Detection of enzyme-catalyzed polysaccharide synthesis on surfaces

Biocatalysis and Biotransformation

Volumn 28, Issue 1, 2010, Pages 64-71

  Clé, Carla ^a   Martin, Cathie ^a   Field, Robert A ^a   Kuzmič, Petr ^b   Bornemann, Stephen ^a  

^a JOHN INNES CENTRE   (United Kingdom)

^b BioKin Ltd   (United States)

Author keywords

Catalysis; Enzyme; Kinetics; Polysaccharide; Surface; Surface plasmon resonance spectroscopy

Indexed keywords

BIOLOGICAL PROBLEMS; CELL WALLS; CELLULAR COMPONENTS; CLASSICAL SOLUTIONS; INDUSTRIAL PROBLEM; REAL TIME; STARCH GRANULES; STATE ANALYSIS; SURFACE CATALYSIS; SURFACE PLASMON RESONANCE SPECTROSCOPY;

BIOCHEMISTRY; CATALYSIS; ENZYMES; PARTICLE DETECTORS; PLASMONS; SELF ASSEMBLY;

SURFACE PLASMON RESONANCE;

ENZYME; ESTRADIOL BENZOATE PLUS PROGESTERONE; POLYSACCHARIDE; STARCH;

BIOCATALYST; CARBOHYDRATE SYNTHESIS; CATALYSIS; CELL SURFACE; CELL WALL; CELLS AND CELL COMPONENTS; ENZYMATIC DEGRADATION; ENZYME KINETICS; ENZYMOLOGY; MONITORING; REVIEW; SPECTROSCOPY; SURFACE PLASMON RESONANCE;

EID: 71549142345     PISSN: 10242422     EISSN: 10292446     Source Type: Journal    
DOI: 10.3109/10242420903388744     Document Type: Review

References (66)

