00073-F. (Pubitemid 3005276)
17. Canavan, R. W., P. Van Cappellen, J. J. G. Zwolsman, G. A. van den Berg, and C. P. Slomp (2007), Geochemistry of trace metals in fresh water sediment: Field results and diagenetic modeling, Sci. Total Environ., 381, 263-279, doi:10.1016/ j.scitotenv.2007.04.001.
18. Canfield, D. E. (1989), Sulfate reduction and oxic respiration in marine sediments: Implications for organic-carbon preservation in euxinic environments, Deep Sea Res., Part A, 36, 121-138, doi:10.1016/0198-0149(89)90022-8.
19. Canfield, D. E. (1993), Organic matter oxidation in marine sediments, in Interactions of C, N, P and S Biogeochemical Cycles and Global Change, NATO ASI Ser., Ser. I, vol. 4, edited by R.Wollast, F. T. Mackenzie, and L. Chou, pp. 333-364, Springer, Berlin.
20. Canfield, D. E., B. Thamdrup, and J. Hansen (1993), The anaerobic degradation of organic matter in Danish coastal sediments: Iron reduction, manganese reduction, and sulfate reduction, Geochim. Cosmochim. Acta, 57, 3867-3883, doi:10.1016/0016-7037(93)90340-3. (Pubitemid 24394679)
21. Canfield, D. E., B. Thamdrup, and E. Kristensen (2005), Aquatic Geomicrobiology, Adv. Mar. Biol., vol. 48, Elsevier Acad., Amsterdam.
22. Conkright, M. E., R. A. Locarnini, H. E. Garcia, T. D. O'Brien, T. P. Boyer, C. Stephens, and J. I. Antonov (2002), World Ocean Atlas 2001: Objective Analyses, Data Statistics, and Figures, CD-ROM documentation, Natl. Oceanogr. Data Cent., Silver Spring, Md.
23. Dale, A. W., D. R. Aguilera, P. Regnier, H. Fossing, N. J. Knab, and B. B. Jørgensen (2008a), Seasonal dynamics of the depth and rate of anaerobic oxidation of methane in Aarhus Bay (Denmark) sediments, J. Mar. Res., 66, 127-155, doi:10.1357/002224008784815775.
24. Dale, A. W., P. Regnier, N. J. Knab, B. B. Jørgensen, and P. Van Cappellen (2008b), Anaerobic oxidation of methane (AOM) in marine sediments from the Skagerrak (Denmark): II. Reaction-transport modelling, Geochim. Cosmochim. Acta, 72, 2880-2894, doi:10.1016/j.gca.2007.11.039.
25. Dale, A. W., V. Brüchert, M. Alperin, and P. Regnier (2009), An integrated sulfur isotope model for Namibian shelf sediments, Geochim. Cosmochim. Acta, 73, 1924-1944, doi:10.1016/j.gca.2008.12.015.
26. Devol, A. H. (1991), Direct measurement of nitrogen gas fluxes from continental shelf sediments, Nature, 349, 319-321, doi:10.1038/349319a0.
27. Dhakar, S. P., and D. J. Burdige (1996), A coupled, non-linear, steady state model for early diagenetic processes in pelagic sediments, Am. J. Sci., 296, 296-330.
28. Ferdelman, T. G., H. Fossing, K. Neumann, and H. D. Schulz (1999), Sulfate reduction in surface sediments of the southeast Atlantic continental margin between 15°38′S and 27°57′S (Angola and Namibia), Limnol. Oceanogr., 44, 650-661.
29. Fossing, H., T. G. Ferdelman, and P. Berg (2000), Sulfate reduction and methane oxidation in continental margin sediments influenced by irrigation (south-east Atlantic off Namibia), Geochim. Cosmochim. Acta, 64, 897-910.
30. Froelich, P. N., G. P. Klinkhammer, M. L. Bender, N. A. Luedtke, G. R. Heath, D. Cullen, and P. Dauphin (1979), Early oxidation of organic matter in pelagic sediments of the eastern equatorial Atlantic: Suboxic diagenesis, Geochim. Cosmochim. Acta, 43, 1075-1090, doi:10.1016/ 0016-7037(79)90095-4.
31. Glud, R. N. (2008), Oxygen dynamics of marine sediments, Mar. B i o l . Re s. , 4 , 243-289, doi:10.1080/ 17451000801888726.
