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Volumn 10, Issue SUPPL. 3, 2009, Pages

A model selection approach to discover age-dependent gene expression patterns using quantile regression models

Author keywords

[No Author keywords available]

Indexed keywords

AGING; ARTICLE; CONTROLLED STUDY; GENE EXPRESSION; GENE EXPRESSION PROFILING; GENETIC IDENTIFICATION; GENETIC VARIABILITY; HUMAN; INTERMETHOD COMPARISON; MICROARRAY ANALYSIS; REGRESSION ANALYSIS; SIMULATION; ADOLESCENT; ADULT; AGED; BIOLOGICAL MODEL; BIOMIMETICS; BRAIN; BRAIN LEVEL; CHILD; INFANT; METABOLISM; METHODOLOGY; MIDDLE AGED; NEWBORN; NONLINEAR SYSTEM; PRESCHOOL CHILD;

EID: 71549138682     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-10-S3-S16     Document Type: Article
Times cited : (7)

References (43)
  • 1
    • 33748289520 scopus 로고    scopus 로고
    • How genetic analysis tests theories of animal aging
    • 10.1038/ng1881, 16941009
    • Hekimi S. How genetic analysis tests theories of animal aging. Nat Genet 2006, 38:985-991. 10.1038/ng1881, 16941009.
    • (2006) Nat Genet , vol.38 , pp. 985-991
    • Hekimi, S.1
  • 2
    • 3042631024 scopus 로고    scopus 로고
    • Gene regulation and DNA damage in the aging human brain
    • 10.1038/nature02661, 15190254
    • Lu T, Pan Y, Kao SY, Li C, Kohane I, Chan J, Yankner BA. Gene regulation and DNA damage in the aging human brain. Nature 2004, 429:883-891. 10.1038/nature02661, 15190254.
    • (2004) Nature , vol.429 , pp. 883-891
    • Lu, T.1    Pan, Y.2    Kao, S.Y.3    Li, C.4    Kohane, I.5    Chan, J.6    Yankner, B.A.7
  • 3
    • 16344374524 scopus 로고    scopus 로고
    • Aging-associated changes in cardiac gene expression
    • 10.1016/j.cardiores.2004.11.016, 15820188
    • Volkova M, Garg R, Dick S, Boheler KR. Aging-associated changes in cardiac gene expression. Cardiovasc Res 2005, 66:194-204. 10.1016/j.cardiores.2004.11.016, 15820188.
    • (2005) Cardiovasc Res , vol.66 , pp. 194-204
    • Volkova, M.1    Garg, R.2    Dick, S.3    Boheler, K.R.4
  • 7
    • 63549135460 scopus 로고    scopus 로고
    • Meta-analysis of age-related gene expression profiles identifies common signatures of aging
    • 10.1093/bioinformatics/btp073, 19189975
    • de Magalhães JP, Curado J, Church GM. Meta-analysis of age-related gene expression profiles identifies common signatures of aging. Bioinformatics 2009, 25:875-881. 10.1093/bioinformatics/btp073, 19189975.
    • (2009) Bioinformatics , vol.25 , pp. 875-881
    • de Magalhães, J.P.1    Curado, J.2    Church, G.M.3
  • 8
    • 33646549289 scopus 로고    scopus 로고
    • Gene expression becomes heterogeneous with age
    • 10.1016/j.cub.2006.04.024, 16713941
    • Somel M, Khaitovich P, Bahn S, Pääbo S, Lachmann M. Gene expression becomes heterogeneous with age. Curr Biol 2006, 16:R359-R360. 10.1016/j.cub.2006.04.024, 16713941.
    • (2006) Curr Biol , vol.16
    • Somel, M.1    Khaitovich, P.2    Bahn, S.3    Pääbo, S.4    Lachmann, M.5
  • 9
    • 58049198417 scopus 로고    scopus 로고
    • Age-Dependent Variability in Gene Expression in Male Fischer 344 Rat Retina
    • 10.1093/toxsci/kfn215, 18936298
    • Li Z, Wright FA, Royland J. Age-Dependent Variability in Gene Expression in Male Fischer 344 Rat Retina. Toxicol Sci 2009, 107:281-29. 10.1093/toxsci/kfn215, 18936298.
