Microfluidic chip-based assay for post-hematopoietic stem cell transplantation chimerism monitoring using polymorphic tandem repeat markers

Analytical Biochemistry

Volumn 397, Issue 2, 2010, Pages 181-185

  Daud, Siti Sarah ^a   Ibrahim, Kamariah ^a   Choong, Soo Sin ^a   Vengidasan, Lelamekala ^a   Chong, Lee Ai ^a   Ariffin, Hany ^a  

^a UNIVERSITY MALAYA MEDICAL CENTRE   (Malaysia)

Author keywords

Allogeneic; Chimerism; Engraftment; Variable number tandem repeats

Indexed keywords

DNA; ELECTROPHORESIS; GENES; GRAFTS; MICROFLUIDICS; MICROPROCESSOR CHIPS; STEM CELLS;

ALLOGENEIC; CHIMERISM; COEFFICIENT OF VARIATION VALUES; ENGRAFTMENT; HEMATOPOIETIC STEM CELL TRANSPLANTATION; MICROFLUIDIC ELECTROPHORESIS; QUANTITATIVE MONITORING; TANDEM REPEATS;

POLYMERASE CHAIN REACTION;

DNA FRAGMENT;

ALLOGENEIC HEMATOPOIETIC STEM CELL TRANSPLANTATION; ANALYTIC METHOD; ARTICLE; CELL COUNT; CLINICAL ARTICLE; CONTROLLED STUDY; COST CONTROL; ENGRAFTMENT; GENETIC POLYMORPHISM; HISTOCOMPATIBILITY; HUMAN; HUMAN CELL; INDEL MUTATION; MICROCHIP ELECTROPHORESIS; MICROFLUIDIC ANALYSIS; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; QUANTITATIVE ANALYSIS; REAL TIME POLYMERASE CHAIN REACTION; TANDEM REPEAT;

EID: 72049114951     PISSN: 00032697     EISSN: 10960309     Source Type: Journal    
DOI: 10.1016/j.ab.2009.10.008     Document Type: Article

References (26)

