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Volumn 10, Issue SUPPL. 3, 2009, Pages

BOAT: Basic Oligonucleotide Alignment Tool

Author keywords

[No Author keywords available]

Indexed keywords

ACCURACY; ARTICLE; BASIC OLIGONUCLEOTIDE ALIGNMENT TOOL; CLINICAL ASSESSMENT TOOL; CONTROLLED STUDY; FUNCTIONAL GENOMICS; GENE IDENTIFICATION; GENE MAPPING; GENE SEQUENCE; GENETIC ALGORITHM; GENETIC VARIABILITY; QUALITY CONTROL; SENSITIVITY ANALYSIS; SIMULATION; SINGLE NUCLEOTIDE POLYMORPHISM; STRUCTURAL GENOMICS; ALGORITHM; DNA SEQUENCE; EVALUATION; GENOMICS; HUMAN; METHODOLOGY; SENSITIVITY AND SPECIFICITY; SEQUENCE ALIGNMENT;

EID: 71549128677     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-10-S3-S2     Document Type: Article
Times cited : (6)

References (19)
  • 1
    • 53649106195 scopus 로고    scopus 로고
    • Next-generation DNA sequencing
    • 10.1038/nbt1486, 18846087
    • Shendure J, Ji H. Next-generation DNA sequencing. Nat Biotechnol 2008, 26(10):1135-1145. 10.1038/nbt1486, 18846087.
    • (2008) Nat Biotechnol , vol.26 , Issue.10 , pp. 1135-1145
    • Shendure, J.1    Ji, H.2
  • 2
    • 71549160128 scopus 로고    scopus 로고
    • Illumina® Simplifying Genetic Analysis
    • Solexa. Illumina® Simplifying Genetic Analysis. 2008, , http://www.illumina.com/downloads/ch1_ILMN_ProdGuide_SystemsSoftwares.pd f
    • (2008)
    • Solexa1
  • 3
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
    • 10.1093/nar/25.17.3389, 146917, 9254694
    • Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 1997, 25(17):3389-3402. 10.1093/nar/25.17.3389, 146917, 9254694.
    • (1997) Nucleic Acids Res , vol.25 , Issue.17 , pp. 3389-3402
    • Altschul, S.F.1    Madden, T.L.2    Schaffer, A.A.3    Zhang, J.4    Zhang, Z.5    Miller, W.6    Lipman, D.J.7
  • 4
    • 0036226603 scopus 로고    scopus 로고
    • BLAT--the BLAST-like alignment tool
    • 187518, 11932250
    • Kent WJ. BLAT--the BLAST-like alignment tool. Genome Res 2002, 12(4):656-664. 187518, 11932250.
    • (2002) Genome Res , vol.12 , Issue.4 , pp. 656-664
    • Kent, W.J.1
  • 6
    • 55549097836 scopus 로고    scopus 로고
    • Mapping short DNA sequencing reads and calling variants using mapping quality scores
    • 2577856, 18714091, 10.1101/gr.078212.108
    • Li H, Ruan J, Durbin R. Mapping short DNA sequencing reads and calling variants using mapping quality scores. Genome Res 2008, 18:1851-1858. 2577856, 18714091, 10.1101/gr.078212.108.
    • (2008) Genome Res , vol.18 , pp. 1851-1858
    • Li, H.1    Ruan, J.2    Durbin, R.3
  • 7
    • 41249096306 scopus 로고    scopus 로고
    • Using quality scores and longer reads improves accuracy of Solexa read mapping
    • 10.1186/1471-2105-9-128, 2335322, 18307793
    • Smith AD, Xuan Z, Zhang MQ. Using quality scores and longer reads improves accuracy of Solexa read mapping. BMC Bioinformatics 2008, 9:128. 10.1186/1471-2105-9-128, 2335322, 18307793.
    • (2008) BMC Bioinformatics , vol.9 , pp. 128
    • Smith, A.D.1    Xuan, Z.2    Zhang, M.Q.3
  • 8
    • 53749083993 scopus 로고    scopus 로고
    • SeqMap: mapping massive amount of oligonucleotides to the genome
    • 2562015, 18697769, 10.1093/bioinformatics/btn429
    • Jiang H, Wong WH. SeqMap: mapping massive amount of oligonucleotides to the genome. Bioinformatics 2008, 24:2395-2396. 2562015, 18697769, 10.1093/bioinformatics/btn429.
    • (2008) Bioinformatics , vol.24 , pp. 2395-2396
    • Jiang, H.1    Wong, W.H.2
  • 9
    • 52649157765 scopus 로고    scopus 로고
    • Substantial biases in ultra-short read data sets from high-throughput DNA sequencing
    • 10.1093/nar/gkn425, 2532726, 18660515
    • Dohm JC, Lottaz C, Borodina T, Himmelbauer H. Substantial biases in ultra-short read data sets from high-throughput DNA sequencing. Nucleic Acids Res 2008, 36(16):e105. 10.1093/nar/gkn425, 2532726, 18660515.