    • (2009) Toxicol Sci , vol.107 , pp. 281-329
    • Li, Z.1    Wright, F.A.2    Royland, J.3
  • 10
    • 46249103142 scopus 로고    scopus 로고
    • Differential variability analysis of gene expression and its application to human diseases
    • 10.1093/bioinformatics/btn142, 2718620, 18586739
    • Ho JWK, Stefani M, dos Remedios CG, Charleston MA. Differential variability analysis of gene expression and its application to human diseases. Bioinformatics 2008, 24(13):i390-i398. 10.1093/bioinformatics/btn142, 2718620, 18586739.
    • (2008) Bioinformatics , vol.24 , Issue.13
    • Ho, J.W.K.1    Stefani, M.2    dos Remedios, C.G.3    Charleston, M.A.4
  • 12
    • 8844277626 scopus 로고    scopus 로고
    • Analyzing time-series gene expression data
    • 10.1093/bioinformatics/bth283, 15130923
    • Bar-Joseph Z. Analyzing time-series gene expression data. Bioinformatics 2004, 20:2493-2503. 10.1093/bioinformatics/bth283, 15130923.
    • (2004) Bioinformatics , vol.20 , pp. 2493-2503
    • Bar-Joseph, Z.1
  • 13
    • 35348872479 scopus 로고    scopus 로고
    • Analysis of Time-Series Gene Expression Data: Methods, Challenges, and Opportunities
    • 10.1146/annurev.bioeng.9.060906.151904, 17341157
    • Androulakis I, Yang E, Almon RR. Analysis of Time-Series Gene Expression Data: Methods, Challenges, and Opportunities. Annu Rev Biomed Eng 2007, 9:205-228. 10.1146/annurev.bioeng.9.060906.151904, 17341157.
    • (2007) Annu Rev Biomed Eng , vol.9 , pp. 205-228
    • Androulakis, I.1    Yang, E.2    Almon, R.R.3
  • 14
    • 84925105967 scopus 로고    scopus 로고
    • Cambridge University Press, New York, USA
    • Koenker R. Quantile Regression 2005, Cambridge University Press, New York, USA.
    • (2005) Quantile Regression
    • Koenker, R.1
  • 17
    • 0032923250 scopus 로고    scopus 로고
    • Estimating effects of limiting factors with regression quantiles
    • Cade BS, Terrell JW, Schroeder RL. Estimating effects of limiting factors with regression quantiles. Ecology 1999, 80:311-323.
    • (1999) Ecology , vol.80 , pp. 311-323
    • Cade, B.S.1    Terrell, J.W.2    Schroeder, R.L.3
  • 18
    • 33845251804 scopus 로고    scopus 로고
    • A gentle introduction to quantile regression for ecologists
    • Cade BS, Noon BR. A gentle introduction to quantile regression for ecologists. Front Ecol Environ 2003, 1:412-420.
    • (2003) Front Ecol Environ , vol.1 , pp. 412-420
    • Cade, B.S.1    Noon, B.R.2
  • 19
    • 16344367718 scopus 로고    scopus 로고
    • Quantile smoothing of array CGH data
    • 10.1093/bioinformatics/bti148, 15572474
    • Eilers PH, de Menezes RX. Quantile smoothing of array CGH data. Bioinformatics 2005, 21:1146-1153. 10.1093/bioinformatics/bti148, 15572474.
    • (2005) Bioinformatics , vol.21 , pp. 1146-1153
    • Eilers, P.H.1    de Menezes, R.X.2
  • 20
    • 34548800295 scopus 로고    scopus 로고
    • Analysis of array CGH data for cancer studies using fused quantile regression
    • 10.1093/bioinformatics/btm364, 17644559
    • Li Y, Zhu J. Analysis of array CGH data for cancer studies using fused quantile regression. Bioinformatics 2007, 23:2470-2476. 10.1093/bioinformatics/btm364, 17644559.
    • (2007) Bioinformatics , vol.23 , pp. 2470-2476
    • Li, Y.1    Zhu, J.2
  • 21
    • 47749121024 scopus 로고    scopus 로고
    • A novel application of quantile regression for identification of biomarkers exemplified by equine cartilage microarray data
    • 10.1186/1471-2105-9-300, 2474617, 18597687
    • Huang L, Zhu W, Saunders CP, MacLeod JN, Zhou M, Stromberg AJ, Bathke AC. A novel application of quantile regression for identification of biomarkers exemplified by equine cartilage microarray data. BMC Bioinformatics 2008, 9:300. 10.1186/1471-2105-9-300, 2474617, 18597687.