32. Glud, R. N., J. K. Gundersen, B. B. Jorgensen, N. P. Revsbech, and H. D. Schulz (1994), Diffusive and total oxygen uptake of deep-sea sediments in the eastern South Atlantic Ocean: In situ and laboratory measurements, Deep Sea Res., Part II, 41, 1767-1788, doi:10.1016/0967-0637(94)90072-8.
33. Hammond, D. E., J. McManus, W. M. Berelson, T. E. Kilgore, and R. H. Pope (1996), Early diagenesis of organic material in equatorial Pacific sediments: Stoichiometry and kinetics, Deep Sea Res., Part II, 43, 1365-1412, doi:10.1016/0967-0645(96)00027-6. (Pubitemid 27169608)
34. Hartnett, H. E., R. G. Keil, J. I. Hedges, and A. H. Devol (1998), Influence of oxygen exposure time on organic carbon preservation in continental margin sediments, Nature, 391, 572-574, doi:10.1038/35351. (Pubitemid 28157595)
35. Hensen, C., H. Landenberger, M. Zabel, and H. D. Schulz (1998), Quantification of diffusive benthic fluxes of nitrate, phosphate and silicate in the southern Atlantic Ocean, Global Biogeochem. Cycles, 12, 193-210, doi:10.1029/ 97GB02731.
36. Hensen, C., M. Zabel, and H. N. Schulz (2006), Benthic cycling of oxygen, nitrogen and phosphorus, in Marine Geochemistry, edited by H. D. Schulz and M. Zabel, pp. 207-234, Springer, Heidelberg, Germany.
37. Holstein, J. M., and K. Wirtz (2009), Sensitivity analysis of nitrogen and carbon cycling in marine sediments, Estuarine Coastal Shelf Sci ., 82, 632-644, doi:10.1016/ j.ecss.2009.02.008.
38. Inthorn, M., V. Mohrholz, and M. Zabel (2006), Nepheloid layer distribution in the Benguela upwelling area offshore Namibia, Deep Sea Res., Part I, 53, 1423-1438, doi:10.1016/j.dsr.2006.06.004. (Pubitemid 44307634)
39. Jahnke, R. A. (1996), The global ocean flux of particulate organic carbon: Areal distribution and magnitude, Global Biogeochem. Cycles, 10, 71-88, doi:10.1029/95GB03525. (Pubitemid 26471662)
40. Jahnke, R. A., C. E. Reimers, and D. B. Craven (1990), Intensification of recycling of organic matter at the sea floor near ocean margins, Nature, 348, 50-54, doi:10.1038/ 348050a0.
41. Jørgensen, B. B. (1977a), The sulfur cycle of a coastal marine sediment (Limfjorden, Denmark), Limnol. Oceanogr., 22, 814-832.
42. Jørgensen, B. B. (1977b), Bacterial sulfate reduction within reduced microniches of oxidized marine sediments, Mar. Biol. Berlin, 41, 7-17, doi:10.1007/BF00390576.
43. Jørgensen, B. B. (1982), Mineralization of organic matter in the sea bed-The role of sulfate reduction, Nature, 296, 643-645, doi:10.1038/296643a0.
44. Jørgensen, B. B. (1983), Processes at the sediment-water interface, in The Major Biogeochemical Cycles and Their Interactions, edited by B. Bolin and R. C. Cook, pp. 477-509, Sci. Comm. on Problems of the Environ., Paris.
45. Jørgensen, B. B., and S. Kasten (2006), Sulfur cycling and methane oxidation, in Marine Geochemistry, edited by H. D. Schulz and M. Zabel, pp. 271-302, Springer, Heidelberg, Germany.
46. Jourabchi, P., P. Van Cappellen, and P. Regnier (2005), Quantitative interpretation of pH distributions in aquatic sediments: A reaction-transport modeling approach, Am. J. Sci., 305, 919-956, doi:10.2475/ajs.305.9.919.
47. Katsev, S., I. Tsandev, I. L'Heureux, and D. G. Rancourt (2006), Factors controlling long-term phosphorous efflux from lake sediments: Exploratory reactive-transport modeling, Chem. Geol., 234, 127-147, doi:10.1016/j.chemgeo. 2006.05.001.
