Structure of Helicobacter pylori L-asparaginase at 1.4 Å resolution

Acta Crystallographica Section D: Biological Crystallography

Volumn 65, Issue 12, 2009, Pages 1253-1261

  Dhavala, Prathusha ^a   Papageorgiou, Anastassios C ^a  

^a UNIVERSITY OF TURKU   (Finland)

Author keywords

Active site; L asparaginases; Leukaemia treatment; Therapeutic enzymes

Indexed keywords

ASPARAGINASE; PROTEIN SUBUNIT;

AMINO ACID SEQUENCE; ARTICLE; CHEMICAL STRUCTURE; CHEMISTRY; ENZYME ACTIVE SITE; ENZYMOLOGY; HELICOBACTER PYLORI; METABOLISM; MOLECULAR GENETICS; PROTEIN MULTIMERIZATION; PROTEIN QUATERNARY STRUCTURE; PROTEIN TERTIARY STRUCTURE; SEQUENCE ALIGNMENT; STRUCTURAL HOMOLOGY; X RAY CRYSTALLOGRAPHY;

AMINO ACID SEQUENCE; ASPARAGINASE; CATALYTIC DOMAIN; CRYSTALLOGRAPHY, X-RAY; HELICOBACTER PYLORI; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; PROTEIN MULTIMERIZATION; PROTEIN STRUCTURE, QUATERNARY; PROTEIN STRUCTURE, TERTIARY; PROTEIN SUBUNITS; SEQUENCE ALIGNMENT; STRUCTURAL HOMOLOGY, PROTEIN;

BACTERIA (MICROORGANISMS); ERWINIA CHRYSANTHEMI; ESCHERICHIA COLI; HELICOBACTER PYLORI;

EID: 71949084250     PISSN: 09074449     EISSN: 13990047     Source Type: Journal    
DOI: 10.1107/S0907444909038244     Document Type: Article

References (44)