    • (2008) BMC Bioinformatics , vol.9 , pp. 300
    • Huang, L.1    Zhu, W.2    Saunders, C.P.3    MacLeod, J.N.4    Zhou, M.5    Stromberg, A.J.6    Bathke, A.C.7
  • 22
    • 40749141227 scopus 로고    scopus 로고
    • An R package for outlier detection using quantile regression on mass spectrometry data
    • 10.1093/bioinformatics/btn012, 18187441
    • Cho H, Kim Y, Jung HJ, Lee SW, Lee JW. an R package for outlier detection using quantile regression on mass spectrometry data. Bioinformatics 2008, 24:882-884. 10.1093/bioinformatics/btn012, 18187441.
    • (2008) Bioinformatics , vol.24 , pp. 882-884
    • Cho, H.1    Kim, Y.2    Jung, H.J.3    Lee, S.W.4    Lee, J.W.5
  • 24
    • 65249096681 scopus 로고    scopus 로고
    • Roles of BLOC-1 and adaptor protein-3 complexes in cargo sorting to synaptic vesicles
    • 10.1091/mbc.E08-05-0456, 2649275, 19144828
    • Newell-Litwa K, Salazar G, Smith Y, Faundez V. Roles of BLOC-1 and adaptor protein-3 complexes in cargo sorting to synaptic vesicles. Mol Biol Cell 2009, 20:1441-1453. 10.1091/mbc.E08-05-0456, 2649275, 19144828.
    • (2009) Mol Biol Cell , vol.20 , pp. 1441-1453
    • Newell-Litwa, K.1    Salazar, G.2    Smith, Y.3    Faundez, V.4
  • 25
    • 0036181858 scopus 로고    scopus 로고
    • Neuregulin signaling via erbB receptor assemblies in the nervous system
    • 10.1385/MN:25:1:067, 11890458
    • Murphy S, Krainock R, Tham M. Neuregulin signaling via erbB receptor assemblies in the nervous system. Mol Neurobiol 2002, 25:67-77. 10.1385/MN:25:1:067, 11890458.
    • (2002) Mol Neurobiol , vol.25 , pp. 67-77
    • Murphy, S.1    Krainock, R.2    Tham, M.3
  • 26
    • 60549111992 scopus 로고    scopus 로고
    • The adaptive brain: aging and neurocognitive scaffolding
    • 10.1146/annurev.psych.59.103006.093656, 19035823
    • Park D, Reuter-Lorenz P. The adaptive brain: aging and neurocognitive scaffolding. Annu Rev Psychol 2009, 60:173-196. 10.1146/annurev.psych.59.103006.093656, 19035823.
    • (2009) Annu Rev Psychol , vol.60 , pp. 173-196
    • Park, D.1    Reuter-Lorenz, P.2
  • 28
    • 0030876040 scopus 로고    scopus 로고
    • Age-related decreases in mRNA for brain nuclear receptors and target genes are reversed by retinoic acid treatment
    • 10.1016/S0304-3940(97)00424-2, 9223607
    • Enderlin V, Pallet V, Alfos S, Dargelos E, Jaffard R, Garcin H, Higueret P. Age-related decreases in mRNA for brain nuclear receptors and target genes are reversed by retinoic acid treatment. Neurosci Lett 1997, 229:125-129. 10.1016/S0304-3940(97)00424-2, 9223607.
    • (1997) Neurosci Lett , vol.229 , pp. 125-129
    • Enderlin, V.1    Pallet, V.2    Alfos, S.3    Dargelos, E.4    Jaffard, R.5    Garcin, H.6    Higueret, P.7
  • 29
    • 0035191978 scopus 로고    scopus 로고
    • Selective age-related changes in the PKC-sensitive, calmodulin-binding protein, neurogranin, in the mouse brain
    • 10.1046/j.1471-4159.2001.00646.x, 11723178
    • Mons N, Enderlin V, Jaffard R, Higueret P. Selective age-related changes in the PKC-sensitive, calmodulin-binding protein, neurogranin, in the mouse brain. J Neurochem 2001, 79:859-867. 10.1046/j.1471-4159.2001.00646.x, 11723178.