48. Linke, P., K. Wallmann, E. Suess, C. Hensen, and G. Rehder (2005), In situ benthic fluxes from an intermittently active mud volcano at the Costa Rica convergent margin, Earth Planet. Sci. Lett., 235, 79-95.
49. Longhurst, A., S. Sathyendranath, and T. Platt (1995), An estimate of global primary production in the ocean from satellite radiometer data, J. Plankton Res., 17, 1245-1271, doi:10.1093/plankt/17.6.1245.
50. Luff, R., and L. Wallmann (2003), Fluid flow, methane fluxes, carbonate precipitation and biogeochemical turnover in gas hydrate-bearing sediments at Hydrate Ridge, Cascadia Margin: Numerical modeling and mass balances, Geochim. Cosmochim. Acta, 67, 3403-3421, doi:10.1016/S0016-7037(03)00127-3. (Pubitemid 37312357)
51. Mackin, J. E., and K. T. Swider (1989), Organic-matter decomposition pathways and oxygen consumption in coastal marine sediments, J. Mar. Res., 47, 681-716, doi:10.1357/ 002224089785076154.
52. Meile, C., and P. Van Cappellen (2003), Global estimates of enhanced solute transport in marine sediments, Limnol. Oceanogr., 48, 777-786.
53. Meile, C., C. M. Koretsky, and P. Van Cappellen (2001), Quantifying bioirrigation in aquatic sediments: An inverse modeling approach, Limnol. Oceanogr., 46, 164-177.
54. Meile, C., P. Berg, P. Van Cappellen, and K. Tuncay (2005), Solute-specific pore water irrigation: Implications for chemical cycling in early diagenesis, J. Mar. Res., 63, 601-621.
55. Meysman, F. J. R., O. S. Galaktionov, S. Madani, and J. J. Middelburg (2005), Modeling biological interactions in aquatic sediments as coupled reactive transport, in Interactions Between Macro-and Microorganisms in Marine Sediments, Coastal Estuarine Stud., vol. 60, edited by E. Kristensen et al., pp. 359-388, AGU, Washington, D. C.
56. Middelburg, J. J. (1989), A simple model for organic matter decomposition in marine sediments, Geochim. Cosmochim. Acta, 53, 1577-1581, doi:10.1016/0016-7037(89)90239-1.
57. Middelburg, J. J., K. Soetaert, P. M. J. Herman, and C. H. R. Heip (1996), Denitrification in marine sediments: A model study, Global Biogeochem. Cycles, 10, 661-673, doi:10.1029/96GB02562.
58. Middelburg, J. J., K. Soetaert, and P. M. J. Herman (1997), Empirical relationships for use in global diagenetic models, Deep Sea Res., Part I, 44, 327-344, doi:10.1016/S0967-0637(96)00101-X. (Pubitemid 27156028)
59. 2S in seawater as a function of temperature, pH, and ionic strength, Environ. Sci. Technol., 21, 439-443, doi:10.1021/es00159a003.
60. Mulsow, S., B. P. Boudreau, and J. N. Smith (1998), Bioturbation and porosity gradients, Limnol. Oceanogr., 43, 1-9.
61. National Geophysical Data Center (1993), 5-minute gridded global relief data (ETOPO5), NGDC Data Announce. 93-MGG-01, Boulder, Colo.
62. Raiswell, R., and D. E. Canfield (1996), Rates of reaction between silicate iron and dissolved sulfide in Peru Margin sediments, Geochim. Cosmochim. Acta, 60, 2777-2787, doi:10.1016/0016-7037(96)00141-X.
63. Regnier, P., J. P. O'Kane, C. I. Steefel, and J. P. Vanderborght (2002), Modeling complex multi-component reactive transport systems: Towards a simulation environment based on the concept of a Knowledge Base, Appl. Math. Model., 26, 913-927, doi:10.1016/S0307-904X(02)00047-1. (Pubitemid 35197889)
64. Reimers, C. E., R. A. Jahnke, and D. C. McCorkle (1992), Carbon fluxes and burial rates over the continental slope and rise off central California with implications for the global carbon cycle, Global Biogeochem. Cycles, 6, 199-224, doi:10.1029/92GB00105.