1. Ball SG, Morell MK. 2003. From bacterial glycogen to starch: understanding the biogenesis of the plant starch granule. Annu Rev Plant Biol 54:207-233.
2. Ban L, Mrksich M. 2008. On-chip synthesis and label-free assays of oligosaccharide arrays. Angew Chem Int Ed 47: 3396-3399.
3. Blixt O, Allin K, Bohorov O, Liu XF, Andersson-Sand H, Hoffmann J, Razi N. 2008. Glycan microarrays for screening sialyltransferase specificities. Glycoconj J 25:59-68.
4. Bryan MC, Lee LV, Wong CH. 2004. High-throughput identifi cation of fucosyltransferase inhibitors using carbohydrate microarrays. Bioorg Med Chem Lett 14:3185-3188.
5. Buckle M, Williams RM, Negroni M, Buc H. 1996. Real time measurements of elongation by a reverse transcriptase using surface plasmon resonance. Proc Natl Acad Sci U S A 93: 889-894.
6. Cle C, Gunning AP, Syson K, Bowater L, Field RA, Bornemann S. 2008. Detection of transglucosidase-catalyzed polysaccharide synthesis on a surface in real-time using surface plasmon resonance spectroscopy. J Am Chem Soc 130:15234-15235.
7. Cote GL. 2002. Alternan. In: Steinbuchel A, editor. Biopolymers. Weinheim: Wiley-VCH. pp 323-350.
8. Coullerez G, Seeberger PH, Textor M. 2006. Merging organic and polymer chemistries to create glycomaterials for glycomics applications. Macromol Biosci 6:634-647.
9. Donovan RS, Datti A, Baek MG, Wu QQ, Sas IJ, Korczak B, Berger EG, Roy R, Dennis JW. 1999. A solid-phase glycosyltransferase assay for high-throughput screening in drug discovery research. Glycoconj J 16:607-615.
10. Edwards A, Borthakur A, Bornemann S, Venail J, Denyer K, Waite D, Fulton D, Smith A, Martin C. 1999. Specificity of starch synthase isoforms from potato. Eur J Biochem 266:724-736.
11. Fang S, Lee HJ, Wark AW, Kim HM, Corn RM. 2005. Determination of ribonuclease H surface enzyme kinetics by surface plasmon resonance imaging and surface plasmon fl uorescence spectroscopy. Anal Chem 77:6528-6534.
12. Fioretto D, Comez L, Gallina ME, Morresi A, Palmieri L, Paolantoni M, Sassi P, Scarponi F. 2007. Separate dynamics of solute and solvent in water-glucose solutions by depolarized light scattering. Chem Phys Lett 441:232-236.
13. Foose LL, Blanch HW, Radke CJ. 2007. Immobilized protein films for assessing surface proteolysis kinetics. J Biotechnol 132:32-37.
14. Gaspers PB, Robertson CR, Gast AP. 1994. Enzymes on immobilized substrate surfaces - diffusion. Langmuir 10:2699-2704.
15. Gaspers PB, Gast AP, Robertson CR. 1995. Enzymes on immobilized substrate surfaces - reaction. J Colloid Interface Sci 172:518-529.
16. Goldstein IJ, Hollerman Ce, Smith EE. 1965. Protein- carbohydrate interactions. II. Inhibition studies on the interaction of concanavalin A with polysaccharides. Biochemistry 4:876-883.
17. Gutierrez OA, Salas E, Hernandez Y, Lissi EA, Castrillo G, Reyes O, Garay H, Aguilar A, Garcia B, Otero A, Chavez MA, Duarte CA. 2002. An immunoenzymatic solid-phase assay for quantitative determination of HIV-1 protease activity. Anal Biochem 307:18-24.
18. Gutierrez OA, Chavez M, Lissi E. 2004. A theoretical approach to some analytical properties of heterogeneous enzymatic assays. Anal Chem 76:2664-2668.
19. Halling PJ, Ulijn RV, Flitsch SL. 2005. Understanding enzyme action on immobilised substrates. Curr Opin Biotechnol 16:385-392.
20. Houseman BT, Mrksich M. 2002. Carbohydrate arrays for the evaluation of protein binding and enzymatic modifi cation. Chem Biol 9:443-454.
21. Jabbour A, Shemesh M, Srebnik M, Zaks B, Steinberg D. 2007. Effect of oxazaborolidines on immobilized fructosyltransferase analyzed by surface plasmon resonance. Biosens Bioelectron 22:1658-1663.
22. Josefsson P, Henriksson G, Wagberg L. 2008. The physical action of cellulases revealed by a quartz crystal microbalance study using ultrathin cellulose films and pure cellulases. Biomacromolecules 9:249-254.