    • (2001) J Neurochem , vol.79 , pp. 859-867
    • Mons, N.1    Enderlin, V.2    Jaffard, R.3    Higueret, P.4
  • 30
    • 0034633680 scopus 로고    scopus 로고
    • Involvement of neurogranin in the modulation of calcium/calmodulin-dependent protein kinase II, synaptic plasticity, and spatial learning: A study with knockout mice
    • 10.1073/pnas.210184697, 17183, 11016969
    • Pak J, Huang F, Li J, Balschun D, Reymann K, Chiang C, Westphal H, Huang K. Involvement of neurogranin in the modulation of calcium/calmodulin-dependent protein kinase II, synaptic plasticity, and spatial learning: A study with knockout mice. Proc Natl Acad Sci USA 2000, 97:11232-11237. 10.1073/pnas.210184697, 17183, 11016969.
    • (2000) Proc Natl Acad Sci USA , vol.97 , pp. 11232-11237
    • Pak, J.1    Huang, F.2    Li, J.3    Balschun, D.4    Reymann, K.5    Chiang, C.6    Westphal, H.7    Huang, K.8
  • 31
    • 0035682775 scopus 로고    scopus 로고
    • Neurogranin null mutant mice display performance deficits on spatial learning tasks with anxiety related components
    • 10.1002/hipo.1092, 11811671
    • Miyakawa T, Yared E, Pak J, Huang F, Huang K, Crawley J. Neurogranin null mutant mice display performance deficits on spatial learning tasks with anxiety related components. Hippocampus 2001, 11:763-775. 10.1002/hipo.1092, 11811671.
    • (2001) Hippocampus , vol.11 , pp. 763-775
    • Miyakawa, T.1    Yared, E.2    Pak, J.3    Huang, F.4    Huang, K.5    Crawley, J.6
  • 32
    • 9344271526 scopus 로고    scopus 로고
    • Neurogranin/RC3 enhances long-term potentiation and learning by promoting calcium-mediated signaling
    • 10.1523/JNEUROSCI.2213-04.2004, 15564582
    • Huang K, Huang F, Jäger T, Li J, Reymann K, Balschun D. Neurogranin/RC3 enhances long-term potentiation and learning by promoting calcium-mediated signaling. J Neurosci 2004, 24:10660-10669. 10.1523/JNEUROSCI.2213-04.2004, 15564582.
    • (2004) J Neurosci , vol.24 , pp. 10660-10669
    • Huang, K.1    Huang, F.2    Jäger, T.3    Li, J.4    Reymann, K.5    Balschun, D.6
  • 33
    • 0025898829 scopus 로고
    • Localization of an endoplasmic reticulum calcium ATPase mRNA in rat brain by in situ hybridization
    • 10.1016/0306-4522(91)90410-P, 1833665
    • Miller K, Verma A, Snyder S, Ross C. Localization of an endoplasmic reticulum calcium ATPase mRNA in rat brain by in situ hybridization. Neuroscience 1991, 43:1-9. 10.1016/0306-4522(91)90410-P, 1833665.
    • (1991) Neuroscience , vol.43 , pp. 1-9
    • Miller, K.1    Verma, A.2    Snyder, S.3    Ross, C.4
  • 34
    • 34248227248 scopus 로고    scopus 로고
    • Cellular functions of NSF: not just SNAPs and SNAREs
    • 10.1016/j.febslet.2007.03.032, 1948069, 17397838
    • Zhao C, Slevin J, Whiteheart S. Cellular functions of NSF: not just SNAPs and SNAREs. FEBS Lett 2007, 581:2140-2149. 10.1016/j.febslet.2007.03.032, 1948069, 17397838.
    • (2007) FEBS Lett , vol.581 , pp. 2140-2149
    • Zhao, C.1    Slevin, J.2    Whiteheart, S.3
  • 35
    • 1642336131 scopus 로고    scopus 로고
    • A selective inhibitor of tissue-type plasminogen activator in the central nervous system
    • Yepes M, Lawrence D. a selective inhibitor of tissue-type plasminogen activator in the central nervous system. Thromb Haemost 2004, 91:457-464.