1. Slavin S., Nagler A., Kapelushnik Y., Aker M., Cividalli G., Varadi G., Kirschbaum M., Ackerstein A., Samuel S., Amar A., Brautbar C., Ben-Tal O., Eldor A., and Or R. Nonmyeloablative stem cell transplantation and cell therapy as an alternative to conventional bone marrow transplantation with lethal cytoreduction for the treatment of malignant and nonmalignant hematologic diseases. Blood 91 (1998) 756-763
2. Filipovich A. Hematopoietic cell transplantation for correction of primary immunodeficiencies. Bone Marrow Transplant. 42 (2008) S49-S52
3. Myers K.C., and Davies S.M. Hematopoietic stem cell transplantation for bone marrow failure syndromes in children. Biol. Blood Marrow Transplant. 15 (2009) 279-292
4. Baron F., and Sandmaier B.M. Chimerism and outcomes after allogeneic hematopoietic cell transplantation following nonmyeloablative conditioning. Leukemia 20 (2006) 1690-1700
5. Levine J.E., Barrett A.J., Zhang M.J., Arora M., Pulsipher M.A., Bunin N., Fort J., Loberiza F., Porter D., Giralt S., Drobyski W., Wang D., Pavletic S., Ringden O., Horowitz M.M., and Collins Jr. R. Donor leukocyte infusions to treat hematologic malignancy relapse following allo-SCT in a pediatric population. Bone Marrow Transplant. 42 (2008) 201-205
6. Xiao-Jun H., Lan-Ping X., Kai-Yan L., Dai-Hong L., Huan C., Wei H., Yu-Hong C., Jing-Zhi W., Yao C., Xiao-Hui Z., Hong-Xia S., and Dao-Pei L. HLA-mismatched/haploidentical hematopoietic stem cell transplantation without in vitro T cell depletion for chronic myeloid leukemia: improved outcomes in patients in accelerated phase and blast crisis phase. Ann. Med. 40 (2008) 444-455
7. Bader P., Niethammer D., Willasch A., Kreyenberg H., and Klingebiel T. How and when should we monitor chimerism after allogeneic stem cell transplantation?. Bone Marrow Transplant. 35 (2005) 107-119
8. Khan F., Agarwal A., and Agrawal S. Significance of chimerism in hematopoietic stem cell transplantation: new variations on an old theme. Bone Marrow Transplant. 34 (2004) 1-12
9. Bader P., Beck J., Frey A., Schlegel P.G., Hebarth H., Handgretinger R., Einsele H., Niemeyer C., Benda N., Faul C., Kanz L., Niethammer D., and Klingebiel T. Serial and quantitative analysis of mixed hematopoietic chimerism by PCR in patients with acute leukemias allows the prediction of relapse after allogeneic BMT. Bone Marrow Transplant. 21 (1998) 487-495
10. Dubovsky J., Daxberger H., Fritsch G., Printz D., Peters C., Matthes S., Gadner H., Lion T., and Muller-Bérat N. Kinetics of chimerism during the early post-transplant period in pediatric patients with malignant and non-malignant hematologic disorders: implications for timely detection of engraftment, graft failure, and rejection. Leukemia 12 (1999) 2059-2069
11. Elmaagacli A.H., Freist A., Hahn M., Opalka B., Seeber S., Schaefer U.W., and Beelen D.W. Estimating the relapse stage in chronic myeloid leukaemia patients after allogeneic stem cell transplantation by the amount of BCR-ABL fusion transcripts detected using a new real-time polymerase chain reaction method. Br. J. Haematol. 113 (2001) 1072-1075
12. Koldehoff M., Steckel N.K., Hlinka M., Beelen D.W., and Elmaagacli A.H. Quantitative analysis of chimerism after allogeneic stem cell transplantation by real-time polymerase chain reaction with single nucleotide polymorphisms, standard tandem repeats, and Y-chromosome-specific sequences. Am. J. Hematol. 81 (2006) 735-746
13. Sambrook J., Fritsch E.F., and Maniatis T. Molecular Cloning: A Laboratory Manual. second ed. (1989), Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY (Chapter 6.4.)
14. Kamel A.M., Mossallam G.I., Mahmoud H.K., Hamdy N., Haddad A.E., Fahmy O., and Nassar A.A. Variable number tandem repeat polymorphism as a tool of chimerism detection in allogeneic stem cell transplantation. J. Egypt. Nat. Cancer Inst. 14 (2002) 275-287
15. Nollet F., Billiet J., Selleslag D., and Criel A. Standardisation of multiplex fluorescent short tandem repeat analysis for chimerism testing. Bone Marrow Transplant. 28 (2001) 511-518
16. Alizadeh M., Bernard M., Danic B., Dauriac C., Birebent B., Lapart C., Lamy T., Le Prisé P.-Y., Beauplet A., Bories D., Semana G., and Quelvennec E. Quantitative assessment of hematopoietic chimerism after bone marrow transplantation by real-time quantitative polymerase chain reaction. Blood 99 (2002) 4618-4625
17. Bai L., Deng Y.M., Dodds A.J., Milliken S., Moore J., and Ma D.D. A SYBR-Green-based real-time PCR method for detection of haemopoietic chimerism in allogeneic haemopoietic stem cell transplant recipients. Eur. J. Haematol. 77 (2006) 425-431
18. Chalandon Y., Vischer S., Helg C., Chapuis B., and Roosnek E. Quantitative analysis of chimerism after allogeneic stem cell transplantation by PCR amplification of microsatellite markers and capillary electrophoresis with fluorescence detection: the Geneva experience. Leukemia 17 (2003) 228-233
19. Rossomando E.F., White L., and Ulfelder K.J. Capillary electrophoresis: separation and quantitation of reverse transcriptase polymerase chain reaction products from polio virus. J. Chromatogr. B 656 (1994) 159-168
20. Zhang N., and Yeung E.S. On-line coupling of polymerase chain reaction and capillary electrophoresis for automatic DNA typing and HIV-1 diagnosis. J. Chromatogr. B 714 (1998) 3-11
21. Gong X., and Yeung E.S. Genetic typing and HIV-1 diagnosis by using 96 capillary array electrophoresis and ultraviolet absorption detection. J. Chromatogr. B 741 (2000) 15-21
22. Gelfi C., Orsi A., Leoncini F., Righetti P.G., Spiga I., Carrera P., and Ferrari M. Amplification of 18 dystrophin gene exons in DMD/BMD patients: simultaneous resolution by capillary electrophoresis in sieving liquid polymers. BioTechniques 19 (1995) 254-258
23. Gelfi C., Righetti P.G., Brancolini V., Cremonesi L., and Ferrari M. Capillary electrophoresis in polymer networks for analysis of PCR products: detection of delta F508 mutation in cystic fibrosis. Clin. Chem. 40 (1994) 1603-1605
24. Gelfi C., Cossu G., Carta P., Serra M., and Righetti P.G. Gene dosage in capillary electrophoresis: pre-natal diagnosis of Down's syndrome. J. Chromatogr. 718 (1995) 405-412
25. Van Hoofstat D.E., Deforce D.L., Hubert De Pauw I.P., and van den Eeckhout E.G. DNA typing of fingerprints using capillary electrophoresis: effect of dactyloscopic powders. Electrophoresis 20 (1999) 2870-2876
26. Wittwater C.T., and Garling D.J. Rapid cycle DNA amplification: time and temperature optimisation. BioTechniques 10 (1991) 76-83