    • (2008) Nucleic Acids Res , vol.36 , Issue.16
    • Dohm, J.C.1    Lottaz, C.2    Borodina, T.3    Himmelbauer, H.4
  • 10
    • 79959524146 scopus 로고    scopus 로고
    • A haplotype map of the human genome
    • 10.1038/nature04226, 1880871, 16255080
    • Consortium H A haplotype map of the human genome. Nature 2005, 437(7063):1299-1320. 10.1038/nature04226, 1880871, 16255080.
    • (2005) Nature , vol.437 , Issue.7063 , pp. 1299-1320
  • 12
    • 34248385692 scopus 로고    scopus 로고
    • Extreme genomic variation in a natural population
    • 10.1073/pnas.0700890104, 1838466, 17372217
    • Small KS, Brudno M, Hill MM, Sidow A. Extreme genomic variation in a natural population. Proc Natl Acad Sci USA 2007, 104(13):5698-5703. 10.1073/pnas.0700890104, 1838466, 17372217.
    • (2007) Proc Natl Acad Sci USA , vol.104 , Issue.13 , pp. 5698-5703
    • Small, K.S.1    Brudno, M.2    Hill, M.M.3    Sidow, A.4
  • 13
    • 46249106990 scopus 로고    scopus 로고
    • Mapping and quantifying mammalian transcriptomes by RNA-Seq
    • 10.1038/nmeth.1226, 18516045
    • Mortazavi A, Williams BA, McCue K, Schaeffer L, Wold B. Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nat Methods 2008, 5(7):621-628. 10.1038/nmeth.1226, 18516045.
    • (2008) Nat Methods , vol.5 , Issue.7 , pp. 621-628
    • Mortazavi, A.1    Williams, B.A.2    McCue, K.3    Schaeffer, L.4    Wold, B.5
  • 14
    • 35948929094 scopus 로고    scopus 로고
    • SHARCGS, a fast and highly accurate short-read assembly algorithm for de novo genomic sequencing
    • 10.1101/gr.6435207, 2045152, 17908823
    • Dohm JC, Lottaz C, Borodina T, Himmelbauer H. SHARCGS, a fast and highly accurate short-read assembly algorithm for de novo genomic sequencing. Genome Res 2007, 17(11):1697-1706. 10.1101/gr.6435207, 2045152, 17908823.
    • (2007) Genome Res , vol.17 , Issue.11 , pp. 1697-1706
    • Dohm, J.C.1    Lottaz, C.2    Borodina, T.3    Himmelbauer, H.4
  • 15
    • 43149085041 scopus 로고    scopus 로고
    • De novo bacterial genome sequencing: millions of very short reads assembled on a desktop computer
    • 10.1101/gr.072033.107, 2336802, 18332092
    • Hernandez D, Francois P, Farinelli L, Osteras M, Schrenzel J. De novo bacterial genome sequencing: millions of very short reads assembled on a desktop computer. Genome Res 2008, 18(5):802-809. 10.1101/gr.072033.107, 2336802, 18332092.
    • (2008) Genome Res , vol.18 , Issue.5 , pp. 802-809
    • Hernandez, D.1    Francois, P.2    Farinelli, L.3    Osteras, M.4    Schrenzel, J.5
  • 16
    • 0034764307 scopus 로고    scopus 로고
    • SSAHA: a fast search method for large DNA databases
    • 10.1101/gr.194201, 311141, 11591649
    • Ning Z, Cox AJ, Mullikin JC. SSAHA: a fast search method for large DNA databases. Genome Res 2001, 11(10):1725-1729. 10.1101/gr.194201, 311141, 11591649.
    • (2001) Genome Res , vol.11 , Issue.10 , pp. 1725-1729
    • Ning, Z.1    Cox, A.J.2    Mullikin, J.C.3
  • 17
    • 33847307402 scopus 로고    scopus 로고
    • Assembling millions of short DNA sequences using SSAKE
    • 10.1093/bioinformatics/btl629, 17158514
    • Warren RL, Sutton GG, Jones SJ, Holt RA. Assembling millions of short DNA sequences using SSAKE. Bioinformatics 2007, 23(4):500-501. 10.1093/bioinformatics/btl629, 17158514.
    • (2007) Bioinformatics , vol.23 , Issue.4 , pp. 500-501
    • Warren, R.L.1    Sutton, G.G.2    Jones, S.J.3    Holt, R.A.4
  • 18
    • 0025259313 scopus 로고
    • Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes
    • 10.1073/pnas.87.6.2264, 53667, 2315319
    • Karlin S, Altschul SF. Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes. Proc Natl Acad Sci USA 1990, 87(6):2264-2268. 10.1073/pnas.87.6.2264, 53667, 2315319.
    • (1990) Proc Natl Acad Sci USA , vol.87 , Issue.6 , pp. 2264-2268
    • Karlin, S.1    Altschul, S.F.2


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