A histology-based atlas of the C57BL/6J mouse brain deformably registered to in vivo MRI for localized radiation and surgical targeting

Physics in Medicine and Biology

Volumn 54, Issue 24, 2009, Pages 7315-7327

  Purger, David ^a   McNutt, Todd ^a   Achanta, Pragathi ^b   Quĩones Hinojosa, Alfredo ^b   Wong, John ^a   Ford, Eric ^a  

^a JOHNS HOPKINS UNIVERSITY SCHOOL OF MEDICINE   (United States)

^b JOHNS HOPKINS UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AGE GROUPS; AVERAGE STRUCTURE; BRAIN SCAN; DEFORMABLE REGISTRATION; DIMENSIONAL POSITION; IN-VIVO; LATERAL VENTRICLES; MESH VERTEX; MORPHOMETRIC MEASUREMENTS; MORPHOMETRY; MOUSE BRAIN; MR IMAGES; NEUROBIOLOGICAL RESEARCH; PHENOTYPING; PRECISION TARGETING; RADIATION TREATMENTS; SAN DIEGO , CA; SPATIAL DEVIATION; SURGICAL PROCEDURES; TRIANGULAR MESHES;

BIOLOGICAL RADIATION EFFECTS; DEFORMATION; FLUORINE CONTAINING POLYMERS; HISTOLOGY;

THREE DIMENSIONAL;

ANIMAL EXPERIMENT; ANIMAL TISSUE; ARTICLE; ATLAS; BRAIN SCINTISCANNING; BRAIN SURGERY; BRAIN VENTRICLE; C57BL 6 MOUSE; CONTROLLED STUDY; HISTOLOGY; IN VIVO STUDY; LATERAL BRAIN VENTRICLE; MOUSE; NONHUMAN; NUCLEAR MAGNETIC RESONANCE IMAGING; PHENOTYPE; PRIORITY JOURNAL; RADIATION;

ANIMALS; BRAIN; COMPUTER GRAPHICS; FEMALE; IMAGE PROCESSING, COMPUTER-ASSISTED; IMAGING, THREE-DIMENSIONAL; MAGNETIC RESONANCE IMAGING; MALE; MICE; MICE, INBRED C57BL;

EID: 71949101223     PISSN: 00319155     EISSN: 13616560     Source Type: Journal    
DOI: 10.1088/0031-9155/54/24/005     Document Type: Article

References (24)

1. Amunts K and Zilles K 2001 Advances in cytoarchitectonic mapping of the human cerebral cortex Neuroimaging Clin. North Am. 11 151-69 (Pubitemid 32916804)
2. Badea A, Ali-Sharief A A and Johnson G A 2007 Morphometric analysis of the C57BL/6J mouse brain NeuroImage 37 683-93
3. Besl P J and McKay N D 1992 A method for registration of 3-D shapes IEEE Trans. Pattern Anal. Mach. Intell. 14 239-56
4. Bock N A, Kovaević N, Lipina T V, Roder J C, Ackerman S L and Henkelman R M 2006 In vivo magnetic resonance imaging and semiautomated image analysis extend the brain phenotype for cdf/cdf mice J. Neurosci. 26 4455-9
5. Chen X J, Kovaević N, Lobaugh N J, Sled J G, Henkelman R M and Henderson J T 2006 Neuroanatomical differences between mouse strains as shown by high-resolution 3D MRI NeuroImage 29 99-105
6. Cyr M, Caron M G, Johnson G A and Laakso A 2005 Magnetic resonance imaging at microscopic resolution reveals subtle morphological changes in a mouse model of dopaminergic hyperfunction NeuroImage 26 83-90
7. Doetsch F, Caillé I, Lim D A, García-Verdugo J M and Alvarez-Buylla A 1999 Subventricular zone astrocytes are neural stem cells in the adult mammalian brain Cell 97 703-16
8. Dorr A E, Lerch J P, Spring S, Kabani N and Henkelman R M 2008 High resolution three-dimensional brain atlas using an average magnetic resonance image of 40 adult C57Bl/6J mice NeuroImage 42 60-9
9. Eickhoff S, Walters N B, Schleicher A, Kril J, Egan G F, Zilles K, Watson J D G and Amunts K 2005 High-resolution MRI reflects myeloarchitecture and cytoarchitecture of human cerebral cortex Hum. Brain Mapp. 24 206-15
10. Fricke S T, Vink R, Chiodo C, Cernak I, Ileva L and Faden A I 2004 Consistent and reproducible slice selection in rodent brain using a novel stereotaxic device for MRI J. Neurosci. Methods 136 99-102
11. Graves E E et al 2007 Design and evaluation of a variable aperture collimator for conformal radiotherapy of small animals using a microCT scanner Med. Phys. 34 4359-67
12. Jaffray D et al 2006 An image-guided irradiator for pre-clinical radiation therapy studies Med. Phys. 33 2241
13. Kiehl E L et al 2008 Feasibility of small animal cranial irradiation with the microRT system Med. Phys. 35 4735-43
14. Kovaević N et al 2005 A three-dimensional MRI atlas of the mouse brain with estimates of the average and variability Cereb. Cortex 15 639-45
15. Lois C and Alvarez-Buylla A 1993 Proliferating subventricular zone cells in the adult mammalian forebrain can differentiate into neurons and glia Proc. Natl Acad. Sci. USA 90 2074-7
16. Ma Y et al 2005 A three-dimensional digital atlas database of the adult C57BL/6J mouse brain by magnetic resonance microscopy Neuroscience 135 1203-15
17. Matinfar M, Ford E, Iordachita I, Wong J and Kazanzides P 2009 Image-guided small animal radiation research platform: calibration of treatment beam alignment Phys. Med. Biol. 54 891-905
18. Paxinos G and Franklin K B J 2001 The Mouse Brain in Stereotaxic Coordinates 2nd edn (San Diego, CA: Academic)
19. Pekar V, McNutt T R and Kaus M R 2004 Automated model-based organ delineation for radiotherapy planning in prostatic region Int. J. Radiat. Oncol. Biol. Phys. 60 973-80
20. Quĩones-Hinojosa A and Chaichana K 2007 The human subventricular zone: a source of new cells and a potential source of brain tumors Exp. Neurol. 205 313-24
21. Stojadinovic S et al 2007 MicroRT-small animal conformal irradiator Med. Phys. 34 4706-16
22. Toga A W, Samaie M and Payne B A 1989 Digital rat brain: a computerized atlas Brain Res. Bull. 22 323-33
23. Wong J et al 2008 High-resolution, small animal radiation research platform with x-ray tomographic guidance capabilities Int. J. Radiat. Oncol. Biol. Phys. 71 1591-99
24. Zhao C, Deng W and Gage F H 2008 Mechanisms and functional implications of adult neurogenesis Cell 132 645-60