메뉴 건너뛰기




Volumn 10, Issue , 2009, Pages

Evaluating annotations of an Agilent expression chip suggests that many features cannot be interpreted

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; AUTOSOME; BIOINFORMATICS; CHROMOSOMAL LOCALIZATION; DNA MICROARRAY; GENE EXPRESSION REGULATION; GENE MAPPING; GENETIC DATABASE; GENETIC TRANSCRIPTION; HUMAN; NUCLEOTIDE SEQUENCE; REPORTER GENE; SEQUENCE ALIGNMENT; VALIDITY; X CHROMOSOME; BIOLOGY; COMPUTER PROGRAM; EVALUATION; GENETICS; INTERNET; METHODOLOGY; MOLECULAR GENETICS; REPRODUCIBILITY;

EID: 71949091999     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-10-566     Document Type: Article
Times cited : (9)

References (22)
  • 2
    • 0033965855 scopus 로고    scopus 로고
    • The TIGR gene indices: reconstruction and representation of expressed gene sequences
    • 10.1093/nar/28.1.141, 102391, 10592205
    • Quackenbush J, Liang F, Holt I, Pertea G, Upton J. The TIGR gene indices: reconstruction and representation of expressed gene sequences. Nucleic Acids Res 2000, 28:141-145. 10.1093/nar/28.1.141, 102391, 10592205.
    • (2000) Nucleic Acids Res , vol.28 , pp. 141-145
    • Quackenbush, J.1    Liang, F.2    Holt, I.3    Pertea, G.4    Upton, J.5
  • 3
    • 33846057724 scopus 로고    scopus 로고
    • NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins
    • 10.1093/nar/gkl842, 1716718, 17130148
    • Pruitt KD, Tatusova T, Maglott DR. NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins. Nucleic Acids Res 2007, 35:D61-65. 10.1093/nar/gkl842, 1716718, 17130148.
    • (2007) Nucleic Acids Res , vol.35
    • Pruitt, K.D.1    Tatusova, T.2    Maglott, D.R.3
  • 4
    • 33846056843 scopus 로고    scopus 로고
    • Entrez Gene: gene-centered information at NCBI
    • Database issue, 10.1093/nar/gkl993, 1761442, 17148475
    • Maglott D, Ostell J, Pruitt KD, Tatusova T. Entrez Gene: gene-centered information at NCBI. Nucleic Acids Res 2007, 35(Database issue):D26-31. 10.1093/nar/gkl993, 1761442, 17148475.
    • (2007) Nucleic Acids Res , vol.35
    • Maglott, D.1    Ostell, J.2    Pruitt, K.D.3    Tatusova, T.4
  • 5
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
    • 10.1093/nar/25.17.3389, 146917, 9254694
    • Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 1997, 25:3389-3402. 10.1093/nar/25.17.3389, 146917, 9254694.
    • (1997) Nucleic Acids Res , vol.25 , pp. 3389-3402
    • Altschul, S.F.1    Madden, T.L.2    Schäffer, A.A.3    Zhang, J.4    Zhang, Z.5    Miller, W.6    Lipman, D.J.7
  • 7
    • 0034053725 scopus 로고    scopus 로고
    • A greedy algorithm for aligning DNA sequences
    • 10.1089/10665270050081478, 10890397
    • Zhang Z, Schwartz S, Wagner L, Miller W. A greedy algorithm for aligning DNA sequences. J Comput Biol 2000, 7:203-214. 10.1089/10665270050081478, 10890397.
    • (2000) J Comput Biol , vol.7 , pp. 203-214
    • Zhang, Z.1    Schwartz, S.2    Wagner, L.3    Miller, W.4
  • 8
    • 46649115430 scopus 로고    scopus 로고
    • Splign: algorithms for computing spliced alignments with identification of paralogs
    • 10.1186/1745-6150-3-20, 2440734, 18495041
    • Kapustin Y, Souvorov A, Tatusova T, Lipman DJ. Splign: algorithms for computing spliced alignments with identification of paralogs. Biology Direct 2008, 3:20. 10.1186/1745-6150-3-20, 2440734, 18495041.
    • (2008) Biology Direct , vol.3 , pp. 20
    • Kapustin, Y.1    Souvorov, A.2    Tatusova, T.3    Lipman, D.J.4
  • 9
    • 37249013306 scopus 로고    scopus 로고
    • Linking microarray reporters with protein functions
    • 10.1186/1471-2105-8-360, 2140066, 17897448
    • Gaj S, van Erk A, van Haaften RIM, Evelo CTA. Linking microarray reporters with protein functions. BMC Bioinformatics 2007, 8:360. 10.1186/1471-2105-8-360, 2140066, 17897448.
    • (2007) BMC Bioinformatics , vol.8 , pp. 360
    • Gaj, S.1    van Erk, A.2    van Haaften, R.I.M.3    Evelo, C.T.A.4
  • 10
    • 51549121187 scopus 로고    scopus 로고
    • Position of human chromosomes is conserved in mouse nuclei indicating a species-independent mechanism for maintaining genome organization
    • 10.1007/s00412-008-0171-7, 2614925, 18563425
    • Sengupta K, Camps J, Mathews P, Barenboim-Stapleton L, Nguyen QT, Difilippantonio MJ, Ried T. Position of human chromosomes is conserved in mouse nuclei indicating a species-independent mechanism for maintaining genome organization. Chromosoma 2008, 117:499-509. 10.1007/s00412-008-0171-7, 2614925, 18563425.
    • (2008) Chromosoma , vol.117 , pp. 499-509
    • Sengupta, K.1    Camps, J.2    Mathews, P.3    Barenboim-Stapleton, L.4    Nguyen, Q.T.5    Difilippantonio, M.J.6    Ried, T.7