1. Aghaiypour, K., Wlodawer, A. & Lubkowski, J. (2001). Biochemistry, 40, 5655-5664.
2. Aung, H. P., Bocola, M., Schleper, S. & Rohm, K. H. (2000). Biochim. Biophys. Acta, 1481, 349-359.
3. Avramis, V. & Panosyan, E. (2005). Clin. Pharmacokinet.
4. Bridges, J. (1968). Lancet, 2, 1299.
5. Campbell, H. A., Mashburn, L. T., Boyse, E. A. & Old, L. J. (1967). Biochemistry, 6, 721-730.
6. Cappelletti, D., Chiarelli, L. R., Pasquetto,M. V., Stivala, S., Valentini, G. & Scotti, C. (2008). Biochem. Biophys. Res. Commun. 377, 1222-1226.
7. Collaborative Computational Project, Number 4 (1994). Acta Cryst. D50, 760-763.
8. Cruickshank, D. W. J. (1999). Acta Cryst. D55, 583-601.
9. Derst, C., Henseling, J. & Rohm, K. H. (2000). Protein Sci. 9, 2009-2017.
10. Derst, C., Wehner, A., Specht, V. & Röhm, K. H. (1994). Eur. J. Biochem. 224, 533-540.
11. Dhavala, P., Krasotkina, J., Dubreuil, C. & Papageorgiou, A. C. (2008). Acta Cryst. F64, 740-742.
12. Diederichs, K. & Karplus, P. A. (1997). Nature Struct. Biol. 4, 269-275.
13. Dunlop, K. V., Irvin, R. T. & Hazes, B. (2005). Acta Cryst. D61, 80-87.
14. Duval, M., Suciu, S., Ferster, A., Rialland, X., Nelken, B., Lutz, P., Benoit, Y., Robert, A., Manel, A. M., Vilmer, E., Otten, J. & Philippe, N. (2002). Blood, 99, 2734-2739.
15. Emsley, P. & Cowtan, K. (2004). Acta Cryst. D60, 2126-2132.
16. Gladilina, I. A., Sokolov, N. N. & Krasotkina, I. V. (2008). Biomed. Khim. 54, 482-486.
17. Gouet, P., Courcelle, E., Stuart, D. I. & Métoz, F. (1999). Bioinformatics, 15, 305-308.
18. Gökbuget, N. & Hoelzer D. (2006). Hematology. American Society of Hematology Education Program Book 133-141.
19. Kabsch, W. (1993). J. Appl. Cryst. 26, 795-800.
20. Kabsch, W. & Sander, C. (1983). Biopolymers, 22, 2577-2637.
21. Krasotkina, J., Borisova, A. A., Gervaziev, Y. V. & Sokolov, N. N. (2004). Biotechnol. Appl. Biochem. 39, 215-221.
22. Kravchenko, O. V., Kislitsin, Y. A., Popov, A. N., Nikonov, S. V. & Kuranova, I. P. (2008). Acta Cryst. D64, 248-256.
23. Krissinel, E. & Henrick, K. (2004). Acta Cryst. D60, 2256-2268.
24. Laskowski, R. A., MacArthur, M. W., Moss, D. S. & Thornton, J. M. (1993). J. Appl. Cryst. 26, 283-291.
25. Lovell, S. C., Davis, I. W., Arendall, W. B. III, de Bakker, P. I., Word, J. M., Prisant, M. G., Richardson, J. S. & Richardson, D. C. (2003). Proteins, 50, 437-450.
26. Lubkowski, J., Dauter, M., Aghaiypour, K., Wlodawer, A. & Dauter, Z. (2003). Acta Cryst. D59, 84-92.
27. Lubkowski, J., Palm, G. J., Gilliland, G. L., Derst, C., Röhm, K. H. & Wlodawer, A. (1996). Eur. J. Biochem. 241, 201-207.
28. Lubkowski, J., Wlodawer, A., Ammon, H. L., Copeland, T. D. & Swain, A. L. (1994). Biochemistry, 33, 10257-10265.
29. Lubkowski, J., Wlodawer, A., Housset, D., Weber, I. T., Ammon, H. L., Murphy, K. C. & Swain, A. L. (1994). Acta Cryst. D50, 826-832.
30. Mashburn, L. T. & Wriston, J. C. Jr (1964). Arch. Biochem. Biophys. 105, 450-452.
31. McCoy, A. J., Grosse-Kunstleve, R. W., Adams, P. D., Winn, M. D., Storoni, L. C. & Read, R. J. (2007). J. Appl. Cryst. 40, 658-674.
32. Miller, M., Rao, J., Wlodawer, A. & Gribskov, M. (1993). FEBS Lett. 328, 275-279.
33. Muller, H. J. & Boos, J. (1998). Crit. Rev. Oncol. Hematol. 28, 97-113.
34. Murshudov, G. N., Vagin, A. A. & Dodson, E. J. (1997). Acta Cryst. D53, 240-255.
35. Ollenschläger, G., Roth, E., Linkesch, W., Jansen, S., Simmel, A. & Mödder, B. (1988). Eur. J. Clin. Invest. 18, 512-516.
36. Ortlund, E., Lacount, M. W., Lewinski, K. & Lebioda, L. (2000). Biochemistry, 39, 1199-1204.
37. Otwinowski, Z. & Minor,W. (1997). Methods Enzymol. 276, 307-326.
38. Papageorgiou, A. C., Posypanova, G. A., Andersson, C. S., Sokolov, N. N. & Krasotkina, J. (2008). FEBS J. 275, 4306-4316.
39. Richards, N. & Kilberg, M. (2006). Annu. Rev. Biochem. 75, 629-654.
40. Sanches, M., Krauchenco, S. & Polikarpov, I. (2007). Curr. Chem. Biol. 1, 75-86.
41. Sheldrick, G. M. (2008). Acta Cryst. A64, 112-122.
42. Stams, W., den Boer, M., Beverloo, H., van Wering, E. & Pieters, R. (2005). Leukemia, 19, 318-319.
43. Swain, A. L., Jaskólski, M., Housset, D., Rao, J. K. & Wlodawer, A. (1993). Proc. Natl Acad. Sci. USA, 90, 1474-1478.
44. Verma, N., Kumar, K., Kaur, G. & Anand, S. (2007). Crit. Rev. Biotechnol. 27, 45-62.