65. Sayles, F. L., and W. R. Martin (1995), In situ tracer studies of solute transport across the sediment-water interface at the Bermuda Time Series site, Deep Sea Res., Part I, 42, 31-52, doi:10.1016/0967-0637(94)00033-O.
66. Seiter, K., C. Hensen, and M. Zabel (2005), Benthic carbon mineralization on a global scale, Global Biogeochem. Cycles, 19, GB1010, doi:10.1029/ 2004GB002225. (Pubitemid 40801461)
67. Slomp, C. P., J. F. P. Malschaert, L. Lohse, and W. Van Raaphorst (1997), Iron and manganese cycling in different sedimentary environments on the North Sea continental margin, Cont. Shelf Res., 17, 1083-1117, doi:10.1016/ S0278-4343(97)00005-8.
68. Smith, S. V., and J. T. Hollibaugh (1993), Coastal metabolism and the oceanic organic carbon balance, Rev. Geophys., 31, 75-89, doi:10.1029/92RG02584. (Pubitemid 23382933)
69. Soetaert, K., P. M. J. Herman, and J. J. Middelburg (1996), A model of early diagenetic processes from the shelf to abyssal depths, Geochim. Cosmochim. Acta, 60, 1019-1040, doi:10.1016/0016-7037(96)00013-0.
70. Teal, L. R., M. T. Bulling, E. R. Parker, and M. Solan (2008), Global patterns of bioturbation intensities and mixed depth of marine soft sediments, Aquat. Biol., 2, 207-218.
71. Thamdrup, B. P., and D. E. Canfield (1996), Pathways of carbon oxidation in continental margin sediments off central Chile, Limnol. Oceanogr., 41, 1629-1650.
72. Thullner, M., P. Van Cappellen, and P. Regnier (2005), Modeling the impact of microbial activity on redox dynamics in porous media, Geochim. Cosmochim. Acta, 69, 5005-5019, doi:10.1016/j.gca.2005.04.026. (Pubitemid 41716072)
73. Thullner, M., P. Regnier, and P. Van Cappellen (2007), Modeling microbially induced carbon degradation in redox-stratified subsurface environments: Concepts and open questions, Geomicrobiol. J., 24, 139-155, doi:10.1080/ 01490450701459275.
74. Tromp, T. K., P. Van Cappellen, and R. M. Key (1995), A global model for the early diagenesis of organic carbon and organic phosphorus in marine sediments, Geochim. Cosmochim. Acta, 59, 1259-1284, doi:10.1016/0016-7037(95) 00042-X.
75. Van Cappellen, P., and J.-F. Gaillard (1996), Biogeochemical dynamics in aquatic sediments, in Reactive Transport in Porous Media, Rev. Mineral., vol. 34, P. C. Lichtner, C. I. Steefel, and E. H. Oelkers, pp. 335-376, Mineral. Soc. of Am., Washington, D. C.
76. Van Cappellen, P., and Y. Wang (1995), Metal cycling in surface sediments: Modeling the interplay or transport and reaction, in Metal Speciation and Contamination of Aquatic Sediments, edited by H. E. Allen, pp. 21-64, Ann Arbor Press, Chelsea, Mich.
77. Van Cappellen, P., and Y. Wang (1996), Cycling of iron and manganese in surface sediments: A general theory for the coupled transport and reaction of carbon, oxygen, nitrogen, sulfur, iron, and manganese, Am. J. Sci., 296, 197-243.
78. Westrich, J. T., and R. A. Berner (1984), The role of sedimentary organic matter in bacterial sulfate reduction: The G model tested, Limnol. Oceanogr., 29, 236-249.
79. Wijsman, J. W. M. (2000), Early diagenetic processes in northwestern Black Sea sediments, Ph.D. thesis, Groningen Univ., Groningen, Netherlands.
80. Wirtz, K. (2003), Control of biogeochemical cycling by mobility and metabolic strategies of microbes in the sediments: An integrated model study, FEMS Microbiol. Ecol., 46, 295-306, doi:10.1016/S0168-6496(03)00196-X. (Pubitemid 37494871)
81. Zabel, M., and C. Hensen (2006), Quantification and regionalization of benthic fluxes, in Marine Geochemistry, edited by H. D. Schulz and M. Zabel, pp. 429-452, Springer, Heidelberg, Germany.