  • 11
    • 57749092917 scopus 로고    scopus 로고
    • The stability of the ternary interferon-receptor complex rather than the affinity to the individual subunits dictates differential biological activities
    • 10.1074/jbc.M806019200, 18801736
    • Kalie E, Jaitin DA, Podoplelova Y, Piehler J, Schreiber G. The stability of the ternary interferon-receptor complex rather than the affinity to the individual subunits dictates differential biological activities. J Biol Chem 2008, 283:32925-32936. 10.1074/jbc.M806019200, 18801736.
    • (2008) J Biol Chem , vol.283 , pp. 32925-32936
    • Kalie, E.1    Jaitin, D.A.2    Podoplelova, Y.3    Piehler, J.4    Schreiber, G.5
  • 13
    • 47549101637 scopus 로고    scopus 로고
    • Gene expression changes associated with the anti-angiogenic activity of kallikrein-related peptidase (KLK3) on human umbilical vein endothelial cells
    • 10.1515/BC.2008.088, 18627292
    • Mattsson JM, Laakkonen P, Kilpinen S, Stenman U-H, Koistinen H. Gene expression changes associated with the anti-angiogenic activity of kallikrein-related peptidase (KLK3) on human umbilical vein endothelial cells. Biol Chem 2008, 389:765-771. 10.1515/BC.2008.088, 18627292.
    • (2008) Biol Chem , vol.389 , pp. 765-771
    • Mattsson, J.M.1    Laakkonen, P.2    Kilpinen, S.3    Stenman, U.-.H.4    Koistinen, H.5
  • 15
    • 58349085727 scopus 로고    scopus 로고
    • Gene profiles of a human alveolar epithelial cell line after in vitro exposure to respiratory (non-)sensitizing chemicals: Identification of discriminating genetic markers and pathway analysis
    • 10.1016/j.toxlet.2008.11.017, 19110044
    • Verstraelen S, Nelissen I, Hooyberghs J, Witters H, Schoeters G, Van Cauwenberge P, Heuvel R. Gene profiles of a human alveolar epithelial cell line after in vitro exposure to respiratory (non-)sensitizing chemicals: Identification of discriminating genetic markers and pathway analysis. Toxicol Lett 2009, 185:16-22. 10.1016/j.toxlet.2008.11.017, 19110044.
    • (2009) Toxicol Lett , vol.185 , pp. 16-22
    • Verstraelen, S.1    Nelissen, I.2    Hooyberghs, J.3    Witters, H.4    Schoeters, G.5    Van Cauwenberge, P.6    Heuvel, R.7
  • 16
    • 41949138130 scopus 로고    scopus 로고
    • Tumor suppressor LATS1 is a negative regulator of oncogene YAP
    • 10.1074/jbc.M709037200, 18158288
    • Hao Y, Chun A, Cheung K, Rashidi B, Yang X. Tumor suppressor LATS1 is a negative regulator of oncogene YAP. J Biol Chem 2008, 283:5496-5509. 10.1074/jbc.M709037200, 18158288.
    • (2008) J Biol Chem , vol.283 , pp. 5496-5509
    • Hao, Y.1    Chun, A.2    Cheung, K.3    Rashidi, B.4    Yang, X.5
  • 17
    • 46449119367 scopus 로고    scopus 로고
    • A novel 6C assay uncovers Polycomb-mediated higher order chromatin conformations
    • 10.1101/gr.073452.107, 2493406, 18502945
    • Tiwari VK, Cope L, McGarvey KM, Ohm JE, Baylin SB. A novel 6C assay uncovers Polycomb-mediated higher order chromatin conformations. Genome Res 2008, 18:1171-1179. 10.1101/gr.073452.107, 2493406, 18502945.
    • (2008) Genome Res , vol.18 , pp. 1171-1179
    • Tiwari, V.K.1    Cope, L.2    McGarvey, K.M.3    Ohm, J.E.4    Baylin, S.B.5
  • 18
    • 57349115215 scopus 로고    scopus 로고
    • GSK-3β-mediated serine phosphorylation of the human glucocortoid receptor re-directs gene expression profiles
    • 10.1128/MCB.00808-08, 2593428, 18838540
    • Galliher-Beckley AJ, Williams JG, Collins JB, Cidlowski JA. GSK-3β-mediated serine phosphorylation of the human glucocortoid receptor re-directs gene expression profiles. Mol Cell Biol 2008, 28:7309-7322. 10.1128/MCB.00808-08, 2593428, 18838540.
    • (2008) Mol Cell Biol , vol.28 , pp. 7309-7322
    • Galliher-Beckley, A.J.1    Williams, J.G.2    Collins, J.B.3    Cidlowski, J.A.4
  • 19
    • 67649280379 scopus 로고    scopus 로고
    • Use of gene expression profiles of peripheral blood lymphocytes to distinguish BRCA1 Mutation carriers in high risk breast cancer families
    • 2664702, 19352458
    • Vuillaume M-L, Uhrhammer N, Vidal V, Vidal VS, Chabaud V, Jesson B, Kwiatkowski F, Bignon Y-J. Use of gene expression profiles of peripheral blood lymphocytes to distinguish BRCA1 Mutation carriers in high risk breast cancer families. Cancer Inform 2009, 7:41-56. 2664702, 19352458.
    • (2009) Cancer Inform , vol.7 , pp. 41-56
    • Vuillaume, M.-.L.1    Uhrhammer, N.2    Vidal, V.3    Vidal, V.S.4    Chabaud, V.5    Jesson, B.6    Kwiatkowski, F.7    Bignon, Y.-.J.8


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.