    • (2004) Thromb Haemost , vol.91 , pp. 457-464
    • Yepes, M.1    Lawrence, D.2
  • 36
    • 1542332334 scopus 로고
    • The Method of Multiple Working Hypotheses
    • [(a reprint is published in Science 148, 754-759)]., 10.1126/science.ns-15.366.92, 17782687
    • Chamberlin T. The Method of Multiple Working Hypotheses. Science 1890, 15:92. [(a reprint is published in Science 148, 754-759)]., 10.1126/science.ns-15.366.92, 17782687.
    • (1890) Science , vol.15 , pp. 92
    • Chamberlin, T.1
  • 37
    • 0024389828 scopus 로고
    • Fitting piecewise linear regression functions to biological responses
    • Vieth E. Fitting piecewise linear regression functions to biological responses. J Appl Physiol 1989, 67:390-396.
    • (1989) J Appl Physiol , vol.67 , pp. 390-396
    • Vieth, E.1
  • 38
    • 0024976311 scopus 로고
    • Fitting Bent Lines to Data, with Applications to Allometry
    • 10.1016/S0022-5193(89)80141-9, 2607772
    • Chappell R. Fitting Bent Lines to Data, with Applications to Allometry. J Theor Biol 1989, 138:235-256. 10.1016/S0022-5193(89)80141-9, 2607772.
    • (1989) J Theor Biol , vol.138 , pp. 235-256
    • Chappell, R.1
  • 39
    • 33746462775 scopus 로고    scopus 로고
    • The Clinical Applications of a Systems Approach
    • 10.1371/journal.pmed.0030209, 1459481,1459481, 16683861
    • Ahn AC, Tewari M, Poon CS, Phillips RS. The Clinical Applications of a Systems Approach. PLoS Med 2006, 3:e209. 10.1371/journal.pmed.0030209, 1459481,1459481, 16683861.
    • (2006) PLoS Med , vol.3
    • Ahn, A.C.1    Tewari, M.2    Poon, C.S.3    Phillips, R.S.4
  • 40
    • 62549110855 scopus 로고    scopus 로고
    • Personalizing medicine: a systems biology perspective
    • 10.1038/msb.2009.8, 2671924, 19293829
    • Deisboeck TS. Personalizing medicine: a systems biology perspective. Mol Syst Biol 2009, 5:249. 10.1038/msb.2009.8, 2671924, 19293829.
    • (2009) Mol Syst Biol , vol.5 , pp. 249
    • Deisboeck, T.S.1
  • 41
    • 25444533041 scopus 로고    scopus 로고
    • Quadratic regression analysis for gene discovery and pattern recognition for non-cyclic short time-course microarray experiments
    • 10.1186/1471-2105-6-106, 1127068, 15850479
    • Liu H, Tarima S, Borders AS, Getchell TV, Getchell ML, Stromberg AJ. Quadratic regression analysis for gene discovery and pattern recognition for non-cyclic short time-course microarray experiments. BMC Bioinformatics 2005, 6:106. 10.1186/1471-2105-6-106, 1127068, 15850479.
    • (2005) BMC Bioinformatics , vol.6 , pp. 106
    • Liu, H.1    Tarima, S.2    Borders, A.S.3    Getchell, T.V.4    Getchell, M.L.5    Stromberg, A.J.6
  • 42
    • 0036081355 scopus 로고    scopus 로고
    • NCBI gene expression and hybridization array data repository
    • 10.1093/nar/30.1.207
    • Edgar R, Domrachev M, Lash AE. NCBI gene expression and hybridization array data repository. Nucelic Acids Res 2002, 30:207-210. 10.1093/nar/30.1.207.
    • (2002) Nucelic Acids Res , vol.30 , pp. 207-210
    • Edgar, R.1    Domrachev, M.2    Lash, A.E.3
  • 43
    • 0042424602 scopus 로고    scopus 로고
    • Statistical significance for genomewide studies
    • 10.1073/pnas.1530509100, 170937, 12883005
    • Storey JD, Tibshirani R. Statistical significance for genomewide studies. Proc Natl Acad Sci USA 2003, 100:9440-9445. 10.1073/pnas.1530509100, 170937, 12883005.
    • (2003) Proc Natl Acad Sci USA , vol.100 , pp. 9440-9445
    • Storey, J.D.1    Tibshirani, R.2


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