23. Kim JH, Roy S, Kellis JT, Poulose AJ, Gast AP, Robertson CR. 2002. Protease adsorption and reaction on an immobilized substrate surface. Langmuir 18:6312-6318.
24. Kim YR, Paik HJ, Ober CK, Coates GW, Mark SS, Ryan TE, Batt CA. 2006. Real-time analysis of enzymatic surfaceinitiated polymerization using surface plasmon resonance (SPR). Macromol Biosci 6:145-152.
25. Kuzmič P. 1996. Program DynaFit for the analysis of enzyme kinetic data: application to HIV proteinase. Anal Biochem 237:260-273.
26. Lagerholm BC, Thompson NL. 2000. Temporal dependence of ligand dissociation and rebinding at planar surfaces. J Phys Chem B 104:863-868.
27. Larsen K, Thygesen MB, Guillaumie F, Willats WGT, Jensen KJ. 2006. Solid-phase chemical tools for glycobiology. Carbohydr Res 341:1209-1234.
28. Laurent N, Haddoub R, Flitsch SL. 2008a. Enzyme catalysis on solid surfaces. Trends Biotechnol 26:328-337.
29. Laurent N, Voglmeir J, Wright A, Blackburn J, Pham NT, Wong SCC, Gaskell SJ, Flitsch SL. 2008b. Enzymatic glycosylation of peptide arrays on gold surfaces. ChemBioChem 9:883-887.
30. Lee HJ, Wark AW, Goodrich TT, Fang SP, Corn RM. 2005. Surface enzyme kinetics for biopolymer microarrays: a combination of Langmuir and Michaelis-Menten concepts. Langmuir 21:4050-4057.
31. Lee HJ, Wark AW, Corn RM. 2006. Creating advanced multifunctional biosensors with surface enzymatic transformations. Langmuir 22:5241-5250.
32. Liedberg B, Lundstrom I, Stenberg E. 1993. Principles of biosensing with an extended coupling matrix and surface plasmon resonance. Sens Actuator B 11:63-72.
33. Lieto AM, Lagerholm BC, Thompson NL. 2003. Lateral diffusion from ligand dissociation and rebinding at surfaces. Langmuir 19:1782-1787.
34. Lofas S, Johnsson B. 1990. A novel hydrogel matrix on gold surfaces in surface-plasmon resonance sensors for fast and efficient covalent immobilization of ligands. J Chem Soc Chem Commun 1526-1528.
35. Lynd LR, Weimer PJ, van Zyl WH, Pretorius IS. 2002. Microbial cellulose utilization: fundamentals and biotechnology. Microbiol Mol Biol Rev 66:506-577.
36. Matsuo N, Nomura T, Imokawa G. 1992. A rapid and simple assay method for UDP-glucose ceramide glucosyltransferase. BBA Gen Subjects 1116:97-103.
37. Monchois V, Willemot RM, Monsan P. 1999. Glucansucrases: mechanism of action and structure-function relationships. FEMS Microbiol Rev 23:131-151.
38. Murakawa A, Mori T, Okahata Y. 2007. Direct monitoring of both phosphorolysis and elongation of amylopectin catalyzed by phosphorylase on a 27 MHz quartz-crystal microbalance. Chem Lett 36:312-313.
39. Myszka DG. 1997. Kinetic analysis of macromolecular interactions using surface plasmon resonance biosensors. Curr Opin Biotechnol 8:50-57.
40. Myszka DG, He X, Dembo M, Morton TA, Goldstein B. 1998. Extending the range of rate constants available from BIACORE: interpreting mass transport-infl uenced binding data. Biophys J 75:583-594.
41. Nagahori N, Niikura K, Sadamoto R, Taniguchi M, Yamagishi A, Monde K, Nishimura SI. 2003. Glycosyltransferase microarray displayed on the glycolipid LB membrane. Adv Synth Catal 345:729-734.
42. Nayak S, Yeo WS, Mrksich M. 2007. Determination of kinetic parameters for interfacial enzymatic reactions on self-assembled monolayers. Langmuir 23:5578-5583. (Pubitemid 46826508)
43. Nilsson P, Persson B, Uhlen M, Nygren PA. 1995. Real-time monitoring of DNA manipulations using biosensor technology. Anal Biochem 224:400-408.
44. Nishino H, Murakawa A, Mori T, Okahata Y. 2004a. Kinetic studies of AMP-dependent phosphorolysis of amylopectin catalyzed by phosphorylase b on a 27 MHz quartz-crystal microbalance. J Am Chem Soc 126:14752-14757.
45. Nishino H, Nihira T, Mori T, Okahata Y. 2004b. Direct monitoring of enzymatic glucan hydrolysis on a 27 MHz quartz-crystal microbalance. J Am Chem Soc 126:2264-2265.
46. Nordgren N, Eklof J, Zhou Q, Brumer H, Rutland MW. 2008. Top-down grafting of xyloglucan to gold monitored by QCM-D and AFM: enzymatic activity and interactions with cellulose. Biomacromolecules 9:942-948.
47. Park S, Shin I. 2007. Carbohydrate microarrays for assaying galactosyltransferase activity. Org Lett 9:1675-1678.
48. Plath C, Weimar T, Peters H, Peters T. 2006. Assaying sialyltransferase activity with surface plasmon resonance. ChemBioChem 7:1226-1230.
49. Ratner DM, Adams EW, Disney MD, Seeberger PH. 2004. Tools for glycomics: mapping interactions of carbohydrates in biological systems. ChemBioChem 5:1375-1383.
50. Rich RL, Myszka DG. 2006. Survey of the year 2005 commercial optical biosensor literature. J Mol Recognit 19:478-534.
51. Roy S, Thomas JM, Holmes EA, Kellis JT, Poulose AJ, Robertson CR, Gast AP. 2005. Simultaneous observation of enzyme surface diffusion and surface reaction using microfl uidic patterning of substrate surfaces. Anal Chem 77: 8146-8150.
52. Sasaki T, Noel TR, Ring SG. 2008. Study on α-amylase hydrolysis of potato amylopectin by a quartz crystal microbalance. J Agric Food Chem 56:1091-1096.
53. Schuck P, Minton AP. 1996. Analysis of mass transport-limited binding kinetics in evanescent wave biosensors. Anal Biochem 240:262-272.
54. Schuck P, Millar DB, Kortt AA. 1998. Determination of binding constants by equilibrium titration with circulating sample in a surface plasmon resonance biosensor. Anal Biochem 265: 79-91.
55. Shemesh M, Steinberg D. 2006. Surface plasmon resonance for real-time evaluation of immobilized fructosyltransferase activity. J Microbiol Methods 64:411-415.
56. Shin I, Tae J, Park S. 2007. Carbohydrate microarray technology for functional glycomics. Curr Chem Biol 1:187-199.
57. Shipp M, Nadella R, Gao H, Farkas V, Sigrist H, Faik A. 2008. Glyco-array technology for effi cient monitoring of plant cell wall glycosyltransferase activities. Glycoconj J 25:49-58.
58. Spencelayh MJ, Cheng YL, Bushby RJ, Bugg TDH, Li JJ, Henderson PLF, O'Reilly J, Evans SD. 2006. Antibiotic action and peptidoglycan formation on tethered lipid bilayer membranes. Angew Chem Int Ed 45:2111-2116.
59. Star A, Joshi V, Han TR, Altoe MVP, Gruner G, Stoddart JF. 2004. Electronic detection of the enzymatic degradation of starch. Org Lett 6:2089-2092.
60. Stenberg E, Persson B, Roos H, Urbaniczky C. 1991. Quantitative determination of surface concentration of protein with surface plasmon resonance using radiolabeled proteins. J Colloid Interface Sci 143:513-526.
61. Trigiante G, Gast AP, Robertson CR. 1999. Pseudo fi rst-order cleavage of an immobilized substrate by an enzyme undergoing two-dimensional surface diffusion. J Colloid Interface Sci 213:81-86.
62. Turnbull JE, Field RA. 2007. Emerging glycomics technologies. Nat Chem Biol 3:74-77.
63. Wegner GJ, Wark AW, Lee HJ, Codner E, Saeki T, Fang SP, Corn RM. 2004. Real-time surface plasmon resonance imaging measurements for the multiplexed determination of protein adsorption/desorption kinetics and surface enzymatic reactions on peptide microarrays. Anal Chem 76:5677-5684.
64. Yeo WS, Mrksich M. 2003. Self-assembled monolayers that transduce enzymatic activities to electrical signals. Angew Chem Int Ed 42:3121-3124.
65. Yu SL, Wang N, Liou CY, Syu WJ. 1995. Assay of HIV-1 protease activity by use of crude preparations of enzyme and biotinylated substrate. J Virol Methods 53:63-73.
66. Zhi ZL, Laurent N, Powell AK, Karamanska R, Fais M, Voglmeir J, Wright A, Blackburn JM, Crocker PR, Russell DA, Flitsch S, Field RA, Turnbull JE. 2008. A versatile gold surface approach for fabrication and interrogation of glycoarrays. ChemBioChem 9:1568-1575.